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LotjaGi4g1v0342000.1

Overview

Field Value
Gene ID LotjaGi4g1v0342000
Transcript ID LotjaGi4g1v0342000.1
Lotus japonicus genome version Gifu v1.2
Description Heavy metal transport/detoxification superfamily protein; TAIR: AT5G27690.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q84J88|HIP36_ARATH Heavy metal-associated isoprenylated plant protein 36; TrEMBL-Plants: tr|G7JLG8|G7JLG8_MEDTR Heavy-metal-associated domain protein; Found in the gene: LotjaGi4g1v0342000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72165683..72169215) extracted from Lotus japonicus Gifu genome v1.2.

ACTCAACCTCCTTGTAAAAAGTGAGTCAATGTTGCCGGGAGATTAGCTTAGCTGAGGAACAACAACCCCCATTCACCCAT GTCCGACGGCAGAAGAAAGCAGCAACAGTGTGTTTCTTCAGTCACTGTCACATAACACTTTCTTAGCCATACCATACCTC AAGGTACATTCTTCCCTTTTTCTACTTCTCTTTCTTTTTCAATTTTTCTTAAAACCCCATTCTCATTTCCTTTTTTCCTC TGTTTTCAAGTTTCCATTTGCTTCTCACACTTCCCCCCTCTCAAATGGATGCAAAGTCTGCTCAAGTTACCTCTCAAACA TTGAAGTATCAGGTAACTGTTTCCCTCAACCTCAACTTCAAGTCCTCAACCCAAAAAACACACCCTAGCGTTAACATAGT GAACTTTTTGCTTTTCTCCCTTGTAATTTTTTGTCTTTTTTTTAATCTACTAAAATTATTTTTCTTCTATGTTTCTCAGA CATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGTAGAAGGAAAGTAAAGAAAGTTCTACAGAGCATTGATGGTACT AAGCCTTAACAGAAAATTTTCTTCCCTTTCTCTCTGCTCTGCTCTTTGTTTACTAGAACAGGAAACTCGCTTCAAATTAC AACTATTCAACTTACCCTTTTTCTACAGGGTTTTCATTTTTCATCTCATGCATGAACAGATTACAAAGCTCAATATTTTT ACTGTGCTAACTCAAAATCAGTGTCATTTTCCTTCACCTTTTTTACCATATTCTTGTGTTGGTGCTCTGCTTTCTCTGTT CTATTTTTGGGTTCTTATGGTGACACAGAAATTTGGGGTATTTTACTACATTTGCAGGAGTTTTCACTACAACAATCGAC CCTCAACAGCAGAAAGTAACTGTCACAGGAAGTGTTGGTGTTGAGATTCTGATAAGGAAACTGGTCAAAGCTGGAAAACA TGCCGAGGTTTGGCCGGAGAATCTCTCCGGTAAGGGAAATGCAAATGCCTCCAACAAGGCGAAGAAGAAGAGTGAACAGA GAAACCCTGAAACTGTGGAAAACCATTCTGGTGCAAATGTGGAATCTAAGCCCAGTTCTGGCAAAAACAGGGGAGTTGAA AGTGCTGTAAAGTGCAGAAACAAGGGAATTGACAGTGCTGAAAAGAGCAAAAACAGGGGAATTGAAAGCAAGAGTAGCAA CTCAAAATCCGGCACCACCGCGCAGGGAAAGTCACCGGCGCCGGAACAGGACAGGAAAGATGGTCAAAGTGAAGGAGGGA CCGGAAAAAGTGGTGGTCCTGGTGGAGGGGGTTCTGGTAAGAAGAAAAAGAAAGCTCAGAGTGGTGGGGGTGGTGGTGGA AGCAACAATGGGTTGAGTGCACCATCCACCACCCCTGCCCCTGTTCCTGCACCTGCACACACTGGATTCCAGTTCCAGAA