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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0333700 |
| Transcript ID | LotjaGi4g1v0333700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CAS1 domain-containing protein 1; TAIR: AT3G06550.1 O-acetyltransferase family protein; Swiss-Prot: sp|Q0WW17|RWA2_ARATH Protein REDUCED WALL ACETYLATION 2; TrEMBL-Plants: tr|V7CAW3|V7CAW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0333700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71280827..71286746) extracted from Lotus japonicus Gifu genome v1.2.
CACATGTTGTTTCACTCAAATACTTGCTCTCATTAGTCATCTTCTTCTTATTGTTTTTTTTTTTTTTCCATTCAATTTTT GAAGTTTATAAATAAGATTTGTCGGTGTCACGAAGCCTAACTTCTATACATTCAATTCAATGCTGGATGCTTGGTTTCTA CACTCCACTAGCAAGCACCACTTTCCTTACACAGGAATTTAGTTTCGCAAATCTCCAGATCTCGTCGTCGATCACCGTCA AATCGCTCTCTTCTTCGAATGCCACTGCCGCCACCACCGCCGCAGTTCCTCTGATTCGAAATGCATTTCTTCAGTCCAGT AACTCCCGGCCAGGTCGATTCAAGCTTCTTCCGCTCTCAGATCTTGCTCCGATCACTATGATTTCTCACCGCTACTGTGC GCGATTTTGTTTTTCATTTTCATTTTCCGATGCTTGCAGGTCTCGTTCTTGCTCGGAATCGTTCCAGTCATTGTAGCGTG GATTTCTTCCGAGATTTTGGAGTATCGCAAAAACTCCGTCCCCTCCAAACTGTAAGTTTCATCGATTCTTCTTATATAGC TAGCGTGAGTCTCTAATTTCGCGTGCTGGTACTGTAGAATGTGTGCGTTTTCTGGAATGTAGCGTCTGCGACTTTGGAGA TTGTCATAGTTGCGTGTAATTTTGCAATAAGCTATTAACTGTTGTTTTCAATTTCTTAGAACTGATTTTTTTTCTTTCTA TAATGTGATTATGAGCTAATTAATAACATAATTGGATAAGTTTCTCTTTTGCCAGAATCAATTTTGGTATGTAGAAGCTA ATTATAAAAGCAATTAAATGGCAGAGTTTAAGTATTTAGGGAGTGAAAAATCTTGTTGGGAGGTTGTTCCAAGAATATTG TGAGAAGGGAGAGAAGAAAAGTAAGAATTTGTTGTTTGTATTCCTTATGGAAGTTTTTGTCTCTTCTAGTAGGCTCTCGG ACATCAGCTTAGTTGAAGTGCGCAGTGATGTCGTTAAAGATGAAGACAAAGAAGTTTTATTGGAGGGAGGAGCTCAACAG CCAGCTTCCCCAAAACCTCGAGGCTTAACTGCCTCATCACCAATTTTCCGGTTTGTAATTCATGTAGTTCTGGCTTTTGC TTGTTTAAATTGTGGTTTTGTATTTCTGTCTTTGCTTAAACTAATACTCTCGGGGTACTTGGCCTATTCCAGATTCCTTT TGATGGATGAATGTTTCCTTATTGAAAACCGTTTGACGCTTAGAGCAATGTAAGTGAATCTTATGATAAGAGAAAAATTT ATATATTTGTATACGTGGATCAAACTGTTCACATCTGTTTCCTTCACTCTTTTGCTGTTACAGGTCTGAATTTGGTCTCC TTTTAGCTTACTTTTATTTGTGCGACCGCACTGATTTCTTTGGCTCATCCAAGAAGGTAAATAATTTTATGCTTGCCACT AATCTTGGGATTGGATAGTCACTTTAGAGTATTGCGGCATGACATTTTAGCTTGATTCCAACTGTCATCTTTATGGTGTT TCAACATAATTGCATCTTTTGTTGTAGTACTCCATGTTTCTGTCATTGGCGTAGCCCTCATTGACAGACACCTTCATTTG