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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0339000 |
| Transcript ID | LotjaGi4g1v0339000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence-associated family protein, putative (DUF581); TAIR: AT5G49120.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I1MRK2|I1MRK2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0339000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71906564..71908564) extracted from Lotus japonicus Gifu genome v1.2.
AATCCTTCTTTAATTTGTGACTGCTCCTCCATAGCTGTACGGGTCCCACTTTTTCTCTCTTCGTACTACTGCTACCTATT CTTCCCTTTCTTCCTTCTTCATTTCCTATTTATGTTATAACTTTTCTCATTCACCACTACCAACTTATAGAGTGAACAAT TAACATTCAAGAAATTAAACCAGAGAATGAAACATGGTTGGTCTCAGTGTAGTTCTGGAACCCCACAATAACCACAACCA CAAAGGTACCACTAGCACTAGCACTAGCAAAACCACCAACATGTTTGGAAGCAGCATCAACAAACCTTCACCTTCACCTT CACCTTCCCCTGTTTCTCCTCCTTCTTCTACAGTTTTCTTTGCTTCTTCCACAACAACAACCCACCATACTACTCTGTTT CAGCCACCAACTTTTCTAGACCAATGCTTTCTCTGCAGGAACAAGCTTTTACCTGGGAAAGACATCTACATGTACAAGTG AGTACTCTTTTAATTTTCACTTGTGTTTTTTTTTTCTGTCTGAAACCCCAGATCTTATAATGCAGCATTGTTCCGCTGTT TATTGATTTCTTTCTCCTCACAATAAAAAAAAATACCCAGATTTTTTATTGTTGTTATTTTATGTTTATTTATCCTTTGC ATAAAAAAAGACTTAAACTTGATGAACTGTGTTTTTGACTTTATTTTTTGTGTTAATGTATCTTATAATGTATTGTACCA TTTTTATTGATCCTGACGAAAAAAAATGCCCAGATCTTTTATTGTTGTTTGTTTATGTTAATTGATCTTTTGCCTAAAAT AAGAGTTAATTAAACTTGATCTTCTGTTATTGTTTTGATTTTTTTTTCTCTGTTTTTATTTATTTATTTTGGCGTGTTGC TGGAAATGTATATATTTTTGCAGAGGGGATAGAGCGTTCTGCAGCGTGGATTGCAGGTGCGAGCATATTTTAACGGATGA GGAAGAGAGTGTTCAGAAAGAGAAAGGTCGTCATCAGCGGAAAGGAAAAAATAACTAAGCATTGATGATGAACGATCGAG ATGTGTTACAAGAGAAGAAGAGAAAGTGAGAGACACAAGAAATTAAATCAAAATGAGAGAGGCTTTTTTGTTTTTGTTCT AATTCCCAGTTTTACCCATGCTTTTGTTTTTTGTAATGACATCACAGCCCTTGCTCTTTTGCTTCCTAGTATGAAGCCAA ATTGTCCTTTCAACTTTCCTTATTTTTATCTTCTCTACTGGGTCCAAGTTATTATGTAACTGTGAATGAAGCCACTCTCT CTATGGTGGTGGTTCTTGCAGTGTAGTGTAGTGCAGTGCTTTTTCCCTTAGAGAAATACTTGCCGTTTTGTTTTTTAGTT GTTTGACAGTTTGTGTTTTGAGGGTATTTATGGTATCTTTGTCCTTATGGTTAATGTTTAGGGTTTCATTAGAGATTGTG ACTGTGGGATATGATGATGGTTTATCGTTAATTTACTCAAATGCTCAAATATGTTCATATGTACTATTACCCTTGATTGC ATTCATCTTGGGGCTCGTGGCAAGGAATAGCAGTGTTTGTTTTTAACCAAAAGGACAATGCACAATCCTGATGAACTTTT CTTATGTGATAGTACATTTTGGGATTTTTGTGGAGGGGTAAATTAAGATTATTACAGTTGGCTAGCTATTGCATGTTTGA TATTTTTACCTCTCAATTGCTGAATGAATCATCCATGGAGATATGTCTCAATTTTTTTAGGTTATCTTTGATTGGTGTCA ATTATGTTATGAAATTAGACTGATATATGTGGAATTAGTTTTCTAATATGTGCATGTTGATTGATTAATTGTTCTACTTC TATAAATTAAGTCCAAGTGGCAATGTAGAACTAACTCTGGATTATATATGTTATTTGCTGGCTTCATTGCCTAATCCTGA ATGGCTAGTTGGCAGTGCCATGGATCTTAATTTGTCCATTAGCTTGATAAGGCATAAGGTACTAACAAGTGCCAATAGAA A
CDS sequence (LotjaGi4g1v0339000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTCTCAGTGTAGTTCTGGAACCCCACAATAACCACAACCACAAAGGTACCACTAGCACTAGCACTAGCAAAAC CACCAACATGTTTGGAAGCAGCATCAACAAACCTTCACCTTCACCTTCACCTTCCCCTGTTTCTCCTCCTTCTTCTACAG TTTTCTTTGCTTCTTCCACAACAACAACCCACCATACTACTCTGTTTCAGCCACCAACTTTTCTAGACCAATGCTTTCTC TGCAGGAACAAGCTTTTACCTGGGAAAGACATCTACATGTACAAAGGGGATAGAGCGTTCTGCAGCGTGGATTGCAGGTG CGAGCATATTTTAACGGATGAGGAAGAGAGTGTTCAGAAAGAGAAAGGTCGTCATCAGCGGAAAGGAAAAAATAACTAA
Protein sequence (LotjaGi4g1v0339000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGLSVVLEPHNNHNHKGTTSTSTSKTTNMFGSSINKPSPSPSPSPVSPPSSTVFFASSTTTTHHTTLFQPPTFLDQCFL CRNKLLPGKDIYMYKGDRAFCSVDCRCEHILTDEEESVQKEKGRHQRKGKNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 123 | 123 | 1.1E-36 | – | |
| PANTHER | 1 | 123 | 123 | 1.1E-36 | – | |
| MobiDBLite | 8 | 56 | 49 | - | – | |
| MobiDBLite | 12 | 38 | 27 | - | – | |
| Pfam | 69 | 115 | 47 | 9.9E-23 | ||
| ProSiteProfiles | 73 | 117 | 45 | 22.817 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0339000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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