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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0333900 |
Transcript ID | LotjaGi4g1v0333900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | plant/protein (Protein of unknown function, DUF538); TAIR: AT5G49600.1 plant/protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|A0A1J7G483|A0A1J7G483_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0333900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71292612..71293685) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTTGGTTGGTCCCATATATTTCAGGCATTATAAAAGCTCAATTCGGCCAAATTGAAGAAAGGCCTCAAAATTTATCC ATTGCTCTACCCTCTATGCCCATTAACCTTCTCCAATAAACACCACCACTATATATAAAGGCCAATCTATATACACAGAG CTCCTTCATAGTCATATATAGGCATCAACACTTTTTCTTGATACACATACAAAGCACAAATTAAGCTAGCTATAGCAATG ACTCTGTTAATAACAGAGGAGTTGAAGGCCAAAGCAGAGGTGTGTCATGGGGACCAAGTTTGCAGGGAGAAGTTCTCTTT GTTGCTTGCAGGAATTGGTCTCCCAGATGGATTGTTAAGCGTAGAGGACATTGAAGAATGCGGGTATGTGAAGGAAATAG GCTTTGTTTGGCTCAAGCTTGACAAGAAGAGGGAGCACCGGTTTGACAACATACTTGTTTGCTATGATTCAATTGTTACT GCATATGTGGAGCCAAACAAGATTAAGAATCTCACTGGGGTGAGAGCTAGGGATTTCTTGATCTGGTTCACCTTGACTGA GATTCATGTGAAGGGTCCTCCAGAGGGATCTGTCATCACTTTCAAGTCTCTGGTTGGATTGTCCATGTCCTTTCCTCTGT CTATCTTCCAATCAGGGAAACAGGGGAAGCAAGAAGCAGCAAAGGAAGAGAAGTGGTGGAGGATGATTAAGCATTAATTA ATTAATTAATTAGTGCAAAAAAATAGTAATTGTATATCATGAATGGATTATTGATCAGATTATGCTGATGTAAATGTAAT GGACTTTGTATATACTTCTATAATGATTTAATTCGCTTGTATTTCACACAAAGTTTAGGGTGCCTACTAATATTTGGCTT TAGGGTTTTAAATTGCAGTTGTCCATGTTATTGGAGAATTTGGGTATAAGAAGTAAATCTCAATACCCAACTTAGGTAAA TATATTATAGTAATTAGGAAACTATGCAATTAGGATTATGGCAAATAAATACGAGTTGATACAGCTGTGATTGATGATGG CACTGTGAGGACTCCAAAACTCTTGATGTTGCGG
CDS sequence (LotjaGi4g1v0333900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTGTTAATAACAGAGGAGTTGAAGGCCAAAGCAGAGGTGTGTCATGGGGACCAAGTTTGCAGGGAGAAGTTCTC TTTGTTGCTTGCAGGAATTGGTCTCCCAGATGGATTGTTAAGCGTAGAGGACATTGAAGAATGCGGGTATGTGAAGGAAA TAGGCTTTGTTTGGCTCAAGCTTGACAAGAAGAGGGAGCACCGGTTTGACAACATACTTGTTTGCTATGATTCAATTGTT ACTGCATATGTGGAGCCAAACAAGATTAAGAATCTCACTGGGGTGAGAGCTAGGGATTTCTTGATCTGGTTCACCTTGAC TGAGATTCATGTGAAGGGTCCTCCAGAGGGATCTGTCATCACTTTCAAGTCTCTGGTTGGATTGTCCATGTCCTTTCCTC TGTCTATCTTCCAATCAGGGAAACAGGGGAAGCAAGAAGCAGCAAAGGAAGAGAAGTGGTGGAGGATGATTAAGCATTAA
Protein sequence (LotjaGi4g1v0333900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLLITEELKAKAEVCHGDQVCREKFSLLLAGIGLPDGLLSVEDIEECGYVKEIGFVWLKLDKKREHRFDNILVCYDSIV TAYVEPNKIKNLTGVRARDFLIWFTLTEIHVKGPPEGSVITFKSLVGLSMSFPLSIFQSGKQGKQEAAKEEKWWRMIKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 2 | 143 | 142 | 1.7E-31 | ||
PANTHER | 3 | 150 | 148 | 5.0E-70 | – | |
PANTHER | 3 | 150 | 148 | 5.0E-70 | ||
Gene3D | 6 | 143 | 138 | 2.0E-16 | ||
Pfam | 29 | 138 | 110 | 8.2E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0333900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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