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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0332500 |
| Transcript ID | LotjaGi4g1v0332500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor, putative; TAIR: AT2G47260.1 WRKY DNA-binding protein 23; Swiss-Prot: sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23; TrEMBL-Plants: tr|I1KMP6|I1KMP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0332500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71165733..71168047) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTATTTTAAGCAGGGGACAATTCACATTATAAAAGAAATGGAGGAGAAGAGAGAGAAAGCAGAGAAGTCATTCAGCT GCAGCACCATGTCAAATTCTGTGGCATTTTCCGACACTGGGAATCCCAGCTTCGGCTCCATTTTCTCATTCCTCATGGAA AAGATGCCACCACCACCACCCTCACCACCACTACCACCCCTATCACCGCTACCGCTGCCACCATTTCACCAACAAACTTC CTCTTTTGGAAGCTTCAAGGACTTGTTAACAATCGAGGATTTTGATCCTGCTTTGTTTGATTGGAACCCCACCACCACCA CCAACACCGCCGCCGCTGCTGACGTCACTTCACCACCACTTTCTACCACCCAAATCAGCCACCCTGTTCCCTCCCCTGCC ACCTCCAACATCCTTCCTGAGTACTCTTCTGATGTGCTCAACACTCCAACCACCCCCAACTCCTCCTCAATCTCATCATC GACGAATGGAACAGGGAATGATCGTGCAGAACCAGAACCAGAAGCTGAGAATGATGATGATGGAGATGCCATCAAAGATC AAAACCAGAATCAGAATAAGAATGGGTAAGTGAAAACATCATGATCTCTCTGTTTTTTTTTTGTTTGTATTCTTCATTGA AAAAAAAACATTAATTTTCTGTGTATCGAATTCAGTGAGTTTAGTAAATAGTAAAGAAAAATAACAAAAGCAGAGTTATG ATAAAGTTGCATTAGGAGTAGATTCAGGAGGTTTTTCTGAATGTTCATTCAACTTGACCAACTTGACCCGGGTTTTCTGT CTGATTTAATTTATGTCATTTACTCTGGCGTTTTGTCTCTACTGCTTTAACCTCTGTTACTGTTTTTTCCTTTTGAAAAT ATGAAAGAAAAGAAGCAATTGCTTTAATCAAAAGCTGAAAACAACAAAATCTAATTGATGATATGGTGGTGTAGCAGGTT GAAGGGAAAGAAGCAGAAGCAGGAGAAGCAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAAGAGCCAAGATATGCTT TCAAGACAAAGAGTGAGGTGGATAATTTGGATGATGGTTTTCGATGGCGTAAGTATGGTCAAAAAGCTGTCAAGAACAGC CCTAACCCAAGGTAATTATCAACCAAACCAAACCACACAAATCTTCTAACATGTTTGATTTCATCATGAATTGTTCATCC AGAATCAATTCTGATAAGAAACTACAAGTCTTAACTTCTGGGTAATCGTGAATCAGTGTAGATAGTGAAAACAAACATGC CATTCATTTTCATTCTCTCTCTTATTTCACTTCACATTTGTTTAGTACTGATTTTTTCTCTCTCCCTTCAACACAGGAGC TACTATCGTTGCACCACCGCTGGTTGTGGCGTGAAGAAGCGGGTGGAGCGATCCTCTGAGGACACCTCCGTGGTGGTCAC CACCTACGAAGGAGTCCACACCCATCGGTGCCCGGCTGCAAGGGGTAATTATGGTGGTGCGGCTCCTCATGGACTTGGTT CCAACCAGTATGTGCTGCCTTCACAGGCACAGAATCTCCAAGTTCAAAATTTTCAGAACCAGAATGTGCAGCAAGCTGCA CCATCTTTCTCTACAACCCCTTCTTTCAATGCTGCTACCCCTGTACCACCTATCTCCTACAGAAACGCTATTATCCCATT ACCTTTCAATGTTGCTAACCCAGCACCTAATACTCACTTTAATACTTCCTCCTTTGGGAGCTTCCTTCAAGGGATCAATG GTGTAGATTTTGTGCAGTCTTCTAGGTTTATGGCTAACAACAACCAGGGTTTGCTAAGGAACAATGGGCTTCTTCAGGAC ATGTTTGTGCCAGCTCACATGGAATTCGGAGGTGGAGGAGGACGAAGATGAGTAGATCATGGTGCTGAAGCTGATGGAGG AAGATGAGTAGATCATTAATGAACTAATTAATGATGCTTAATTATGGTATTAATGTTAACTTCATGACTTGTAAATTATT TAATATATATCTGGTATGTATGGTTCTTATCAAACTGATGTGATGAAACCTCTCTAAGTCAGGGCCTCTGAGTTGTTTTG TGTGTTTGGAGACTTCTGCTGGTGGCTTGTGTTCATATGAAACATGTTGATATTGGAGGTTCTTCCCTTTTTATTTATAG ATATGACTGTGCCCTTTTATGGCTAGATAGATAGAGAGAGAGATTTAGATTCTGATTTTGTCACTTAACTTTTTCTTCTT TCCTTCTATGGATTATTCCCTGTAACTAGATGTTTATTCCATCATCACCCATTTTAGTTTTTGTTTTAATTTGTG
