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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0328200 |
Transcript ID | LotjaGi4g1v0328200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Threonine synthase; TAIR: AT4G29840.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|Q9S7B5|THRC1_ARATH Threonine synthase 1, chloroplastic; TrEMBL-Plants: tr|L0EIQ2|L0EIQ2_CICAR Threonine synthase; Found in the gene: LotjaGi4g1v0328200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70652028..70653779) extracted from Lotus japonicus Gifu genome v1.2.
GTGAACCACACAACTCCTCTTCTCAAATTCTCAGAGGATTAAAAACAAGATAACGCAAAAAAAAAAAAAAATGCTCTCTT CGTTGTTCAATCCCTCTTTCGTTATTCCAAATGCAACACCAATCCATTCAACCGCCACTAGAAACACCCGCTTCCCCTCC ACCGTCGTAATTCGCGCCGCCTCCAGCAACAGCCACCATCAACCGCCGGAGAGTATCAAGGAGGAAGAAGCGCGCCGCCA CCGCTCCGCTGATAAGGACAACTTCACCGCCAAGTACGTCCCCTTCAATGCCGGCTTCGACTCCCCGGAGTCATACTCTC TCGATGAGATCGTCTACCGGAGCAACTCCGGCGGGTTGCTTGATGTCCAGCATGATATGGAGGCGTTGGGAAGGTTCGAC GGTGCGTACTGGCGGAACCTCTTCGACTCGCGCGTGGGGAAGACGACGTGGCCGTATGGTTCTGGTGTCTGGAGCAAGAA GGAGTGGGTCCTCCCGGAGATTCACCCCGACGACATCGTCTCCGCCTTCGAGGGAAACTCCAACCTCTTCTGGGCGGAGC GATACGGGAAACAGTATCTCGGCATGAACGACCTCTGGGTGAAACACTGCGGCATCAGCCACACCGGAAGCTTCAAGGAT CTCGGCATGACGGTTCTCGTCAGCCAAGTAAACCGCCTCCGTAGAATGAACCGTCCCCTCGTCGGCGTCGGGTGCGCCTC CACCGGCGACACATCCGCCGCGCTCTCCGCCTACTGCGCCGCCGCGGGAATCCCATCCATTGTCTTCCTCCCGGACAACA AGATCTCCACCGCGCAGCTGATTCAACCTGTTTCCAACGGCGCTCTGGTTCTCAGCATCGCCACCGACTTCGACGGCTGC ATGAAATTAATCCGGGAAATCACCGCCGAGCTTCCAATCTACCTCGCGAACTCGCTCAACAGCTTGAGAATCGAGGGGCA GAAAACCGCCGCCATTGAGATTCTTCAGCAGTTCAACTGGGAGGTTCCTGATTGGGTGATCGTTCCCGGCGGGAACCTCG GCAACATCTACGCCTTCTACAAGGGGTTCAAGATGTGCAAGGATCTCGGCCTCGTGGAGAAGATTCCTCGACTGGTTTGT GCTCAGGCGGCGAATGCGAATCCTCTGTATCGATACTACAAATCTGGGTGGAAGGAGTTCAAGGCGATTAAGGCGGAAAC CACATTCGCTTCGGCGATTCAGATTGGTGACCCGGTTTCGATTGACAGGGCGGTGCATGCGCTGAAGAGTTGTGGTGGGA TTGTGGAGGAGGCGACGGAGGAGGAGCTGATGGATGCGATGGCGTTGGCGGATTCGACTGGGATGTTTATTTGCCCGCAT ACTGGGGTGGCTTTGACGGCACTGACGAAGCTGAGAAACTCCGGGGTGATTGCGGCGGGTGATAGGGCGGTGGTGGTGAG CACCGCGCATGGGTTGAAGTTTACACAGAGCAAGATTGATTATCACTCTAAGGCTATTCCGGGTTTGGGTCGGTTTTCTA ACCCACCTGTTACTGTGAAAGCGGATTTTGGAGCGGTTATGGATGTGCTTAAGGATTTTTTGAGCAAGGCGCCAAAAGTA TGAGTGAAGCTAGTTTAGCATTTGTCTTCTTGTGCTTTGATTTTTAAATTTTAATTTCACAGTTTTGTTTATGTTTGACT AATAAACACCAACTGAGAGTCTTGCTTGAATAAACCGGTGGTTACTTGGACAAGAGATTCTAAATGCTTTAA
