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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0328200 |
| Transcript ID | LotjaGi4g1v0328200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Threonine synthase; TAIR: AT4G29840.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|Q9S7B5|THRC1_ARATH Threonine synthase 1, chloroplastic; TrEMBL-Plants: tr|L0EIQ2|L0EIQ2_CICAR Threonine synthase; Found in the gene: LotjaGi4g1v0328200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70651815..70654036) extracted from Lotus japonicus Gifu genome v1.2.
CTTATGTTTATCTTCCAATCTCTGTATAATCTCTCTATAAGTATAACTCTAATTGGAGTCTGAAAAGATATGTTTGTTTC CATAAGCATCAGAATCTTAATTTCAACGTTTGGGGATAATTAAACCGCACGTGTTTCCACCCTAGTTTTGTGGGTTACCA CCATTACCATTGATGAAACTCTTTTGAGATATCAAGAAAACAAAATAAATAACGTGAACCACACAACTCCTCTTCTCAAA TTCTCAGAGGATTAAAAACAAGATAACGCAAAAAAAAAAAAAAATGCTCTCTTCGTTGTTCAATCCCTCTTTCGTTATTC CAAATGCAACACCAATCCATTCAACCGCCACTAGAAACACCCGCTTCCCCTCCACCGTCGTAATTCGCGCCGCCTCCAGC AACAGCCACCATCAACCGCCGGAGAGTATCAAGGAGGAAGAAGCGCGCCGCCACCGCTCCGCTGATAAGGACAACTTCAC CGCCAAGTACGTCCCCTTCAATGCCGGCTTCGACTCCCCGGAGTCATACTCTCTCGATGAGATCGTCTACCGGAGCAACT CCGGCGGGTTGCTTGATGTCCAGCATGATATGGAGGCGTTGGGAAGGTTCGACGGTGCGTACTGGCGGAACCTCTTCGAC TCGCGCGTGGGGAAGACGACGTGGCCGTATGGTTCTGGTGTCTGGAGCAAGAAGGAGTGGGTCCTCCCGGAGATTCACCC CGACGACATCGTCTCCGCCTTCGAGGGAAACTCCAACCTCTTCTGGGCGGAGCGATACGGGAAACAGTATCTCGGCATGA ACGACCTCTGGGTGAAACACTGCGGCATCAGCCACACCGGAAGCTTCAAGGATCTCGGCATGACGGTTCTCGTCAGCCAA GTAAACCGCCTCCGTAGAATGAACCGTCCCCTCGTCGGCGTCGGGTGCGCCTCCACCGGCGACACATCCGCCGCGCTCTC CGCCTACTGCGCCGCCGCGGGAATCCCATCCATTGTCTTCCTCCCGGACAACAAGATCTCCACCGCGCAGCTGATTCAAC CTGTTTCCAACGGCGCTCTGGTTCTCAGCATCGCCACCGACTTCGACGGCTGCATGAAATTAATCCGGGAAATCACCGCC GAGCTTCCAATCTACCTCGCGAACTCGCTCAACAGCTTGAGAATCGAGGGGCAGAAAACCGCCGCCATTGAGATTCTTCA GCAGTTCAACTGGGAGGTTCCTGATTGGGTGATCGTTCCCGGCGGGAACCTCGGCAACATCTACGCCTTCTACAAGGGGT TCAAGATGTGCAAGGATCTCGGCCTCGTGGAGAAGATTCCTCGACTGGTTTGTGCTCAGGCGGCGAATGCGAATCCTCTG TATCGATACTACAAATCTGGGTGGAAGGAGTTCAAGGCGATTAAGGCGGAAACCACATTCGCTTCGGCGATTCAGATTGG TGACCCGGTTTCGATTGACAGGGCGGTGCATGCGCTGAAGAGTTGTGGTGGGATTGTGGAGGAGGCGACGGAGGAGGAGC TGATGGATGCGATGGCGTTGGCGGATTCGACTGGGATGTTTATTTGCCCGCATACTGGGGTGGCTTTGACGGCACTGACG AAGCTGAGAAACTCCGGGGTGATTGCGGCGGGTGATAGGGCGGTGGTGGTGAGCACCGCGCATGGGTTGAAGTTTACACA GAGCAAGATTGATTATCACTCTAAGGCTATTCCGGGTTTGGGTCGGTTTTCTAACCCACCTGTTACTGTGAAAGCGGATT TTGGAGCGGTTATGGATGTGCTTAAGGATTTTTTGAGCAAGGCGCCAAAAGTATGAGTGAAGCTAGTTTAGCATTTGTCT TCTTGTGCTTTGATTTTTAAATTTTAATTTCACAGTTTTGTTTATGTTTGACTAATAAACACCAACTGAGAGTCTTGCTT GAATAAACCGGTGGTTACTTGGACAAGAGATTCTAAATGCTTTAAAATGTAGCAGCAGATATACCGCCAAATGTGGAGAT GAATTTGCATTAGATTATTCTAGTTTAAACAGATGTCTCGGACTTGAATGTTTTTATTTTGTGTGCCGCCTAGAGTGATC CAACAATGGAGAAAACATGTGTTTTTTGGAACATCATCATATGCTTCAGTTTGACCTAGGGAAAAGCTTTCGTAGGATAC ACGGTGGAAAATTGATGATGCCATGCCTGTATAAAATATTGGCATGCTGGCCGATGCGAAAT
