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LotjaGi4g1v0342500.3

Overview

Field Value
Gene ID LotjaGi4g1v0342500
Transcript ID LotjaGi4g1v0342500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial carrier protein-like; TAIR: AT5G48970.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q9DAM5|TPC_MOUSE Mitochondrial thiamine pyrophosphate carrier; TrEMBL-Plants: tr|V7CAG6|V7CAG6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0342500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72227876..72230769) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGAGCCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTCAGCTGGAGCAATTTCTGGTGGAATATCTCGAACTGT AACATCTCCCCTTGATGTTATTAAGATTAGATTCCAGGTTTGTTTTTTTGGAATGTTTTGTTATGCATCATTGTATTGTT CTTTGTTGTCTTTTGGTGTTTGTTATTCACACTCACAATGACAGGTTCAACTGGAGCCAACTTCTTCATGGGCTTTGCTA AGGAGGAATTTGGCTGCAACTGCTCCATCCAAATATACTGGCATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGG TGTACAGGTACAACAATAACCCTCCTGTATGATTCTGTAGTAGGAAGTTAATCCTGGTTCTGCATTGAATTGTGTGCCCA TTGCCAATCCAAACACACTATAAGTCTATCTTGGTGCTTTTTTTGAAGTTTTCTGCCCTTTATTTCTGTCCAATTTGTTT TTTCAGGGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATGGTTATGCCATATACAGCTATACAGTTTACAGTTTTACA TAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGGTATGATATTTTGTTGTTCAATGTACCAATATATCGGCTTCA TTAGTATTGTATTGAGACTCAAATTATGTTTTGTTGCATCGTCAGCAGTTGTTGCAAGTTTTGACTTCTGTCAGTTAGGT CCATAAGATAAGCTCTTTAAATTCATTTTGATATCTTGCATAGGACTTTTTTGGAAGAGGATCCTCTCTGTAGTTATTAG GTTTATGATCTATGCATGCAATTCAAAACTTATGCCTCTGCACACTGGAATAATAATTGCATGCCTGGAAATTACCTATA TCTTCTCCAATTCTAGATTTATGTGGTTCATTGGCGGCTTTTTATTTCTGCAGAGAATCACATTGGTTTGAGCCCTTATC TATCCTATGTCAGTGGGGCATTAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCCTTTGATCTTCTCAGAACCATATTA GCTTCTCAGGGTGAGCCAAAGGTATTAACTATGATTTAATTTAAGACAGTTTCCAAGTTAGTATGTTAATGTTTATTCTG AAGGCCAGTGAAGCATTTTACTTGTCTGCTTTTTATACACCATCCTCCTGTTCATAGACTTCTTCTGTGGTTTTCCTTTC CATCATGAACCTACATCTCAATCTATTGCTTGAAAGGTTTAGGTGGATAGAATTATTTTCATTCATTCTCTTCGTCTGTT TTATTTTTTGTTGTTTTTTTGGGCGGGGGATGCTTCTCTTTGATCCCTTGTGTAGAGAATTATACACTATAGTTTGTCAT ATCAGATCATATCATGTAGGAGTTCTGTTAGCTTCAAAGCTATATCAAACCTGTAAAGTGCACGTTTCCCACTTTAAATG CCTAGAGTGGTGCCAATCTTTGTCCTTCTAGTTAAGATGTGCTATATGCTCCTGTTTGGCTTGTGTGAAAATGCTGATCC CTGATGTTGTTTTGGTCCTCTTGGAGCTTTTCCCCCTTTTCTAGTAACAAGGATTTTCTATATTTTCCAAACATTTAGGT GTATCCAAACATGAGGTCAGCATTTGTGGATATCATCCAGACTCGAGGATTTCAAGGCATGTATGCTGGATTATCGCCAA CTCTAGTTGAAATTATACCTTATGCTGGCCTACAATTCGGCACCTATGATACATTCAAGCGTTGGGCCATGGTAAAATCT CAGTCATTCTATTTAACATCTCAATTTTATTAGTTGACATAATTATGCCCTGCATGAATTGGGTGTTGTGCTTTGTTTGT GGTGCAACTCGAGTAAGCTGAAATTGTGTATTGTTCTAGATTCTGCATGATTGGTTTATTCTACTTGTTTTGCTTTGTAT TATGCCACCATTTTAAATCTTGGTGGAAAATTATAAAGTTATTCATATCTCTTAAGTGTATAATGCCTTCTAGTATAATT TTGAGGATTGCTCTAAAAGTTTCTTATTTTAGATTCTAACATGGATTATGTTGGCTTTTCATGGTAATCACTGCAATTGC ACAAGCTATCTGGACGAACAATACATCTATACAGCAGTTTTTTTTTTTCTTTTTTTCAAAAGGAGAATATATATAATAAT AATGAGGAAACCGACAAGATATAATTTGAGAATTAAAGCATGTTCATGCTTCGTACCTAATTGTTAGGTTTGTATTGTAG CACAGGAGTAAAGGAACCTTGAAATTTATTTCATCATCACTATAAATTTGTTTCCACATGTATGTTGTATTGTTGTAGCA