GTTTTCAAACACTGGTACAAGGGATTTTTTTAGTACATATTGAAATTCTATCATAATACTCCTAAATATTAGATATCCAT TTGTTGAAATCATAAGGAAACCTATAGCAGAATGAAGAAAAAAAAAATTGGTCATGTTTGTTTTGCAAGATGAAAATAAA ACATAATTAGCTGAAAAGTGGAGATCAGTGGAAGAAGTATTAGAGAGAAACAATCCAGTCTTACCGTATTTCCCTGATTT CTTGTAAGCTCGGTATTTTGGAAAAACCTTCATAGACCTTCCCCGAATTTTAATGGTTTTGAAATACCGGGTGGTCCATT TGAAATTTGGAAAAAATCCAAGGAAAATTGAACCATTTCTCTGGAAGAGTTCCCTGGCAAACCATTGAACTCAATCATAA AGAGGGGGTGGAGGCGGTGAAAGAATGGAATTACTTGTCCCATGAATACATGCACAATTTACCAACTTAGCAGCAAGAAC CCAACGCAAATGGTCATAGGGCATAATTTAGTCTTCCAAATTGTGTGGGGCTTTATCCATGAAAATATTTATATGTCTTT GAAAAACTTGTTCGTCATATAGCTGTCATGCATTACTGATATGACATTTTTGGTGGTCGATCATCTGTTTTTGCAGAGTT ACAATAGAGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCAGCTGTGACTTCCTTTAAGATACATAATGAC AAGTCACCATTTTCTGGGAAATCCATACTTTACTTAAATCGGCATCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTGG TCACTCTTTCAATTCATATTACTGAAGTCTGAAGTGGTCTCTGTCATTTATGATTGAAATACTTTCTGTGCAACTTCTGA ATTATGATAGTTCAGGTCCAGAATTGATAAATTTAGTATTACAAAGGAAGCACAATTCAGTTTTGGTCTATATTTTTTCA TCAGATCTTCTGATTATTCAATTCTTGTGGTGCTTAATTTAATATTGTAAATTCTTCAAAATTTAACTTTCCATATTTCT ACCATTTGATATTGTCACAGGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAATTCTACAATGCAATTCGTTTG TTCATTGCTGCATATGTCTGGATGACTGGATTTGGGAACTTCTCATATTATTATATTCGCAAAGATTTTAGTCTAGTAAG ATTTGCTCAGGTATGCCATTTTCTAAAACTATAGAAGGTTGCTTTTTCAACTTTGGTCTGTTTGGTCTGTACTAACTTTA TCATCTTCCGTGCTTTTTCTGGTTGTGCAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTCTGTTGTCTTGTACTTAA CAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGAATTCTCA ACAAGTACAATGAGATTGGCTCAGTCATTGCTGTAAAATTCATTGCTTGCTTCTTGGTTGTTGTCATACTATGGGAGATA CCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACATTCATGCTCGGTTAGTAACATTTATGATGTTTGGCTACACGCTT GAAACCACAGCAGATCATGCTGACTGTAATGTTCCTTTGAACTCACAGGTTATACAGATCCTTCCAAATTGCAACTTCCC CGCTTGCATGAATGGCATTTTCGCTCAGGGCTTGATCGCTACATATGGATAATAGGAATGATTTATGCTTATTATCATCC AACTGTAAGTTTCTCTTCTTTTTTTCTTTGAACTAATTGAGACCAATCTAACATTTACTTACCCTCTGATCGAGTGATAC TCTGAAGTGGGAGAAATATCTGATTTCTTTATCTCTTCCTTTCTTTTTTCCTCTAAGTTTAGCACTTTAGTAACTATTAA AGGTATTAATAGGTTGAGCGATGGATGGAGAAGTTGGAGGAAGCAGAAATCAAGCGCAGAATATCAATAAAAGCTACTGT TGTGCTGATATGCTCTGTGGTATTATATATTTCTAGTGATATTATTGTATTGGTACACCTTCAATTTGTATTATTTTTGT