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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0333700 |
| Transcript ID | LotjaGi4g1v0333700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CAS1 domain-containing protein 1; TAIR: AT3G06550.3 O-acetyltransferase family protein; Swiss-Prot: sp|Q0WW17|RWA2_ARATH Protein REDUCED WALL ACETYLATION 2; TrEMBL-Plants: tr|V7CAW3|V7CAW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0333700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71280827..71286746) extracted from Lotus japonicus Gifu genome v1.2.
CACATGTTGTTTCACTCAAATACTTGCTCTCATTAGTCATCTTCTTCTTATTGTTTTTTTTTTTTTTCCATTCAATTTTT GAAGTTTATAAATAAGATTTGTCGGTGTCACGAAGCCTAACTTCTATACATTCAATTCAATGCTGGATGCTTGGTTTCTA CACTCCACTAGCAAGCACCACTTTCCTTACACAGGAATTTAGTTTCGCAAATCTCCAGATCTCGTCGTCGATCACCGTCA AATCGCTCTCTTCTTCGAATGCCACTGCCGCCACCACCGCCGCAGTTCCTCTGATTCGAAATGCATTTCTTCAGTCCAGT AACTCCCGGCCAGGTCGATTCAAGCTTCTTCCGCTCTCAGATCTTGCTCCGATCACTATGATTTCTCACCGCTACTGTGC GCGATTTTGTTTTTCATTTTCATTTTCCGATGCTTGCAGGTCTCGTTCTTGCTCGGAATCGTTCCAGTCATTGTAGCGTG GATTTCTTCCGAGATTTTGGAGTATCGCAAAAACTCCGTCCCCTCCAAACTGTAAGTTTCATCGATTCTTCTTATATAGC TAGCGTGAGTCTCTAATTTCGCGTGCTGGTACTGTAGAATGTGTGCGTTTTCTGGAATGTAGCGTCTGCGACTTTGGAGA TTGTCATAGTTGCGTGTAATTTTGCAATAAGCTATTAACTGTTGTTTTCAATTTCTTAGAACTGATTTTTTTTCTTTCTA TAATGTGATTATGAGCTAATTAATAACATAATTGGATAAGTTTCTCTTTTGCCAGAATCAATTTTGGTATGTAGAAGCTA ATTATAAAAGCAATTAAATGGCAGAGTTTAAGTATTTAGGGAGTGAAAAATCTTGTTGGGAGGTTGTTCCAAGAATATTG TGAGAAGGGAGAGAAGAAAAGTAAGAATTTGTTGTTTGTATTCCTTATGGAAGTTTTTGTCTCTTCTAGTAGGCTCTCGG ACATCAGCTTAGTTGAAGTGCGCAGTGATGTCGTTAAAGATGAAGACAAAGAAGTTTTATTGGAGGGAGGAGCTCAACAG CCAGCTTCCCCAAAACCTCGAGGCTTAACTGCCTCATCACCAATTTTCCGGTTTGTAATTCATGTAGTTCTGGCTTTTGC TTGTTTAAATTGTGGTTTTGTATTTCTGTCTTTGCTTAAACTAATACTCTCGGGGTACTTGGCCTATTCCAGATTCCTTT TGATGGATGAATGTTTCCTTATTGAAAACCGTTTGACGCTTAGAGCAATGTAAGTGAATCTTATGATAAGAGAAAAATTT ATATATTTGTATACGTGGATCAAACTGTTCACATCTGTTTCCTTCACTCTTTTGCTGTTACAGGTCTGAATTTGGTCTCC TTTTAGCTTACTTTTATTTGTGCGACCGCACTGATTTCTTTGGCTCATCCAAGAAGGTAAATAATTTTATGCTTGCCACT AATCTTGGGATTGGATAGTCACTTTAGAGTATTGCGGCATGACATTTTAGCTTGATTCCAACTGTCATCTTTATGGTGTT TCAACATAATTGCATCTTTTGTTGTAGTACTCCATGTTTCTGTCATTGGCGTAGCCCTCATTGACAGACACCTTCATTTG GTTTTCAAACACTGGTACAAGGGATTTTTTTAGTACATATTGAAATTCTATCATAATACTCCTAAATATTAGATATCCAT TTGTTGAAATCATAAGGAAACCTATAGCAGAATGAAGAAAAAAAAAATTGGTCATGTTTGTTTTGCAAGATGAAAATAAA ACATAATTAGCTGAAAAGTGGAGATCAGTGGAAGAAGTATTAGAGAGAAACAATCCAGTCTTACCGTATTTCCCTGATTT CTTGTAAGCTCGGTATTTTGGAAAAACCTTCATAGACCTTCCCCGAATTTTAATGGTTTTGAAATACCGGGTGGTCCATT TGAAATTTGGAAAAAATCCAAGGAAAATTGAACCATTTCTCTGGAAGAGTTCCCTGGCAAACCATTGAACTCAATCATAA AGAGGGGGTGGAGGCGGTGAAAGAATGGAATTACTTGTCCCATGAATACATGCACAATTTACCAACTTAGCAGCAAGAAC CCAACGCAAATGGTCATAGGGCATAATTTAGTCTTCCAAATTGTGTGGGGCTTTATCCATGAAAATATTTATATGTCTTT