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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0339800 |
| Transcript ID | LotjaGi4g1v0339800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxidoreductase/ transition metal ion binding protein; TAIR: AT3G06890.1 transmembrane protein; TrEMBL-Plants: tr|I3SZN4|I3SZN4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0339800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71963578..71964914) extracted from Lotus japonicus Gifu genome v1.2.
ATTTACTTACACACATACGCGTCCCAAAGCTTAATTTAAACTCAGAAAAAGACAATATAGCACACGCAACACACACCCCA CCCACTCATACATAGACAACACTTGCTCAGTCTCACCTATCTATCCTACAAAAATAAATGATGCAACAGGCTCAGGGTGG TGGTGCTCCACCGCATGCTATCCTTCTGGCAGTGGTGGTAGCGATCGTGGTCATCGTGCCTTTCCTTCTCGGAGATCAGG GAGAAGCCATCACCGAAGGGATAGCGGAGCTGCTAAGTCCACTAGGTCTTCTTCTGCTCCCCATCATTCTCCTCCTCACC ATCCAGTTCCTCTCTTCCGATCGCGGCTCCTTCGTCTCTTCACTTTTCTCCACCGGCGAACCAGACTCCATCCACCGAGT CAGCGGCTCCCCCGTCGGCGTGGCACTCGTCCTCATCCTCATTCTGTTCCTCCTCTACAACCGCTTCTCCATCTTCGGCG GTGATGATTCCGATGAATGAATGAGTTTCTGGATCTGGCTCTCTCATGCTTTTTGTTTTGTACTATTTCAGATTATAATT GTAATATTGTGGTATTATTAACTAATTACAGTGAGAGAATAGATGAACTTAATTGCTTTTTTTTTTCCCCTCTTCAGATT TGATATGCAGTAAATAAATGAGTAATTAATGATATGATGCAACGTACAGTTATTTTGATTTGTGTAGCAAAGATGAGAGC ATCTTGAAAACTCTCATTCATTGATTTGTTTGTGAGGAAGGAAAAGGAAATTCAAATGCTAGCTAGAAAGAAACAATTGG TTGGTGGAGGAGCGTAGTAGCTTTCACTTTTTTTTTACTTTACTTTTGCTTGTGTTGAGTTGAGGACATTTTACCAGCGC TGACCCTCACTTGCTCCTGCTTCGGAATGTGTATGCTGACGCGTGTAAGCACGCCATTGGTCTCTTTTGTTTATTATTTT TTAAGTTGTTCAATTCTTTTGCTTAGTGTTGTTCTCATCGGCTCCAAAAGTCGTATGATCCAACAGCGGGCGGCACGGTT AGCTCACTCGTTATGCTCTTAAGCAGACATTGTGCAGTGAGTTAGCATGATTTGATCCAGGAATGGAACACCCTGGCGCT ACTTGAAAGTGTTCGATTAACTCGACAAAGAGCTAGGACATATATATACTATACATGACAACATCAAGATAGTCGTGCGC TTGAAAGTTAAGACATTCCAGCATACTTGTAGAGACTCTAAACATATTTGTATGACCTACTAATACAAGTTCTATCTTTA ATTTACATAACATGTCATTCATTCTTGATATTTTTGAGTTATTCTTAGACTCGTGTA
CDS sequence (LotjaGi4g1v0339800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAACAGGCTCAGGGTGGTGGTGCTCCACCGCATGCTATCCTTCTGGCAGTGGTGGTAGCGATCGTGGTCATCGT GCCTTTCCTTCTCGGAGATCAGGGAGAAGCCATCACCGAAGGGATAGCGGAGCTGCTAAGTCCACTAGGTCTTCTTCTGC TCCCCATCATTCTCCTCCTCACCATCCAGTTCCTCTCTTCCGATCGCGGCTCCTTCGTCTCTTCACTTTTCTCCACCGGC GAACCAGACTCCATCCACCGAGTCAGCGGCTCCCCCGTCGGCGTGGCACTCGTCCTCATCCTCATTCTGTTCCTCCTCTA CAACCGCTTCTCCATCTTCGGCGGTGATGATTCCGATGAATGA
Protein sequence (LotjaGi4g1v0339800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQQAQGGGAPPHAILLAVVVAIVVIVPFLLGDQGEAITEGIAELLSPLGLLLLPIILLLTIQFLSSDRGSFVSSLFSTG EPDSIHRVSGSPVGVALVLILILFLLYNRFSIFGGDDSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 8 | 117 | 110 | 3.1E-51 | – | |
| PANTHER | 8 | 117 | 110 | 3.1E-51 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 45 | 65 | 21 | - | – | |
| Phobius | 66 | 84 | 19 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 85 | 107 | 23 | - | – | |
| Phobius | 108 | 120 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0339800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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