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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0329200 |
| Transcript ID | LotjaGi4g1v0329200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin; TAIR: AT1G67590.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A0S3R1H4|A0A0S3R1H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0329200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70793043..70796851) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAAATAGAGGTGTCTCAAGACGTATGTACTATTTGGAAGTACACCTATCATTTATGTAATTTTAATCATGATTATTG TACTTAGACATTTAAATAGTGCAGACATCTTTCATATACTCATTTTTCTCTGACTCTTTTATTATCATATTGTTATATAT TACATAAATTACTTATTTCTCTTCTCTTTCATTGTTATTCTAGATGCTTATTAGATGTTTGCACCATAGAAATAAATCTG GAAGGAACATTTTCCTTTTAACCCCCAACATTTCTCTTGAGAACAGTACAATATTAGTTTTTGCTATCTAGTGGACATGT CACTGACACATAAACCAAGAAACACCCTCCATGATTCCTCTGCCAAATTGAGAGTGAAGATGAACTCTGGATTCCAACCG ACATGGCACCTGCATGGCTCAGTAATAATAAAACTCCAACAATTCCCAATGTAAAATAGTTATTCTATCTGTGTTTCTTC TTTTCTTTCTGAGCTTCTTTTTTATCAACTGTTGTTGTAAGTTGATCCCTTTTCTTCTGAACCAAGAATAGTATTTTGTT AGTATTATAATGTTCAACGGATCTGAAATTCACCTCTCTGCTCTGCAACTCTCAGAATTTCATGGTTTGAAGTATTAAGG TATTATTCTCTTAAATTAGCATATAACTCAGTTTTGAAAACTTAAGTTACTCAATGTGCTTTATTGGGTCTAATAATGAC CAAATTATTGACAACTTGAGATTCAAAAATGGAACTTAATGTGTGTAATGTAATGTACATTAAGCTTTATTTAGCTCTTT GTTTAGCTTGCTTCATTAAGAGTTGAGACTAGTTTATTTTTCTGAGTTTAAGGGGTTTTCCTTGTTCTACCTTGGTTCTG TTTATTGTTCCTCCTTAGTCCTTAGATATATATACCTTCTGTTTTTCATTTTTGTAAAAACACACTAAATATACTTGCAA GGATCTCAAGCTGAGTAATAGCTCATATTTTCCCCCCCAGATTTGTTTTTCTTACAGATATATGTTAACAATTATTTCAA GATAAAACTGATTTTCAATATATAGGATCTGGAACAAAAGTTGTAGACTCTCAAATTTTCACTTTGCTGAGTTTGGACAG GTTTTGTTCTTTCTCTCCTCCCTCAGCTTTAGCTTTGAAACGCATGAAACAGACTTGACATACGAGTGTGATAGTCTGTG CGCCGGTTACTGCTCAGGATTTTGGGTCGAGAGACATCTTTATTATGAAATACGTGGAAGACAAGGAGATCTCAAATAGC AGTGCCGTCATGCATCATTCAGAGTTTCAGAATGGAAAAAATGCTGCTCGAGTTTCGAATCATCGTCATCGAATAACTAA TGGAAAACCAACCCCATCTAAGTGGGACGATGCACAAAAATGGCTTGTGGGGTTGTCAAAAGGAGGAGGGGGAGGAGAGA AAAGCCAGTCCAAAAGCAGCAAGCCAAGAAACTCAAATGCTGATGATTTGAGATTGATAGCTCCTGTACCACAGAAGGAG CAAGATTACTCAAGCAGTGAGAAGGAAGAAGAGGATCAAGAACATGATGTGTGCCATGATTTCATAACAACTACTACTAG TGATGATGCAGAAACCAATAAATATGTTTCAGAACACACTTTGGTCCCAGTTCAATCACTTTGTTTCAGAGATATGGGGA