GGCACTGACCAATTGAGTTAATTTCTAGGTGGGTTATTTATGGTTTGAGTATATATACAAGCTCGACAAGCTCACATACA ATAAATACCATCCTTATACCTCATGGATTCCCATAACGTATGTCCATTTTCCTTGATTTTTTTGGCCCTTGAGCTATTCA AGGCCTTTCTACTTATTAATGTGAATCTGTTTTATTTAACAGGGTTTACATATGTTTGCGAAATGTTACACAAAGTCTTC GTAGCTATTCATTGACCCTTTTTGCGTAAGTTGTCTTTGTAAACTACAGCTCTTATTCATCTCTCCCTGCTCCATTTCTT CCTCCCTCATAAACATGCACCAACGTGCATTCATATTTAATGAGCTAATTTATGTTGAATGCTGTCAAGTATCCATATGA ATATGATGCATAGCTTCCTTTTACTTTGTTTAAGGTTGTTAGTTTATGAACTAATTTTCCATTGCTTCTACTTTCTGCTA GATGGCTTGGGAAGGTTACACTGGAGACCTACATCTCCCAGATCCATATCTGGTTAAGGTACTCAGAAGCTGATTTTTTT GCTTTTAACATTTACCAGTGCTTTACTAGATAGACTCGTTTGGTTACACCTTTCAATGTTAAGCATGTAACTTTGAAATC CATTTTTTTCTTTTGGGATTTAACTTTGAATATCTAAAAACACTTTCCTAGTTTTTTTTATATATAACTAATAAATAATT TCAGTTATTCCAATTTACTATAGCATAAAATTACAAATTTTTTACAGACATCATAGCAACAAATAATGCTTTACAATAGT AATGAGTATTTTAAACTGTTTTACTTAAAGAAATTTTACTGATCGAAACAAAGCTTTTCAGTTTAAAAAATTATTAAACT TTAGTGAATGTTGAAGTGGAAAAGGCATAGCATACGGCCGTGGATAATTAATTACATGCACAAAAGGTTATATGTTGCAT GCCTGATGCAACTTGTGTATGTGTATAATTATTTCTTTGTTTTCTATCAGTTATTAATTGTTTGTTTCTCTGTCATGGGT TGATTTCAGGTCAGCTGTTCCAGATGCTCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCGATGTTGAACTTCA TGCTTACTACTTCCATATATCTTGCAGTAAGTAAACAGCATAGATGGATTGAGATTATTTATGTTGATTTATTCTGATTT ATATCTACTTGCCTGCAGATTTCCTATAGGCTCTTCGACCTGACCAATACACTGAAAGTGGCATTTGTGCCCAGCAAAGA TAACAAGCGTCTTACATCCAACTTTATTACAGCAACAACACTCTCAGTTGTTTTATATTCTCTGTCCTTTGTCTTCCTTA GGATACCTCAAATGTGGGTGAGTGCTATTACTCTAACTTGATATGGTTTGAGTCATTTATACATCCTTACTTCTGGAAAA AAAATTGGGCTCTTCAGGAGTAGGTACTTGATCCATTCAAATACAAACATCTGACATGTACATGGACATGCGCAGATGCG CTTTTCATGCATGTATGCTTTACATAAATGAAATGCAGTCGACTTATGTACAACAGCATAAATTGAAATTTCTATTTGCA TCTTATAGCATTATGCATCTATCTAAATACTCTATCTAAATACTCATGAACTTGCAGGTTTGAGAATTTAGACATGTATA GTATATGATGCTGCAAGCTTCTATGCCAGTTTCCAATGCACACAGAAGAAACTGCAACTGCTACAATTGGTTTATTGGCA AGCCAAAACTTTACCGAAAGACGCGAAGTCTTATCTACAGAAGGAAGAGTGATCATTCTAATAGGCTAGTGGCTCCAATA TTTGAGAGTTGAAAGTTGTATAGATAAGAGAGTGGCGGATGGCATGCCTAGTTTTAATCATGCAACCTCATTCTTTTTGT CAGTGTTGTAAAATAATAATGCTTGTAATCCCATAGGACTTTATGTCAAATAGTGCGTGCCATTTTTAACTTATGTATCT TGACCAAACTCAATTTTGTGAGAAGTAACCATATAACTGTTTCTAGATTTTTTTTAAAAATGATTACTTTTATATTCCAA AATACATGTGAGATTAACTTCACATATATCAATTATGTATTAAATAATAGTAAAATTTTATAGGTATGGTCTCAAATTTC ACATTGGGATTATATGTTTTCCTATTTTTGTGATAAATTTGAGGCTTAACTGCTCAGGAAACTTAAGGAGCCATTCGGGG