CDS sequence (LotjaGi4g1v0328200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCTTCGTTGTTCAATCCCTCTTTCGTTATTCCAAATGCAACACCAATCCATTCAACCGCCACTAGAAACACCCG CTTCCCCTCCACCGTCGTAATTCGCGCCGCCTCCAGCAACAGCCACCATCAACCGCCGGAGAGTATCAAGGAGGAAGAAG CGCGCCGCCACCGCTCCGCTGATAAGGACAACTTCACCGCCAAGTACGTCCCCTTCAATGCCGGCTTCGACTCCCCGGAG TCATACTCTCTCGATGAGATCGTCTACCGGAGCAACTCCGGCGGGTTGCTTGATGTCCAGCATGATATGGAGGCGTTGGG AAGGTTCGACGGTGCGTACTGGCGGAACCTCTTCGACTCGCGCGTGGGGAAGACGACGTGGCCGTATGGTTCTGGTGTCT GGAGCAAGAAGGAGTGGGTCCTCCCGGAGATTCACCCCGACGACATCGTCTCCGCCTTCGAGGGAAACTCCAACCTCTTC TGGGCGGAGCGATACGGGAAACAGTATCTCGGCATGAACGACCTCTGGGTGAAACACTGCGGCATCAGCCACACCGGAAG CTTCAAGGATCTCGGCATGACGGTTCTCGTCAGCCAAGTAAACCGCCTCCGTAGAATGAACCGTCCCCTCGTCGGCGTCG GGTGCGCCTCCACCGGCGACACATCCGCCGCGCTCTCCGCCTACTGCGCCGCCGCGGGAATCCCATCCATTGTCTTCCTC CCGGACAACAAGATCTCCACCGCGCAGCTGATTCAACCTGTTTCCAACGGCGCTCTGGTTCTCAGCATCGCCACCGACTT CGACGGCTGCATGAAATTAATCCGGGAAATCACCGCCGAGCTTCCAATCTACCTCGCGAACTCGCTCAACAGCTTGAGAA TCGAGGGGCAGAAAACCGCCGCCATTGAGATTCTTCAGCAGTTCAACTGGGAGGTTCCTGATTGGGTGATCGTTCCCGGC GGGAACCTCGGCAACATCTACGCCTTCTACAAGGGGTTCAAGATGTGCAAGGATCTCGGCCTCGTGGAGAAGATTCCTCG ACTGGTTTGTGCTCAGGCGGCGAATGCGAATCCTCTGTATCGATACTACAAATCTGGGTGGAAGGAGTTCAAGGCGATTA AGGCGGAAACCACATTCGCTTCGGCGATTCAGATTGGTGACCCGGTTTCGATTGACAGGGCGGTGCATGCGCTGAAGAGT TGTGGTGGGATTGTGGAGGAGGCGACGGAGGAGGAGCTGATGGATGCGATGGCGTTGGCGGATTCGACTGGGATGTTTAT TTGCCCGCATACTGGGGTGGCTTTGACGGCACTGACGAAGCTGAGAAACTCCGGGGTGATTGCGGCGGGTGATAGGGCGG TGGTGGTGAGCACCGCGCATGGGTTGAAGTTTACACAGAGCAAGATTGATTATCACTCTAAGGCTATTCCGGGTTTGGGT CGGTTTTCTAACCCACCTGTTACTGTGAAAGCGGATTTTGGAGCGGTTATGGATGTGCTTAAGGATTTTTTGAGCAAGGC GCCAAAAGTATGA
Protein sequence (LotjaGi4g1v0328200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSLFNPSFVIPNATPIHSTATRNTRFPSTVVIRAASSNSHHQPPESIKEEEARRHRSADKDNFTAKYVPFNAGFDSPE SYSLDEIVYRSNSGGLLDVQHDMEALGRFDGAYWRNLFDSRVGKTTWPYGSGVWSKKEWVLPEIHPDDIVSAFEGNSNLF WAERYGKQYLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRMNRPLVGVGCASTGDTSAALSAYCAAAGIPSIVFL PDNKISTAQLIQPVSNGALVLSIATDFDGCMKLIREITAELPIYLANSLNSLRIEGQKTAAIEILQQFNWEVPDWVIVPG GNLGNIYAFYKGFKMCKDLGLVEKIPRLVCAQAANANPLYRYYKSGWKEFKAIKAETTFASAIQIGDPVSIDRAVHALKS CGGIVEEATEEELMDAMALADSTGMFICPHTGVALTALTKLRNSGVIAAGDRAVVVSTAHGLKFTQSKIDYHSKAIPGLG RFSNPPVTVKADFGAVMDVLKDFLSKAPKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 506 | 479 | 1.7E-252 | – | |
| PANTHER | 28 | 506 | 479 | 1.7E-252 | – | |
| MobiDBLite | 37 | 60 | 24 | - | – | |
| MobiDBLite | 45 | 60 | 16 | - | – | |
| SUPERFAMILY | 82 | 504 | 423 | 5.37E-108 | ||
| Gene3D | 93 | 477 | 385 | 4.9E-183 | ||
| CDD | 134 | 464 | 331 | 1.28068E-145 | – | |
| TIGRFAM | 140 | 462 | 323 | 5.6E-62 | ||
| Pfam | 152 | 458 | 307 | 1.9E-51 | ||
| ProSitePatterns | 179 | 193 | 15 | - | ||
| Gene3D | 188 | 289 | 102 | 4.9E-183 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0328200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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