GAAAAACTTGTTCGTCATATAGCTGTCATGCATTACTGATATGACATTTTTGGTGGTCGATCATCTGTTTTTGCAGAGTT ACAATAGAGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCAGCTGTGACTTCCTTTAAGATACATAATGAC AAGTCACCATTTTCTGGGAAATCCATACTTTACTTAAATCGGCATCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTGG TCACTCTTTCAATTCATATTACTGAAGTCTGAAGTGGTCTCTGTCATTTATGATTGAAATACTTTCTGTGCAACTTCTGA ATTATGATAGTTCAGGTCCAGAATTGATAAATTTAGTATTACAAAGGAAGCACAATTCAGTTTTGGTCTATATTTTTTCA TCAGATCTTCTGATTATTCAATTCTTGTGGTGCTTAATTTAATATTGTAAATTCTTCAAAATTTAACTTTCCATATTTCT ACCATTTGATATTGTCACAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAATTCTACAATGCAATTCGTTTG TTCATTGCTGCATATGTCTGGATGACTGGATTTGGGAACTTCTCATATTATTATATTCGCAAAGATTTTAGTCTAGTAAG ATTTGCTCAGGTATGCCATTTTCTAAAACTATAGAAGGTTGCTTTTTCAACTTTGGTCTGTTTGGTCTGTACTAACTTTA TCATCTTCCGTGCTTTTTCTGGTTGTGCAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTCTGTTGTCTTGTACTTAA CAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGAATTCTCA ACAAGTACAATGAGATTGGCTCAGTCATTGCTGTAAAATTCATTGCTTGCTTCTTGGTTGTTGTCATACTATGGGAGATA CCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACATTCATGCTCGGTTAGTAACATTTATGATGTTTGGCTACACGCTT GAAACCACAGCAGATCATGCTGACTGTAATGTTCCTTTGAACTCACAGGTTATACAGATCCTTCCAAATTGCAACTTCCC CGCTTGCATGAATGGCATTTTCGCTCAGGGCTTGATCGCTACATATGGATAATAGGAATGATTTATGCTTATTATCATCC AACTGTAAGTTTCTCTTCTTTTTTTCTTTGAACTAATTGAGACCAATCTAACATTTACTTACCCTCTGATCGAGTGATAC TCTGAAGTGGGAGAAATATCTGATTTCTTTATCTCTTCCTTTCTTTTTTCCTCTAAGTTTAGCACTTTAGTAACTATTAA AGGTATTAATAGGTTGAGCGATGGATGGAGAAGTTGGAGGAAGCAGAAATCAAGCGCAGAATATCAATAAAAGCTACTGT TGTGCTGATATGCTCTGTGGTATTATATATTTCTAGTGATATTATTGTATTGGTACACCTTCAATTTGTATTATTTTTGT GGCACTGACCAATTGAGTTAATTTCTAGGTGGGTTATTTATGGTTTGAGTATATATACAAGCTCGACAAGCTCACATACA ATAAATACCATCCTTATACCTCATGGATTCCCATAACGTATGTCCATTTTCCTTGATTTTTTTGGCCCTTGAGCTATTCA AGGCCTTTCTACTTATTAATGTGAATCTGTTTTATTTAACAGGGTTTACATATGTTTGCGAAATGTTACACAAAGTCTTC GTAGCTATTCATTGACCCTTTTTGCGTAAGTTGTCTTTGTAAACTACAGCTCTTATTCATCTCTCCCTGCTCCATTTCTT CCTCCCTCATAAACATGCACCAACGTGCATTCATATTTAATGAGCTAATTTATGTTGAATGCTGTCAAGTATCCATATGA ATATGATGCATAGCTTCCTTTTACTTTGTTTAAGGTTGTTAGTTTATGAACTAATTTTCCATTGCTTCTACTTTCTGCTA GATGGCTTGGGAAGGTTACACTGGAGACCTACATCTCCCAGATCCATATCTGGTTAAGGTACTCAGAAGCTGATTTTTTT GCTTTTAACATTTACCAGTGCTTTACTAGATAGACTCGTTTGGTTACACCTTTCAATGTTAAGCATGTAACTTTGAAATC CATTTTTTTCTTTTGGGATTTAACTTTGAATATCTAAAAACACTTTCCTAGTTTTTTTTATATATAACTAATAAATAATT TCAGTTATTCCAATTTACTATAGCATAAAATTACAAATTTTTTACAGACATCATAGCAACAAATAATGCTTTACAATAGT AATGAGTATTTTAAACTGTTTTACTTAAAGAAATTTTACTGATCGAAACAAAGCTTTTCAGTTTAAAAAATTATTAAACT TTAGTGAATGTTGAAGTGGAAAAGGCATAGCATACGGCCGTGGATAATTAATTACATGCACAAAAGGTTATATGTTGCAT GCCTGATGCAACTTGTGTATGTGTATAATTATTTCTTTGTTTTCTATCAGTTATTAATTGTTTGTTTCTCTGTCATGGGT