Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0332500.2

Overview

Field Value
Gene ID LotjaGi4g1v0332500
Transcript ID LotjaGi4g1v0332500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT5G49520.1 WRKY DNA-binding protein 48; Swiss-Prot: sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48; TrEMBL-Plants: tr|I1KMP6|I1KMP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0332500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:71165738..71168233) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTAAGCAGGGGACAATTCACATTATAAAAGAAATGGAGGAGAAGAGAGAGAAAGCAGAGAAGTCATTCAGCTGCAGC ACCATGTCAAATTCTGTGGCATTTTCCGACACTGGGAATCCCAGCTTCGGCTCCATTTTCTCATTCCTCATGGAAAAGAT GCCACCACCACCACCCTCACCACCACTACCACCCCTATCACCGCTACCGCTGCCACCATTTCACCAACAAACTTCCTCTT TTGGAAGCTTCAAGGACTTGTTAACAATCGAGGATTTTGATCCTGCTTTGTTTGATTGGAACCCCACCACCACCACCAAC ACCGCCGCCGCTGCTGACGTCACTTCACCACCACTTTCTACCACCCAAATCAGCCACCCTGTTCCCTCCCCTGCCACCTC CAACATCCTTCCTGAGTACTCTTCTGATGTGCTCAACACTCCAACCACCCCCAACTCCTCCTCAATCTCATCATCGACGA ATGGAACAGGGAATGATCGTGCAGAACCAGAACCAGAAGCTGAGAATGATGATGATGGAGATGCCATCAAAGATCAAAAC CAGAATCAGAATAAGAATGGGTAAGTGAAAACATCATGATCTCTCTGTTTTTTTTTTGTTTGTATTCTTCATTGAAAAAA AAACATTAATTTTCTGTGTATCGAATTCAGTGAGTTTAGTAAATAGTAAAGAAAAATAACAAAAGCAGAGTTATGATAAA GTTGCATTAGGAGTAGATTCAGGAGGTTTTTCTGAATGTTCATTCAACTTGACCAACTTGACCCGGGTTTTCTGTCTGAT TTAATTTATGTCATTTACTCTGGCGTTTTGTCTCTACTGCTTTAACCTCTGTTACTGTTTTTTCCTTTTGAAAATATGAA AGAAAAGAAGCAATTGCTTTAATCAAAAGCTGAAAACAACAAAATCTAATTGATGATATGGTGGTGTAGCAGGTTGAAGG GAAAGAAGCAGAAGCAGGAGAAGCAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAAGAGCCAAGATATGCTTTCAAG ACAAAGAGTGAGGTGGATAATTTGGATGATGGTTTTCGATGGCGTAAGTATGGTCAAAAAGCTGTCAAGAACAGCCCTAA CCCAAGGTAATTATCAACCAAACCAAACCACACAAATCTTCTAACATGTTTGATTTCATCATGAATTGTTCATCCAGAAT CAATTCTGATAAGAAACTACAAGTCTTAACTTCTGGGTAATCGTGAATCAGTGTAGATAGTGAAAACAAACATGCCATTC ATTTTCATTCTCTCTCTTATTTCACTTCACATTTGTTTAGTACTGATTTTTTCTCTCTCCCTTCAACACAGGAGCTACTA TCGTTGCACCACCGCTGGTTGTGGCGTGAAGAAGCGGGTGGAGCGATCCTCTGAGGACACCTCCGTGGTGGTCACCACCT ACGAAGGAGTCCACACCCATCGGTGCCCGGCTGCAAGGGGTAATTATGGTGGTGCGGCTCCTCATGGACTTGGTTCCAAC CAGTATGTGCTGCCTTCACAGGCACAGAATCTCCAAGTTCAAAATTTTCAGAACCAGAATGTGCAGCAAGCTGCACCATC TTTCTCTACAACCCCTTCTTTCAATGCTGCTACCCCTGTACCACCTATCTCCTACAGAAACGCTATTATCCCATTACCTT TCAATGTTGCTAACCCAGCACCTAATACTCACTTTAATACTTCCTCCTTTGGGAGCTTCCTTCAAGGGATCAATGGTGTA GATTTTGTGCAGTCTTCTAGGTTTATGGCTAACAACAACCAGGGTTTGCTAAGGAACAATGGGCTTCTTCAGGACATGTT TGTGCCAGCTCACATGGAATTCGGAGGTGGAGGAGGACGAAGATGAGTAGATCATGGTGCTGAAGCTGATGGAGGAAGAT GAGTAGATCATTAATGAACTAATTAATGATGCTTAATTATGGTATTAATGTTAACTTCATGACTTGTAAATTATTTAATA TATATCTGGTATGTATGGTTCTTATCAAACTGATGTGATGAAACCTCTCTAAGTCAGGGCCTCTGAGTTGTTTTGTGTGT TTGGAGACTTCTGCTGGTGGCTTGTGTTCATATGAAACATGTTGATATTGGAGGTTCTTCCCTTTTTATTTATAGATATG ACTGTGCCCTTTTATGGCTAGATAGATAGAGAGAGAGATTTAGATTCTGATTTTGTCACTTAACTTTTTCTTCTTTCCTT CTATGGATTATTCCCTGTAACTAGATGTTTATTCCATCATCACCCATTTTAGTTTTTGTTTTAATTTGTGTCATCGTTTT