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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0337000 |
Transcript ID | LotjaGi4g1v0337000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF789 family protein; TAIR: AT4G16100.1 heat shock protein, putative (DUF789); Swiss-Prot: sp|P37919|TSAW_ORITS 56 kDa type-specific antigen; TrEMBL-Plants: tr|A0A0R0J842|A0A0R0J842_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71746417..71750225) extracted from Lotus japonicus Gifu genome v1.2.
AAACCCACCACCGTGTCAATGTCGGCCACTGGCGGAACCCGCAACCGCAATCGCCATGTCGGCGACGACCGTTTCTACAG CCCGCCACCGTTGCGGAAACACAAAGAAAAGCCCGACGACCAACACCACCACCAGCAACAACACAAGCGGTCTTCGCTCT CCAGAACTTCATCGGAGAACCGCCCTGGCTCCTCCTCCGATTGCTCGATTTCTTCTCGGGCCACATCTGACATCTCCAAT TTGGATCGATTTTTGGAGTACATCACTCCACATGTTCCCGCCCAGTACCCTGCTAAGGTTCCATCTCCAATTCACACATC ATTTCAATTTTCAATTGCGCCTTTTCATTTTGTTTATTGAATTTTGTGTTTTTCTAGTCACTGCCCACCATTTTCATGGT TGTAATTTAACTCAATTCGCAGATAAGTATAGCTACAATGGACCCTGTTAGTGAGTAAATCAATATATGTTATCTTAAAT CGGTTAATGTTCGATATTCGTAGATGAATGGCATGAAGCTTTTGTAAATTATGTGTTGCTTTAGGGTGTCCCTTCAATTG AGCTGTTGCATACTACATAGCTCAATGTATGTTACTTGACTGCTTGCTATTAAGTGTATGTTTGGATACCCGTTAGACGA GGTGAAAGGAACACTCATTCTCCGTAAACATAAAGTAGTTTTAATTTTAATTAAACTGTTAGACAAACATACATTTAAGG TTGCATGTGTTTTTGGTTTGTTTCGAAGGACATTTGGCGTATTTGGGTGTTGATAATTTTGTTTGTGAATGAACAGACAA GCTCGAGGAGATGGAAAACGAAGGAGGCGGAACTACAACCATATTTTGTACTTGGGGACTTGTGGGAGTCGTTTAAGGAG TGGAGTGCATATGGGGCAGGTGTTCCTCTGGTGTTGAACGGGAGTGAATCCGTGACACAGTATTACAATGTCTCCTTGTC TGCCATTCAGCTGTATATCGATCCATCAAAACCTTCCTCCCGGTTAAGGTGAGAGTATGTTGCCATGAAACATGGCATTT CGAAATGCACCTCTTATATGATATAGCAAATTACTTTCATTTGAATATTCTACTGCAATATTGTCTTGTTTCTTCAATTC AATGTAATACTTTTCTTTTGTTATAACTACTGGCTTAAACATACCTTTTCTCTACTTATGCATCTTATTCTGCCTGTCTT TCAAATGTGGTTCATATTACCAACTAAGAAGTAGACAGTTTTCTCATAGCCCTTTTATGCAAGGTAAAACATTAAAAGAA GGATCTCGTATGTTATTGATCATCACGTATTCACATCAATATTCTTCGTAGTAGCATGAAGCAAAGCCTTTGCTGTTTTG AACCTATGAGAGATAGATCTAGCACTCTAAAGTCTAAATTCACGTTGGTTTACACTGACTGTCGTTTCTGATTCCGTCTG CATCCTTTTAAAATTTATCCATACTAAAGAAATTTGATACTATATAACCTGCTAAATTCAATTGGCCTTGAACAAATGCT CTTTTTTCTCTTCAAACTCACAAAGAATTGGCAGATTACTCTCCCTTGACTACCCTGCCGTGTTTAACTCTTGGACTATT TATCTACGAGGTTTGATGTATTTGTAAACTGTGTGTCTATTTTTCTTGTGGGCAATGAAAGTCTTAATTTTTCTATTGGA