TGATTTCAGGTCAGCTGTTCCAGATGCTCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCGATGTTGAACTTCA TGCTTACTACTTCCATATATCTTGCAGTAAGTAAACAGCATAGATGGATTGAGATTATTTATGTTGATTTATTCTGATTT ATATCTACTTGCCTGCAGATTTCCTATAGGCTCTTCGACCTGACCAATACACTGAAAGTGGCATTTGTGCCCAGCAAAGA TAACAAGCGTCTTACATCCAACTTTATTACAGCAACAACACTCTCAGTTGTTTTATATTCTCTGTCCTTTGTCTTCCTTA GGATACCTCAAATGTGGGTGAGTGCTATTACTCTAACTTGATATGGTTTGAGTCATTTATACATCCTTACTTCTGGAAAA AAAATTGGGCTCTTCAGGAGTAGGTACTTGATCCATTCAAATACAAACATCTGACATGTACATGGACATGCGCAGATGCG CTTTTCATGCATGTATGCTTTACATAAATGAAATGCAGTCGACTTATGTACAACAGCATAAATTGAAATTTCTATTTGCA TCTTATAGCATTATGCATCTATCTAAATACTCTATCTAAATACTCATGAACTTGCAGGTTTGAGAATTTAGACATGTATA GTATATGATGCTGCAAGCTTCTATGCCAGTTTCCAATGCACACAGAAGAAACTGCAACTGCTACAATTGGTTTATTGGCA AGCCAAAACTTTACCGAAAGACGCGAAGTCTTATCTACAGAAGGAAGAGTGATCATTCTAATAGGCTAGTGGCTCCAATA TTTGAGAGTTGAAAGTTGTATAGATAAGAGAGTGGCGGATGGCATGCCTAGTTTTAATCATGCAACCTCATTCTTTTTGT CAGTGTTGTAAAATAATAATGCTTGTAATCCCATAGGACTTTATGTCAAATAGTGCGTGCCATTTTTAACTTATGTATCT TGACCAAACTCAATTTTGTGAGAAGTAACCATATAACTGTTTCTAGATTTTTTTTAAAAATGATTACTTTTATATTCCAA AATACATGTGAGATTAACTTCACATATATCAATTATGTATTAAATAATAGTAAAATTTTATAGGTATGGTCTCAAATTTC ACATTGGGATTATATGTTTTCCTATTTTTGTGATAAATTTGAGGCTTAACTGCTCAGGAAACTTAAGGAGCCATTCGGGG
CDS sequence (LotjaGi4g1v0333700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTCTTCAGTCCAGTAACTCCCGGCCAGGTCTCGTTCTTGCTCGGAATCGTTCCAGTCATTGTAGCGTGGATTTC TTCCGAGATTTTGGAGTATCGCAAAAACTCCGTCCCCTCCAAACTGCTCTCGGACATCAGCTTAGTTGAAGTGCGCAGTG ATGTCGTTAAAGATGAAGACAAAGAAGTTTTATTGGAGGGAGGAGCTCAACAGCCAGCTTCCCCAAAACCTCGAGGCTTA ACTGCCTCATCACCAATTTTCCGATTCCTTTTGATGGATGAATGTTTCCTTATTGAAAACCGTTTGACGCTTAGAGCAAT GTCTGAATTTGGTCTCCTTTTAGCTTACTTTTATTTGTGCGACCGCACTGATTTCTTTGGCTCATCCAAGAAGAGTTACA ATAGAGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCAGCTGTGACTTCCTTTAAGATACATAATGACAAG TCACCATTTTCTGGGAAATCCATACTTTACTTAAATCGGCATCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTTGTT TTTGATGTACCATTACTTTGCTGCATCTGAATTCTACAATGCAATTCGTTTGTTCATTGCTGCATATGTCTGGATGACTG GATTTGGGAACTTCTCATATTATTATATTCGCAAAGATTTTAGTCTAGTAAGATTTGCTCAGATGATGTGGCGGCTTAAT TTCTTGGTATTGTTCTGTTGTCTTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCAC TCTTATGGTTTATGGGGCACTTGGAATTCTCAACAAGTACAATGAGATTGGCTCAGTCATTGCTGTAAAATTCATTGCTT GCTTCTTGGTTGTTGTCATACTATGGGAGATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACATTCATGCTCGGT TATACAGATCCTTCCAAATTGCAACTTCCCCGCTTGCATGAATGGCATTTTCGCTCAGGGCTTGATCGCTACATATGGAT AATAGGAATGATTTATGCTTATTATCATCCAACTGTTGAGCGATGGATGGAGAAGTTGGAGGAAGCAGAAATCAAGCGCA GAATATCAATAAAAGCTACTGTTGTGCTGATATGCTCTGTGGTGGGTTATTTATGGTTTGAGTATATATACAAGCTCGAC AAGCTCACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGTTTGCGAAATGTTACACA AAGTCTTCGTAGCTATTCATTGACCCTTTTTGCATGGCTTGGGAAGGTTACACTGGAGACCTACATCTCCCAGATCCATA TCTGGTTAAGGTCAGCTGTTCCAGATGCTCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCGATGTTGAACTTC ATGCTTACTACTTCCATATATCTTGCAATTTCCTATAGGCTCTTCGACCTGACCAATACACTGAAAGTGGCATTTGTGCC CAGCAAAGATAACAAGCGTCTTACATCCAACTTTATTACAGCAACAACACTCTCAGTTGTTTTATATTCTCTGTCCTTTG TCTTCCTTAGGATACCTCAAATGTGGGTTTGA