CTGAGATGACACCAATTGCAAGCCAAGAGCCTTCAAGAACTGCTACCCCCATTAGAGCAACAACTCCTGCAACTAGAAGC CCAATTCATTCAGGGACTTCAACTCCAATGAAGGGTCAAAATGGGTTGGATAATAAAGGTGCTGCTGAGGGTGGAAGTGT TTCAAGCAGAGGCAACAATGGCACAATTACTAGGCAGTGTTGTGGTGGAGAAGGGTCTGAGAAGAAGATTGAAGATCAAG CTAAAAAGTTAAGTCCTCTTGAAAGCAGAGCAATTGCTTGGGATGAGGCAGAACGTGCCAAATTTATGGCCAGGTAAATT AACATGATAATTTGCATAACTTCCCTTAGCATTTGGACTGTCCATAGTAATTTTAGTTTCATTGTGATTTTCTACATGCA TCCAAACATGCACAATCTGATATTCGAAAGCTATTGACTGAAGCTTCTCCTCAAAATTGATTTTGATTTTAGAAGGAATT TTAGATGAATTTCCAAATACTATTGTTAGTTTATTTTATTTTTAAGCAAACACTTAATGTAAGTAGTACTCATATGTGTT TAATAAATGGTTCCTGGCAGGGTATGTTGCATAGATCTGAATTGTTGACAAAGCTAGTTTGTTAAAAAAAACTTGATTGT AGGTTCAAGCGTGAAGAGGTGAAGATTCAAGCCTGGGAAAATCATCAGATAAGAAAAGCTGAGATGGAAATGAAGAAAAT GGAGGTACCTTCTTGACTGAGTGTAGTTGTTCTTACATTGATTATGCAGTTGTATGTCCTATCACTTCTATAAAAGAACT ATGAAGTATAATCTTTTATTATGCAGCTGTATGTCCTATAATTTTTGCTTTTGCAGAAAGAATAGAAAGAATGTTAATCA CGCAGTGATATTGTGGTGCTTTGTGTTCGGTGCTTACCTTCAATCTAAACATACTAAAAAAACATGGTTAAGCAAATCTC TCCATAACTGTAAAATAGGGGTGTATTTTGGCTTTGCAGTACAATCAATGGTTTCCCTCGAACTGTTGTCCATGATTTTA ACCTTTTCCAAAACTGTAGATGATGGCTCGACTTTTCATGCACTCCATTCCTGTGAACAATGCTGTGGCAAAGTTCATAA GTATAGTGTTGAAAGTTCTATAGGACACACTGACAAAGAGAATTATTCTCGGAAAGGGACAATGCATGACAGGGTCATGA GTTACAATCTCTCTTGGGAAGAAGTTACAACTTACAACTGAAAGAGCATATTTGGATACACTGTAAAAAAATCAATCAGT GAGCTAAAATTATGGGATACAAAAACGATTTTTCTTAACTTTTGAGGTTGTCCTCTGTAATTTTGGTATCACCTTGATTT TGAAACGTATATCCAAATATGCACAAGCTTCTAAATAAATGTGCTTCAAGTGTTGTGCACATTGTAAAATCAAGCATTCA CTTAGTAGCTTTTGGGCATGTTTAGAAACACAGTGTAAAATCATAGTAAAATTAAAATCACGGTGAATAGAAACAAATTT CTTTAACTTTTGTGATTATGTACCGTTACTGTGATTTTTCATAGTGTATTCAAATATGCACTTTGTTGTGTAAGAAATGA TTCTGGAATACCTAGATGTGAATCCAAATATGTTGATTATTGTGAATTGGGATTATCTGACCAAAACAAAAAAGTTGCAC ATGTGTATTGTGTGCCTCCAAATAATTTGTGAGCAAAGTTTTTCAAATTTGCTTTACACCACTGCTAAATTTTAGTATTC AGTACATTAATTTGGCCGTTTAAGAAATGGATTGAATTTAATTACTAGGTGAAAGCTGAGAGGATGAAAGCTTTGGCACA AGAAAGGTTCACAAATAAACTGGCTACAACTAAGAGAATAGCTGAAGAGAAGAGAGCTAATGCACAAGTGGAGCTGAAGG ACCAAGCTTTGAAGACTACTGAAAGGGTAGAGTATATAAGAAGGACAGGGCATGTGCCTTCTTCATTCTCTTTCAACTTC AAGTTGCCTTCCATCTGCTGGTAGCAAGTACCAACTTATATGTAATATCATTATCTTGTATGAAATGTAAAACCTTGGGA ATCTAATATTTATGCTACTTCTAAAATAATTGAATTACATTATGCTTTC