CDS sequence (LotjaGi4g1v0328200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCTTCGTTGTTCAATCCCTCTTTCGTTATTCCAAATGCAACACCAATCCATTCAACCGCCACTAGAAACACCCG CTTCCCCTCCACCGTCGTAATTCGCGCCGCCTCCAGCAACAGCCACCATCAACCGCCGGAGAGTATCAAGGAGGAAGAAG CGCGCCGCCACCGCTCCGCTGATAAGGACAACTTCACCGCCAAGTACGTCCCCTTCAATGCCGGCTTCGACTCCCCGGAG TCATACTCTCTCGATGAGATCGTCTACCGGAGCAACTCCGGCGGGTTGCTTGATGTCCAGCATGATATGGAGGCGTTGGG AAGGTTCGACGGTGCGTACTGGCGGAACCTCTTCGACTCGCGCGTGGGGAAGACGACGTGGCCGTATGGTTCTGGTGTCT GGAGCAAGAAGGAGTGGGTCCTCCCGGAGATTCACCCCGACGACATCGTCTCCGCCTTCGAGGGAAACTCCAACCTCTTC TGGGCGGAGCGATACGGGAAACAGTATCTCGGCATGAACGACCTCTGGGTGAAACACTGCGGCATCAGCCACACCGGAAG CTTCAAGGATCTCGGCATGACGGTTCTCGTCAGCCAAGTAAACCGCCTCCGTAGAATGAACCGTCCCCTCGTCGGCGTCG GGTGCGCCTCCACCGGCGACACATCCGCCGCGCTCTCCGCCTACTGCGCCGCCGCGGGAATCCCATCCATTGTCTTCCTC CCGGACAACAAGATCTCCACCGCGCAGCTGATTCAACCTGTTTCCAACGGCGCTCTGGTTCTCAGCATCGCCACCGACTT CGACGGCTGCATGAAATTAATCCGGGAAATCACCGCCGAGCTTCCAATCTACCTCGCGAACTCGCTCAACAGCTTGAGAA TCGAGGGGCAGAAAACCGCCGCCATTGAGATTCTTCAGCAGTTCAACTGGGAGGTTCCTGATTGGGTGATCGTTCCCGGC GGGAACCTCGGCAACATCTACGCCTTCTACAAGGGGTTCAAGATGTGCAAGGATCTCGGCCTCGTGGAGAAGATTCCTCG ACTGGTTTGTGCTCAGGCGGCGAATGCGAATCCTCTGTATCGATACTACAAATCTGGGTGGAAGGAGTTCAAGGCGATTA AGGCGGAAACCACATTCGCTTCGGCGATTCAGATTGGTGACCCGGTTTCGATTGACAGGGCGGTGCATGCGCTGAAGAGT TGTGGTGGGATTGTGGAGGAGGCGACGGAGGAGGAGCTGATGGATGCGATGGCGTTGGCGGATTCGACTGGGATGTTTAT TTGCCCGCATACTGGGGTGGCTTTGACGGCACTGACGAAGCTGAGAAACTCCGGGGTGATTGCGGCGGGTGATAGGGCGG TGGTGGTGAGCACCGCGCATGGGTTGAAGTTTACACAGAGCAAGATTGATTATCACTCTAAGGCTATTCCGGGTTTGGGT CGGTTTTCTAACCCACCTGTTACTGTGAAAGCGGATTTTGGAGCGGTTATGGATGTGCTTAAGGATTTTTTGAGCAAGGC GCCAAAAAGATTCTAA
Protein sequence (LotjaGi4g1v0328200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSLFNPSFVIPNATPIHSTATRNTRFPSTVVIRAASSNSHHQPPESIKEEEARRHRSADKDNFTAKYVPFNAGFDSPE SYSLDEIVYRSNSGGLLDVQHDMEALGRFDGAYWRNLFDSRVGKTTWPYGSGVWSKKEWVLPEIHPDDIVSAFEGNSNLF WAERYGKQYLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRMNRPLVGVGCASTGDTSAALSAYCAAAGIPSIVFL PDNKISTAQLIQPVSNGALVLSIATDFDGCMKLIREITAELPIYLANSLNSLRIEGQKTAAIEILQQFNWEVPDWVIVPG GNLGNIYAFYKGFKMCKDLGLVEKIPRLVCAQAANANPLYRYYKSGWKEFKAIKAETTFASAIQIGDPVSIDRAVHALKS CGGIVEEATEEELMDAMALADSTGMFICPHTGVALTALTKLRNSGVIAAGDRAVVVSTAHGLKFTQSKIDYHSKAIPGLG RFSNPPVTVKADFGAVMDVLKDFLSKAPKRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 28 | 506 | 479 | 1.6E-252 | – | |
PANTHER | 28 | 506 | 479 | 1.6E-252 | – | |
MobiDBLite | 37 | 60 | 24 | - | – | |
MobiDBLite | 45 | 60 | 16 | - | – | |
SUPERFAMILY | 82 | 504 | 423 | 5.37E-108 | ||
Gene3D | 93 | 477 | 385 | 5.0E-183 | ||
CDD | 134 | 464 | 331 | 8.29595E-146 | – | |
TIGRFAM | 140 | 462 | 323 | 5.6E-62 | ||
Pfam | 152 | 458 | 307 | 1.9E-51 | ||
ProSitePatterns | 179 | 193 | 15 | - | ||
Gene3D | 188 | 289 | 102 | 5.0E-183 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0328200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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