TTACTTAATCCTAATGTTTTAGAAAATATGACTGAGTTTTTTATAATGGCCAAGGTGGGGAGTTGTTATCAATACCTTTT TGTAGTAATAATATTTTCTTTTGCTTTCAAAGAGAAGTCAAAATTAATTTCTTTAAGTACTTTTATATTTTTGGTTTATT TATTTATTTATCTTATTCACCCATAGAATGATTATGAAATGAAAATTTGCAACGTTATGTACGCAAAATACTTTATTTTA TCTAAGGGGAAAAATAGTATGAGTATCTTATGGGTTTAATTGTACTGATGTATTTTCTGTATGGTTTGATTTCAGAATAC ATCGATGAAACATTTTTGTATGTCTTTTTGTGGTTTTTGATTTTGAATTCCTTTTGGGAAAAGATTTTTGCAATGACCAG CTGTTATTGGCTTATGTGAGGGTAGATATACTGAACAAAAATGGATATCAATAATTTTGGCTTGGCTTCCAATCATGGAG CTATAAAGATGGGAGAGGAAACAAAAGACTAACTAGCTTAAGAATCACATGCTGTCCTATCCAGTATTAGATTTCAGGCA TGATTTATTAAGTAGACCATGATGTTCATATCAAATTGTCTACATTTTTGGAGGTTGATGGGTAAGTTCGTAACATATTT ACATGTCAGGGATGTATGATTTAAGAAACAGGATGAGCACAATAACAAAGTGACTACTGAAACTCACCACTTGTGTTATG CTAGATCAGTTCAAGATAGTTGTTTTACTAGTAACCTACTAAAGTGAATCTACTTATCTCTTTACTCTTAGTTTATGACA TTGTAGCTAACCTTCGGATAATTGGGTTGACTTTAGCATATTTGCTCCACTTTCCACCATACTTTGCAGCTCTATGAAAT ACTCTGTAAATAGTATTTTCACCTGTTTTTACTCTGAACTTAAAGCTATTAATCATATCCATTATGGAATATGGAAATGG GAAATCAATTCGTGGAATTTTTTACACAAAGTAAAAGTATTCTATTCTGCTGCTCATAGCCTTCGTATTGCTTACTTTCA TGTGTTGGCCTTACTTTGAAACAGCACACCTATGATATACCCCTTTTCAAGACCACTTTTCCCTTTTAGCTATATTTAAA GACTTGGCATATTATCATTCTCATTTCCATTTTATTCCAGGAAACCCAGTCAAGAAAGTGACTCTGAATCTGCTAGAGAG ACAAGCAGTGATAGCAGCAGTGGCTATTGTCATGAAAGAGGAGCAAAGAGTGTTCATGGAAGTAGAAATCATCACAACAT TTTGGAGGCAAACAATCATGCTTTAGAAAGGGTCTCACTAGGTAAACCTTTGATGGGTTCAGCAAATGATGAGACTGAGA TCAGCGACCCACCTGGACAGCTTATATTTGAATACTTTGAGCATGAGTCACCTTATGCTCGTGAGCCATTAGCCGATAAG GCAAGATGTTATCCCTTGATTGACTTTCAAGTTAGATTATGTTGCTTTCTAATCCTAACAAGTATTCATATTGCTTGACT CAGATCTCTGAACTTGCGCGTCAATTTCCAGAGTTGAAAACATACTGGAGCTGTGATCTTTCGCCTGCAAGTTGGATTTC GTTGGCTTGGTATGTTTTTCTTGTCCTCTTGGTCTTCAGATTACTGTGATTGGATAATTGACAAGTACTAATTTAAAATT ATTTGTTGCTGTGTATATTATGTAGGTACCCGATATATAGAATACCTACTGGTCCAACCCTACAGAGCTTGAATGCCTGC TTCCTGACCTTCCATTCTCTGTCAACAGCTTTACAAAGTATGTCCTTTTGTCTTTGTTTAGTTTGCGTATTTGCAAAATA CTTGTAAACGGGCATCAACTATAACAGTTTGATCTTTGAATCAGGTTCAAATACTGATGGGCTTCATATTCATTATTCAA GAGGTCGGGAAAGATCATCAAAGATATCATTACCAATCTTTGGGCTTGCCCATAACAAGTTTAAAATTTCTGTATGGGAT CCTGAGGGAGTTCCTGAATGTCAGAAAGCCAATTCTCTGTCACGAGCTGCTGAGAACTGGCTTAGGCTACTGCGAGTTAA TCATCCTGATTACAATTTTTTCATGACCCATTATACATATTTGAGATGA