TGATCCTGGCCAGGTTGTGGGCCATTTGAATCTGAGCCCTACACGTCATCAATATCCAGAAACTTGTTATTACCCTCCCA TGGTCTATTTTGCAAGTTACAACAACAGGCTATGTCCCATGGGAACAATGGGTGGTCCTTCTTATTATGTTCCCCCATAC CCCTACATAGGTGCAGGCATGGATCATCATCATGATCTTTATCAGATGCAATCACCATCGTTGGTTCCCTTCGAGATCTT CAGTGATGAAAATGCTAATGGCTGTTCTGTTATGTGATGAGGAACTTATAACTCAAAGTCAGTAGAGTGTAGTACTTTTA ACAGGTTTTGTTTCTCTGATATGGCCCCGGGTAGTAGTAGTTTTGTTATGATAATTTTGTAGTGACCAAGGGAACATGAG CTTATGGTGTATATGTTGTCTTTTGTTCTAGTTTCTGCGTAGGGGCTGATTTTGCTTTTAGAACACCTTGAATCTCCAGC TCTAGTTTATTTTGATTTTGGAACAAACTGTATACTATGATGTTCTCATATATGGTGTGCCTTTAATACTCATGTGTTAT GTATTTATAGCATGTCTAGATCAAACTTATTTCTTATTTTTTTTCGGAATCAATTTTGACCCCTAAAAATTGCATGTTTA GATATATGGTAGGAGTAGAAAAGCAGAGTGAAACTAAAATTATAGCGGATAGATAAACTTTTCTTAATTTCTGGAGTATT GTTTGTGATTTTGGCCTTCCTTGCCTGGATTTTGTACCAAATATACAAAGATATGCGGACTGACAATAGAAAAAGTGAGA GCATTTGTAATCATGATTGTTATGGCCTTATCCTGTGGAACTTTGACTGATATCTAATCAAAATCTGTCATTTGCAAATG GATCAAGGTCAAGATACTTGCATGATATCAAGATACCATCTCAAGGGCACTTTATGAGGACTGAAGAGAGTACTGAGGCT GTTCCATCAAAGTAGAAGAAGCAACAGAGTGAAGCAAGATGGATGTGATATATGAGGTTTCACCTACGGTGGGACAGTTT TGAAACTGGACCACCGTGGGCCAATGTGTTAAATTTAATCTGAACTATAGATATATTACTTTAAAATTGAATGGTTGTGA TTAAAAGATGTTGAATTACTCAACTATCCCTAAGTCTTTCCCTTCTTTCTGCATAGTCCAAAAACACAGCAACCTCCACC CCCGCCAGCAACCATGTGTGCCACCATGGACTCGCCGGAGAAGCCACCCCGTCAGAAACCACCCCACAAAAAACCATATT TAAAAACATAGCTGCCTCCACCCAAAACCAACTCCACTAGAGACCACCCCCACAGAAAACCAGATAAAAACTAGATCCAC AATTGCAGCAACTTGCAAATCGACCATTCATCGAGAGAGATGTGGTGGGGCGGTGCTGGATCTGCTCGGATCTGGTGGTT TTCACACGCTCGTCGCATCCGGCATGAAGGAGAGCACCTTCTTTTCTCGATCCAAGGCCGATGTCGCTCTTCCTCCCTCT CCGAAGCGCAGCGCCGCCACTGCCATTGTTAAGCTCGCAGCGCCACCGTCGCTCATCCCCTTTCTTTTCTTGAAGGATGC CGCTGTTGATGAAGACTTGTTTTTTTCTGGCGGTGAACCAGTCGTTGGGGACGGAGGAAGGTTCCTTATTGGCGGCGCCG GGGACCACCACGTTGTGGAGGAGGAAGGAGTCGCCGGAGTGAGGGAGGGTGAATCCCGGTGGGAGGTAAAAGTTGATGAT GGAGGGAGGGAGGGAGAAAGATGGAAAAAACTTAAAAATTGAGGATAATTTAGTCTTATCAATAAAAAATGAAATTGTCC CACCGTGGGACAGTTTGGAATATAACTCACCGTAAGCGCAGCCGATATATGAAGGTTGACATTCGCTTATTCTTCGTGAT TTAGGAACTAGTCCATTAAGCATCTGAATTGGAGTAAAAGAAAAACAAAAAAGTGTGCTTTGAAGAAAAAATGGGTGTGA CATAAAATATTTGATAAGTTGATTCAGCTGAAAATTGATTTCAAGTTGTGTAACTTGAAGGAAGAATCTTAACTCGTTTC ATTATGCTGTCTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0342000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCAAAGTCTGCTCAAGTTACCTCTCAAACATTGAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGA AGGTTGTAGAAGGAAAGTAAAGAAAGTTCTACAGAGCATTGATGGAGTTTTCACTACAACAATCGACCCTCAACAGCAGA AAGTAACTGTCACAGGAAGTGTTGGTGTTGAGATTCTGATAAGGAAACTGGTCAAAGCTGGAAAACATGCCGAGGTTTGG CCGGAGAATCTCTCCGGTAAGGGAAATGCAAATGCCTCCAACAAGGCGAAGAAGAAGAGTGAACAGAGAAACCCTGAAAC TGTGGAAAACCATTCTGGTGCAAATGTGGAATCTAAGCCCAGTTCTGGCAAAAACAGGGGAGTTGAAAGTGCTGTAAAGT GCAGAAACAAGGGAATTGACAGTGCTGAAAAGAGCAAAAACAGGGGAATTGAAAGCAAGAGTAGCAACTCAAAATCCGGC ACCACCGCGCAGGGAAAGTCACCGGCGCCGGAACAGGACAGGAAAGATGGTCAAAGTGAAGGAGGGACCGGAAAAAGTGG TGGTCCTGGTGGAGGGGGTTCTGGTAAGAAGAAAAAGAAAGCTCAGAGTGGTGGGGGTGGTGGTGGAAGCAACAATGGGT TGAGTGCACCATCCACCACCCCTGCCCCTGTTCCTGCACCTGCACACACTGGATTCCAGTTCCAGAATGATCCTGGCCAG GTTGTGGGCCATTTGAATCTGAGCCCTACACGTCATCAATATCCAGAAACTTGTTATTACCCTCCCATGGTCTATTTTGC AAGTTACAACAACAGGCTATGTCCCATGGGAACAATGGGTGGTCCTTCTTATTATGTTCCCCCATACCCCTACATAGGTG CAGGCATGGATCATCATCATGATCTTTATCAGATGCAATCACCATCGTTGGTTCCCTTCGAGATCTTCAGTGATGAAAAT GCTAATGGCTGTTCTGTTATGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0342000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAKSAQVTSQTLKYQTWFLKVSIHCEGCRRKVKKVLQSIDGVFTTTIDPQQQKVTVTGSVGVEILIRKLVKAGKHAEVW PENLSGKGNANASNKAKKKSEQRNPETVENHSGANVESKPSSGKNRGVESAVKCRNKGIDSAEKSKNRGIESKSSNSKSG TTAQGKSPAPEQDRKDGQSEGGTGKSGGPGGGGSGKKKKKAQSGGGGGGSNNGLSAPSTTPAPVPAPAHTGFQFQNDPGQ VVGHLNLSPTRHQYPETCYYPPMVYFASYNNRLCPMGTMGGPSYYVPPYPYIGAGMDHHHDLYQMQSPSLVPFEIFSDEN ANGCSVM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45868
2 327 326 9.6E-89 –
PANTHER
PTHR45868:SF29
2 327 326 9.6E-89 –
Gene3D
G3DSA:3.30.70.100
14 79 66 1.1E-17 –
SUPERFAMILY
SSF55008
15 81 67 2.88E-15
IPR036163
CDD
cd00371
20 78 59 1.63673E-11
IPR006121
Pfam
PF00403
22 75 54 1.0E-11
IPR006121
ProSiteProfiles
PS50846
23 79 57 10.179
IPR006121
MobiDBLite
mobidb-lite
81 237 157 - –
MobiDBLite
mobidb-lite
107 125 19 - –
MobiDBLite
mobidb-lite
130 151 22 - –
MobiDBLite
mobidb-lite
152 168 17 - –
MobiDBLite
mobidb-lite
205 219 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0342000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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