TTTACATGACAGATGGGGCTGGATTACATCATACAGCGGATTAGTTTTTTGTTTCGATTTCACTTTACAGTTCTTTGAAA CTTTGTTTTTTTTTTTGAATTGTCTGTGTGAAATTGCAGGCTTGGAACCATTATAGGTATTCCAACACCTCTGCAGAAAA TAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATG TTGTCAAGAAAAGATTTCAGGTAAACATTTTCTGCTTATTTTTGTATTGGGACAATGGGTTTTTCTATCTCATGACAAGG TAATTATGGATGTTCATTCTTTGTTTGCTACACAGATCGAAGGGCTTCAAAGGCATCCTAGATACGGTGCTCGAGTTGAG CGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAAGGTTGGGCTGGTCTGTACAAAGGGAT AATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATATGAATTGACATCAGATTGGCTAGAGT CCCTTGTGACCTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0342500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGCCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTCAGCTGGAGCAATTTCTGGTGGAATATCTCGAACTGT AACATCTCCCCTTGATGTTATTAAGATTAGATTCCAGGTTCAACTGGAGCCAACTTCTTCATGGGCTTTGCTAAGGAGGA ATTTGGCTGCAACTGCTCCATCCAAATATACTGGCATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGGTGTACAG GGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATGGTTATGCCATATACAGCTATACAGTTTACAGTTTTACATAAGTT GAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACATTGGTTTGAGCCCTTATCTATCCTATGTCAGTGGGGCAT TAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCCTTTGATCTTCTCAGAACCATATTAGCTTCTCAGGGTGAGCCAAAG GCTTGGAACCATTATAGGTATTCCAACACCTCTGCAGAAAATAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGC GGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTTGTCAAGAAAAGATTTCAGATCGAAGGGCTTCAAAGGC ATCCTAGATACGGTGCTCGAGTTGAGCGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAA GGTTGGGCTGGTCTGTACAAAGGGATAATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATA TGAATTGACATCAGATTGGCTAGAGTCCCTTGTGACCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0342500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEPSQLKRAMIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRRNLAATAPSKYTGMFQASKDILREEGVQ GFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHIGLSPYLSYVSGALAGCAATLGSYPFDLLRTILASQGEPK AWNHYRYSNTSAENSPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYSSMFDAIQRILRLE GWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESLVT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24089:SF699
1 158 158 5.0E-159 –
PANTHER
PTHR24089
1 158 158 5.0E-159 –
Gene3D
G3DSA:1.50.40.10
4 173 170 7.5E-40
IPR023395
ProSiteProfiles
PS50920
8 110 103 27.855
IPR018108
SUPERFAMILY
SSF103506
9 269 261 1.57E-60
IPR023395
PRINTS
PR00926
13 26 14 2.1E-10
IPR002067
Pfam
PF00153
14 111 98 5.8E-21
IPR018108
PRINTS
PR00926
26 40 15 2.1E-10
IPR002067
PRINTS
PR00926
85 105 21 2.1E-10
IPR002067
PRINTS
PR00926
138 156 19 2.1E-10
IPR002067
PANTHER
PTHR24089
160 276 117 5.0E-159 –
PANTHER
PTHR24089:SF699
160 276 117 5.0E-159 –
ProSiteProfiles
PS50920
176 273 98 24.208
IPR018108
Pfam
PF00153
177 274 98 2.3E-22
IPR018108

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005347
Molecular function ATP transmembrane transporter activity Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0342500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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