CDS sequence (LotjaGi4g1v0332500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGAAGAGAGAGAAAGCAGAGAAGTCATTCAGCTGCAGCACCATGTCAAATTCTGTGGCATTTTCCGACACTGG GAATCCCAGCTTCGGCTCCATTTTCTCATTCCTCATGGAAAAGATGCCACCACCACCACCCTCACCACCACTACCACCCC TATCACCGCTACCGCTGCCACCATTTCACCAACAAACTTCCTCTTTTGGAAGCTTCAAGGACTTGTTAACAATCGAGGAT TTTGATCCTGCTTTGTTTGATTGGAACCCCACCACCACCACCAACACCGCCGCCGCTGCTGACGTCACTTCACCACCACT TTCTACCACCCAAATCAGCCACCCTGTTCCCTCCCCTGCCACCTCCAACATCCTTCCTGAGTACTCTTCTGATGTGCTCA ACACTCCAACCACCCCCAACTCCTCCTCAATCTCATCATCGACGAATGGAACAGGGAATGATCGTGCAGAACCAGAACCA GAAGCTGAGAATGATGATGATGGAGATGCCATCAAAGATCAAAACCAGAATCAGAATAAGAATGGGTTGAAGGGAAAGAA GCAGAAGCAGGAGAAGCAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAAGAGCCAAGATATGCTTTCAAGACAAAGA GTGAGGTGGATAATTTGGATGATGGTTTTCGATGGCGTAAGTATGGTCAAAAAGCTGTCAAGAACAGCCCTAACCCAAGG AGCTACTATCGTTGCACCACCGCTGGTTGTGGCGTGAAGAAGCGGGTGGAGCGATCCTCTGAGGACACCTCCGTGGTGGT CACCACCTACGAAGGAGTCCACACCCATCGGTGCCCGGCTGCAAGGGGTAATTATGGTGGTGCGGCTCCTCATGGACTTG GTTCCAACCAGTATGTGCTGCCTTCACAGGCACAGAATCTCCAAGTTCAAAATTTTCAGAACCAGAATGTGCAGCAAGCT GCACCATCTTTCTCTACAACCCCTTCTTTCAATGCTGCTACCCCTGTACCACCTATCTCCTACAGAAACGCTATTATCCC ATTACCTTTCAATGTTGCTAACCCAGCACCTAATACTCACTTTAATACTTCCTCCTTTGGGAGCTTCCTTCAAGGGATCA ATGGTGTAGATTTTGTGCAGTCTTCTAGGTTTATGGCTAACAACAACCAGGGTTTGCTAAGGAACAATGGGCTTCTTCAG GACATGTTTGTGCCAGCTCACATGGAATTCGGAGGTGGAGGAGGACGAAGATGA
Protein sequence (LotjaGi4g1v0332500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEKREKAEKSFSCSTMSNSVAFSDTGNPSFGSIFSFLMEKMPPPPPSPPLPPLSPLPLPPFHQQTSSFGSFKDLLTIED FDPALFDWNPTTTTNTAAAADVTSPPLSTTQISHPVPSPATSNILPEYSSDVLNTPTTPNSSSISSSTNGTGNDRAEPEP EAENDDDGDAIKDQNQNQNKNGLKGKKQKQEKQEKKEKKEKKEKEPRYAFKTKSEVDNLDDGFRWRKYGQKAVKNSPNPR SYYRCTTAGCGVKKRVERSSEDTSVVVTTYEGVHTHRCPAARGNYGGAAPHGLGSNQYVLPSQAQNLQVQNFQNQNVQQA APSFSTTPSFNAATPVPPISYRNAIIPLPFNVANPAPNTHFNTSSFGSFLQGINGVDFVQSSRFMANNNQGLLRNNGLLQ DMFVPAHMEFGGGGGRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 68 | 68 | - | – | |
| MobiDBLite | 12 | 33 | 22 | - | – | |
| MobiDBLite | 40 | 60 | 21 | - | – | |
| PANTHER | 65 | 345 | 281 | 2.0E-74 | – | |
| PANTHER | 65 | 345 | 281 | 2.0E-74 | – | |
| MobiDBLite | 97 | 154 | 58 | - | – | |
| MobiDBLite | 97 | 213 | 117 | - | – | |
| Coils | 180 | 205 | 26 | - | – | |
| MobiDBLite | 184 | 213 | 30 | - | – | |
| Gene3D | 204 | 280 | 77 | 2.2E-32 | ||
| SUPERFAMILY | 212 | 279 | 68 | 2.88E-28 | ||
| ProSiteProfiles | 214 | 279 | 66 | 31.605 | ||
| SMART | 219 | 278 | 60 | 9.3E-39 | ||
| Pfam | 220 | 277 | 58 | 7.8E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0332500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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