CDS sequence (LotjaGi4g1v0333700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTCTTCAGTCCAGTAACTCCCGGCCAGGTCTCGTTCTTGCTCGGAATCGTTCCAGTCATTGTAGCGTGGATTTC TTCCGAGATTTTGGAGTATCGCAAAAACTCCGTCCCCTCCAAACTTAGGCTCTCGGACATCAGCTTAGTTGAAGTGCGCA GTGATGTCGTTAAAGATGAAGACAAAGAAGTTTTATTGGAGGGAGGAGCTCAACAGCCAGCTTCCCCAAAACCTCGAGGC TTAACTGCCTCATCACCAATTTTCCGATTCCTTTTGATGGATGAATGTTTCCTTATTGAAAACCGTTTGACGCTTAGAGC AATGTCTGAATTTGGTCTCCTTTTAGCTTACTTTTATTTGTGCGACCGCACTGATTTCTTTGGCTCATCCAAGAAGAGTT ACAATAGAGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCAGCTGTGACTTCCTTTAAGATACATAATGAC AAGTCACCATTTTCTGGGAAATCCATACTTTACTTAAATCGGCATCAGACTGAAGAATGGAAAGGCTGGATGCAGGTTTT GTTTTTGATGTACCATTACTTTGCTGCATCTGAATTCTACAATGCAATTCGTTTGTTCATTGCTGCATATGTCTGGATGA CTGGATTTGGGAACTTCTCATATTATTATATTCGCAAAGATTTTAGTCTAGTAAGATTTGCTCAGATGATGTGGCGGCTT AATTTCTTGGTATTGTTCTGTTGTCTTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTT CACTCTTATGGTTTATGGGGCACTTGGAATTCTCAACAAGTACAATGAGATTGGCTCAGTCATTGCTGTAAAATTCATTG CTTGCTTCTTGGTTGTTGTCATACTATGGGAGATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACATTCATGCTC GGTTATACAGATCCTTCCAAATTGCAACTTCCCCGCTTGCATGAATGGCATTTTCGCTCAGGGCTTGATCGCTACATATG GATAATAGGAATGATTTATGCTTATTATCATCCAACTGTTGAGCGATGGATGGAGAAGTTGGAGGAAGCAGAAATCAAGC GCAGAATATCAATAAAAGCTACTGTTGTGCTGATATGCTCTGTGGTGGGTTATTTATGGTTTGAGTATATATACAAGCTC GACAAGCTCACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACGGTTTACATATGTTTGCGAAATGTTAC ACAAAGTCTTCGTAGCTATTCATTGACCCTTTTTGCATGGCTTGGGAAGGTTACACTGGAGACCTACATCTCCCAGATCC ATATCTGGTTAAGGTCAGCTGTTCCAGATGCTCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCGATGTTGAAC TTCATGCTTACTACTTCCATATATCTTGCAATTTCCTATAGGCTCTTCGACCTGACCAATACACTGAAAGTGGCATTTGT GCCCAGCAAAGATAACAAGCGTCTTACATCCAACTTTATTACAGCAACAACACTCTCAGTTGTTTTATATTCTCTGTCCT TTGTCTTCCTTAGGATACCTCAAATGTGGGTTTGA