CDS sequence (LotjaGi4g1v0337000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGCCACTGGCGGAACCCGCAACCGCAATCGCCATGTCGGCGACGACCGTTTCTACAGCCCGCCACCGTTGCGGAA ACACAAAGAAAAGCCCGACGACCAACACCACCACCAGCAACAACACAAGCGGTCTTCGCTCTCCAGAACTTCATCGGAGA ACCGCCCTGGCTCCTCCTCCGATTGCTCGATTTCTTCTCGGGCCACATCTGACATCTCCAATTTGGATCGATTTTTGGAG TACATCACTCCACATGTTCCCGCCCAGTACCCTGCTAAGACAAGCTCGAGGAGATGGAAAACGAAGGAGGCGGAACTACA ACCATATTTTGTACTTGGGGACTTGTGGGAGTCGTTTAAGGAGTGGAGTGCATATGGGGCAGGTGTTCCTCTGGTGTTGA ACGGGAGTGAATCCGTGACACAGTATTACAATGTCTCCTTGTCTGCCATTCAGCTGTATATCGATCCATCAAAACCTTCC TCCCGGTTAAGGAAACCCAGTCAAGAAAGTGACTCTGAATCTGCTAGAGAGACAAGCAGTGATAGCAGCAGTGGCTATTG TCATGAAAGAGGAGCAAAGAGTGTTCATGGAAGTAGAAATCATCACAACATTTTGGAGGCAAACAATCATGCTTTAGAAA GGGTCTCACTAGGTAAACCTTTGATGGGTTCAGCAAATGATGAGACTGAGATCAGCGACCCACCTGGACAGCTTATATTT GAATACTTTGAGCATGAGTCACCTTATGCTCGTGAGCCATTAGCCGATAAGATCTCTGAACTTGCGCGTCAATTTCCAGA GTTGAAAACATACTGGAGCTGTGATCTTTCGCCTGCAAGTTGGATTTCGTTGGCTTGGTACCCGATATATAGAATACCTA CTGGTCCAACCCTACAGAGCTTGAATGCCTGCTTCCTGACCTTCCATTCTCTGTCAACAGCTTTACAAAGTCGGGAAAGA TCATCAAAGATATCATTACCAATCTTTGGGCTTGCCCATAACAAGTTTAAAATTTCTGTATGGGATCCTGAGGGAGTTCC TGAATGTCAGAAAGCCAATTCTCTGTCACGAGCTGCTGAGAACTGGCTTAGGCTACTGCGAGTTAATCATCCTGATTACA ATTTTTTCATGACCCATTATACATATTTGAGATGA
Protein sequence (LotjaGi4g1v0337000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSATGGTRNRNRHVGDDRFYSPPPLRKHKEKPDDQHHHQQQHKRSSLSRTSSENRPGSSSDCSISSRATSDISNLDRFLE YITPHVPAQYPAKTSSRRWKTKEAELQPYFVLGDLWESFKEWSAYGAGVPLVLNGSESVTQYYNVSLSAIQLYIDPSKPS SRLRKPSQESDSESARETSSDSSSGYCHERGAKSVHGSRNHHNILEANNHALERVSLGKPLMGSANDETEISDPPGQLIF EYFEHESPYAREPLADKISELARQFPELKTYWSCDLSPASWISLAWYPIYRIPTGPTLQSLNACFLTFHSLSTALQSRER SSKISLPIFGLAHNKFKISVWDPEGVPECQKANSLSRAAENWLRLLRVNHPDYNFFMTHYTYLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 66 | 66 | - | – | |
PANTHER | 9 | 378 | 370 | 9.5E-130 | – | |
PANTHER | 9 | 378 | 370 | 9.5E-130 | – | |
MobiDBLite | 10 | 41 | 32 | - | – | |
MobiDBLite | 45 | 66 | 22 | - | – | |
Pfam | 73 | 376 | 304 | 3.7E-99 | ||
MobiDBLite | 158 | 199 | 42 | - | – | |
MobiDBLite | 162 | 176 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0337000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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