Protein sequence (LotjaGi4g1v0333700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFFSPVTPGQVSFLLGIVPVIVAWISSEILEYRKNSVPSKLLSDISLVEVRSDVVKDEDKEVLLEGGAQQPASPKPRGL TASSPIFRFLLMDECFLIENRLTLRAMSEFGLLLAYFYLCDRTDFFGSSKKSYNRDLFLFLYFLLIIVSAVTSFKIHNDK SPFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEFYNAIRLFIAAYVWMTGFGNFSYYYIRKDFSLVRFAQMMWRLN FLVLFCCLVLNNSYMLYYICPMHTLFTLMVYGALGILNKYNEIGSVIAVKFIACFLVVVILWEIPGVFEWVWSPFTFMLG YTDPSKLQLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEAEIKRRISIKATVVLICSVVGYLWFEYIYKLD KLTYNKYHPYTSWIPITVYICLRNVTQSLRSYSLTLFAWLGKVTLETYISQIHIWLRSAVPDAQPKLLLSLIPDYPMLNF MLTTSIYLAISYRLFDLTNTLKVAFVPSKDNKRLTSNFITATTLSVVLYSLSFVFLRIPQMWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 0.0 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 539 | 539 | 0.0 | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 101 | 70 | - | – | |
| Phobius | 102 | 119 | 18 | - | – | |
| Pfam | 103 | 514 | 412 | 1.1E-97 | ||
| Phobius | 120 | 138 | 19 | - | – | |
| TMHMM | 137 | 154 | 18 | - | – | |
| Phobius | 139 | 158 | 20 | - | – | |
| Phobius | 159 | 178 | 20 | - | – | |
| Phobius | 179 | 195 | 17 | - | – | |
| Phobius | 196 | 200 | 5 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 201 | 223 | 23 | - | – | |
| Phobius | 224 | 234 | 11 | - | – | |
| Phobius | 235 | 256 | 22 | - | – | |
| TMHMM | 236 | 255 | 20 | - | – | |
| Phobius | 257 | 261 | 5 | - | – | |
| TMHMM | 259 | 278 | 20 | - | – | |
| Phobius | 262 | 280 | 19 | - | – | |
| Phobius | 281 | 291 | 11 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 292 | 315 | 24 | - | – | |
| Phobius | 316 | 334 | 19 | - | – | |
| Phobius | 335 | 355 | 21 | - | – | |
| TMHMM | 344 | 363 | 20 | - | – | |
| Phobius | 356 | 374 | 19 | - | – | |
| Phobius | 375 | 395 | 21 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| Phobius | 396 | 406 | 11 | - | – | |
| Phobius | 407 | 425 | 19 | - | – | |
| TMHMM | 407 | 426 | 20 | - | – | |
| Phobius | 426 | 436 | 11 | - | – | |
| TMHMM | 433 | 455 | 23 | - | – | |
| Phobius | 437 | 456 | 20 | - | – | |
| Phobius | 457 | 475 | 19 | - | – | |
| TMHMM | 475 | 494 | 20 | - | – | |
| Phobius | 476 | 495 | 20 | - | – | |
| Phobius | 496 | 515 | 20 | - | – | |
| TMHMM | 514 | 536 | 23 | - | – | |
| Phobius | 516 | 538 | 23 | - | – | |
| Phobius | 539 | 543 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0333700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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