CDS sequence (LotjaGi4g1v0329200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATACGTGGAAGACAAGGAGATCTCAAATAGCAGTGCCGTCATGCATCATTCAGAGTTTCAGAATGGAAAAAATGC TGCTCGAGTTTCGAATCATCGTCATCGAATAACTAATGGAAAACCAACCCCATCTAAGTGGGACGATGCACAAAAATGGC TTGTGGGGTTGTCAAAAGGAGGAGGGGGAGGAGAGAAAAGCCAGTCCAAAAGCAGCAAGCCAAGAAACTCAAATGCTGAT GATTTGAGATTGATAGCTCCTGTACCACAGAAGGAGCAAGATTACTCAAGCAGTGAGAAGGAAGAAGAGGATCAAGAACA TGATGTGTGCCATGATTTCATAACAACTACTACTAGTGATGATGCAGAAACCAATAAATATGTTTCAGAACACACTTTGG TCCCAGTTCAATCACTTTGTTTCAGAGATATGGGGACTGAGATGACACCAATTGCAAGCCAAGAGCCTTCAAGAACTGCT ACCCCCATTAGAGCAACAACTCCTGCAACTAGAAGCCCAATTCATTCAGGGACTTCAACTCCAATGAAGGGTCAAAATGG GTTGGATAATAAAGGTGCTGCTGAGGGTGGAAGTGTTTCAAGCAGAGGCAACAATGGCACAATTACTAGGCAGTGTTGTG GTGGAGAAGGGTCTGAGAAGAAGATTGAAGATCAAGCTAAAAAGTTAAGTCCTCTTGAAAGCAGAGCAATTGCTTGGGAT GAGGCAGAACGTGCCAAATTTATGGCCAGGTTCAAGCGTGAAGAGGTGAAGATTCAAGCCTGGGAAAATCATCAGATAAG AAAAGCTGAGATGGAAATGAAGAAAATGGAGGTGAAAGCTGAGAGGATGAAAGCTTTGGCACAAGAAAGGTTCACAAATA AACTGGCTACAACTAAGAGAATAGCTGAAGAGAAGAGAGCTAATGCACAAGTGGAGCTGAAGGACCAAGCTTTGAAGACT ACTGAAAGGGTAGAGTATATAAGAAGGACAGGGCATGTGCCTTCTTCATTCTCTTTCAACTTCAAGTTGCCTTCCATCTG CTGGTAG
Protein sequence (LotjaGi4g1v0329200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYVEDKEISNSSAVMHHSEFQNGKNAARVSNHRHRITNGKPTPSKWDDAQKWLVGLSKGGGGGEKSQSKSSKPRNSNAD DLRLIAPVPQKEQDYSSSEKEEEDQEHDVCHDFITTTTSDDAETNKYVSEHTLVPVQSLCFRDMGTEMTPIASQEPSRTA TPIRATTPATRSPIHSGTSTPMKGQNGLDNKGAAEGGSVSSRGNNGTITRQCCGGEGSEKKIEDQAKKLSPLESRAIAWD EAERAKFMARFKREEVKIQAWENHQIRKAEMEMKKMEVKAERMKALAQERFTNKLATTKRIAEEKRANAQVELKDQALKT TERVEYIRRTGHVPSSFSFNFKLPSICW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 108 | 108 | - | – | |
| PANTHER | 11 | 347 | 337 | 1.7E-110 | – | |
| PANTHER | 11 | 347 | 337 | 1.7E-110 | – | |
| MobiDBLite | 14 | 28 | 15 | - | – | |
| MobiDBLite | 94 | 108 | 15 | - | – | |
| MobiDBLite | 152 | 186 | 35 | - | – | |
| MobiDBLite | 152 | 215 | 64 | - | – | |
| MobiDBLite | 197 | 212 | 16 | - | – | |
| Pfam | 233 | 335 | 103 | 4.7E-30 | ||
| Coils | 266 | 286 | 21 | - | – | |
| Coils | 299 | 319 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0329200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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