TCTCATGTCATTCACATTATATATATTCTCCTTGAGTGCATGTCTTGTTGGATAGGATTAATCAATTATTATTGATGGTG GCAAACCCAATAGTTTTAGGGTTAGGGTTTTGACTTGCATGTGATGAAATCTTGTAGCTAGTTTAGGTGCATAACTTTTC CCACCCAGATATATGC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0332500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGAAGAGAGAGAAAGCAGAGAAGTCATTCAGCTGCAGCACCATGTCAAATTCTGTGGCATTTTCCGACACTGG GAATCCCAGCTTCGGCTCCATTTTCTCATTCCTCATGGAAAAGATGCCACCACCACCACCCTCACCACCACTACCACCCC TATCACCGCTACCGCTGCCACCATTTCACCAACAAACTTCCTCTTTTGGAAGCTTCAAGGACTTGTTAACAATCGAGGAT TTTGATCCTGCTTTGTTTGATTGGAACCCCACCACCACCACCAACACCGCCGCCGCTGCTGACGTCACTTCACCACCACT TTCTACCACCCAAATCAGCCACCCTGTTCCCTCCCCTGCCACCTCCAACATCCTTCCTGAGTACTCTTCTGATGTGCTCA ACACTCCAACCACCCCCAACTCCTCCTCAATCTCATCATCGACGAATGGAACAGGGAATGATCGTGCAGAACCAGAACCA GAAGCTGAGAATGATGATGATGGAGATGCCATCAAAGATCAAAACCAGAATCAGAATAAGAATGGCAGGTTGAAGGGAAA GAAGCAGAAGCAGGAGAAGCAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAAGAGCCAAGATATGCTTTCAAGACAA AGAGTGAGGTGGATAATTTGGATGATGGTTTTCGATGGCGTAAGTATGGTCAAAAAGCTGTCAAGAACAGCCCTAACCCA AGGAGCTACTATCGTTGCACCACCGCTGGTTGTGGCGTGAAGAAGCGGGTGGAGCGATCCTCTGAGGACACCTCCGTGGT GGTCACCACCTACGAAGGAGTCCACACCCATCGGTGCCCGGCTGCAAGGGGTAATTATGGTGGTGCGGCTCCTCATGGAC TTGGTTCCAACCAGTATGTGCTGCCTTCACAGGCACAGAATCTCCAAGTTCAAAATTTTCAGAACCAGAATGTGCAGCAA GCTGCACCATCTTTCTCTACAACCCCTTCTTTCAATGCTGCTACCCCTGTACCACCTATCTCCTACAGAAACGCTATTAT CCCATTACCTTTCAATGTTGCTAACCCAGCACCTAATACTCACTTTAATACTTCCTCCTTTGGGAGCTTCCTTCAAGGGA TCAATGGTGTAGATTTTGTGCAGTCTTCTAGGTTTATGGCTAACAACAACCAGGGTTTGCTAAGGAACAATGGGCTTCTT CAGGACATGTTTGTGCCAGCTCACATGGAATTCGGAGGTGGAGGAGGACGAAGATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0332500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEKREKAEKSFSCSTMSNSVAFSDTGNPSFGSIFSFLMEKMPPPPPSPPLPPLSPLPLPPFHQQTSSFGSFKDLLTIED FDPALFDWNPTTTTNTAAAADVTSPPLSTTQISHPVPSPATSNILPEYSSDVLNTPTTPNSSSISSSTNGTGNDRAEPEP EAENDDDGDAIKDQNQNQNKNGRLKGKKQKQEKQEKKEKKEKKEKEPRYAFKTKSEVDNLDDGFRWRKYGQKAVKNSPNP RSYYRCTTAGCGVKKRVERSSEDTSVVVTTYEGVHTHRCPAARGNYGGAAPHGLGSNQYVLPSQAQNLQVQNFQNQNVQQ AAPSFSTTPSFNAATPVPPISYRNAIIPLPFNVANPAPNTHFNTSSFGSFLQGINGVDFVQSSRFMANNNQGLLRNNGLL QDMFVPAHMEFGGGGGRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 68 68 - –
MobiDBLite
mobidb-lite
12 33 22 - –
MobiDBLite
mobidb-lite
40 60 21 - –
PANTHER
PTHR31221:SF170
65 346 282 3.0E-74 –
PANTHER
PTHR31221
65 346 282 3.0E-74 –
MobiDBLite
mobidb-lite
97 214 118 - –
MobiDBLite
mobidb-lite
97 154 58 - –
Coils
Coil
181 206 26 - –
MobiDBLite
mobidb-lite
188 214 27 - –
Gene3D
G3DSA:2.20.25.80
205 281 77 2.2E-32
IPR036576
SUPERFAMILY
SSF118290
213 280 68 2.88E-28
IPR036576
ProSiteProfiles
PS50811
215 280 66 31.605
IPR003657
SMART
SM00774
220 279 60 9.3E-39
IPR003657
Pfam
PF03106
221 278 58 7.8E-26
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0332500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…