Protein sequence (LotjaGi4g1v0333700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFFSPVTPGQVSFLLGIVPVIVAWISSEILEYRKNSVPSKLRLSDISLVEVRSDVVKDEDKEVLLEGGAQQPASPKPRG LTASSPIFRFLLMDECFLIENRLTLRAMSEFGLLLAYFYLCDRTDFFGSSKKSYNRDLFLFLYFLLIIVSAVTSFKIHND KSPFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEFYNAIRLFIAAYVWMTGFGNFSYYYIRKDFSLVRFAQMMWRL NFLVLFCCLVLNNSYMLYYICPMHTLFTLMVYGALGILNKYNEIGSVIAVKFIACFLVVVILWEIPGVFEWVWSPFTFML GYTDPSKLQLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEAEIKRRISIKATVVLICSVVGYLWFEYIYKL DKLTYNKYHPYTSWIPITVYICLRNVTQSLRSYSLTLFAWLGKVTLETYISQIHIWLRSAVPDAQPKLLLSLIPDYPMLN FMLTTSIYLAISYRLFDLTNTLKVAFVPSKDNKRLTSNFITATTLSVVLYSLSFVFLRIPQMWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 540 | 540 | 0.0 | – | |
| PANTHER | 1 | 540 | 540 | 0.0 | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 102 | 71 | - | – | |
| Phobius | 103 | 120 | 18 | - | – | |
| Pfam | 104 | 515 | 412 | 9.8E-97 | ||
| Phobius | 121 | 139 | 19 | - | – | |
| TMHMM | 138 | 155 | 18 | - | – | |
| Phobius | 140 | 159 | 20 | - | – | |
| Phobius | 160 | 179 | 20 | - | – | |
| Phobius | 180 | 196 | 17 | - | – | |
| Phobius | 197 | 201 | 5 | - | – | |
| Phobius | 202 | 224 | 23 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 225 | 235 | 11 | - | – | |
| Phobius | 236 | 257 | 22 | - | – | |
| TMHMM | 237 | 256 | 20 | - | – | |
| Phobius | 258 | 262 | 5 | - | – | |
| TMHMM | 260 | 279 | 20 | - | – | |
| Phobius | 263 | 281 | 19 | - | – | |
| Phobius | 282 | 292 | 11 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 293 | 316 | 24 | - | – | |
| Phobius | 317 | 335 | 19 | - | – | |
| Phobius | 336 | 356 | 21 | - | – | |
| TMHMM | 345 | 364 | 20 | - | – | |
| Phobius | 357 | 375 | 19 | - | – | |
| Phobius | 376 | 396 | 21 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 397 | 407 | 11 | - | – | |
| TMHMM | 408 | 427 | 20 | - | – | |
| Phobius | 408 | 426 | 19 | - | – | |
| Phobius | 427 | 437 | 11 | - | – | |
| TMHMM | 434 | 456 | 23 | - | – | |
| Phobius | 438 | 457 | 20 | - | – | |
| Phobius | 458 | 476 | 19 | - | – | |
| TMHMM | 476 | 495 | 20 | - | – | |
| Phobius | 477 | 496 | 20 | - | – | |
| Phobius | 497 | 516 | 20 | - | – | |
| TMHMM | 515 | 537 | 23 | - | – | |
| Phobius | 517 | 539 | 23 | - | – | |
| Phobius | 540 | 544 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0333700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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