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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342600 |
| Transcript ID | LotjaGi4g1v0342600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SZ41|I3SZ41_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0342600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72232491..72235065) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAAGTTTCTAAAAATAGTTAGTTAGCTAAAGACAAAATAACCCCTCACAGGTCTCGCATCGCTTAAATCAAAGGGC AAAGGAGGATCACGGTTCTACCGGTGGTTCAAAGCTTCCTCGTCGGAGCCTCAATTCCATCTTCTTCTACCAAGGTTCGT ATCGTATCTCTCCCATTTCTCACTTTCCTCTGCAACCTTCAATTCAATGAATTCATGGTTATCTCACTCCCAAATTATCT TTACCAATCGCATGTTGTTTTGCTAGGGTTTGCGTAAAGCTATCGGGTCAGTCATGGCAGATTCCTATATAATACATGTG CATATTGTAGATTGAATTGTTAATTACAGGTATGAACTGAAATCCTTGTCACCCTTTTCAGTACAAAATGTATATAAATA GGAGTCCTATAAGTTTGTAACTTTGTATTAACAATTTGATATGTAAAATATATGTGTACATCATTTGTGACCTTTGCAAC TTCAACTAATAGTTGATGAAGCAAGTAAAGGGGATTAACAATTTTACTTCTACAGTTTTTCACTCTTAGCTTGATAGATA GCCTACTCAACACATCTTAAGGATTTTTGATAATTGAAGAACCCCATAAACTAGAAATCAAAACCATATACACTAACTAT TTTTCATGTGGAATCGGAACCTGAAATGACAAATAGATTGAAGCTACACATTAGAAAAACTAGAAGAATGATTAAAGAGA TAGAGAGAACTTGTAAAAGAGAAGTAAGAAAATCACTTTATAGTGGACATACTCTAATCACTTTGGAGAAGAGATCTTGA TGTATCTCTCATTGCAAAAAGTAACTTTATCAGGACATGCTCTATTCCGATCGCAGGATCTCTCACTTCTCCTTTTCATT ATTAATTTTTGATTGAAGGTTATCTCACTCAAAAATGACATTTCCCATTGCAGGTTTTTTGCTGGTTGTATTTGTTGGGC TTTGTTTGATGGTTAAGGGTTTGTGAAAATCTATTGGGTCAGACTTCAGAGGCATATTTGGGTTCTGTGTGTTTGATATC AATGGAGGTTGACAGGATTAGCATGTTGCCAGATGAAGTACTTTATCACATTCTCTCTTTTCTTCCAACTCAAATTGCTG CATCCACGAGTGTTCTTTCAAAGAGGTGGAAGCCATTGTGGCTATCAGTTCCTGCTCTCTTCTTTGACGACCGAAGCTAC CTTCTAAATGACAAACCCTATCTATATTTCACAAAGTTCATATATGCAACCATTCTCACCAGAGATGTGCCCATTAGAAC ATTTCGTCTGCAATGTGAGGATTCCCATTTCAACTTTTCTGTTTCCGAACTCAATATATGGGTCAACGCTGCAATAAAAC GTGGACTTGAGAACCTCTACATCCGGCTGCCGCGTAATCAATTGAGCTGGAGCAGCTGCATTTTCAGCTGCAAAACTCTG GTTGTTCTTGAGTTGGTGGGATTAGAAGACCTGGATGTAATTTCTTTTGCTCACCTTCCTTCACTCAAAACTCTGCATTT GATTGATGTTGCGTTTATAGAACGCCAAGATCTTGTATCTTTTGCTGACCTTCCTTCACTCAAAACTCTGGATGTGAAAG ATGCTCACTTTCCAGGAAGACAGTATCTTGTGGATCTTCTTGCTGGATGTCCAAATCTTGAGTATATGCATCTGTGGGTA ATATACTATGATGTTGGATGCATACCTTGTTATAAGAACTTTAAAAGCTTATCTAAATTGGTCAGGGCAGATATACATGC CATTGGTTTTGATATTTTTGTAGAATCTCCTGAGTTTGACAAGGTTTGTATAAATTTTAAAAAGTGTGTTTAACTCGTTT GATTTTGAAAAAAAATGACACTAATGTTTGTTAGTACTCTTTTTTACTCTTGCAGTACCTGGATGACATTCCACTTTTTC CCAATTTAACTCATGCGGAGCTTATGTTGGGATTTGATATGAGCTGGGATTTGGTACTTGCAATACTCAAGCACTGCCCT ATGCTTCAAAATGTTGTCCTTGATATGCAGACACATTATGCATATTACAAGGAGCCGGTTTGGATTTCCCCCTGTTGTGT TCCAGAATGCCTTTCGTCACAGCTTAGGACATGCGACATTATAAATTCTGAAGTCAAGGAAAGTGAGCTGCATTTTGCAA AATATATTATGCAGAATTCAAGAGTTTTACGAACAATGACAATATGGACTCGGGGTTTGTCAGAATTAAATGTCGACAAG ATTGAACTGCTGAAAGAATTGTTCTTATGCCCAAGGAGTTCTACAATTTGTGAACTTTCATTTATATGAAAATGAACGAC AGGCTCTAGTTAGTAGCTGCAAATTGTGTTTAGATGATTGCATTGGTACTTAGTTTATCTGCTTATAGTAAAACTACTAG TGTTTTGAAGGACATGGAACTTGTCTCTTGTTCAATGATAGTCGGTAAATGTCATCTTTTCAAGGAATTGAAGATTTGTA TTTTTAATTAAATGACTAGCTCATTTGAAGTTTTATATCTTTTGTGGACATTTTTTTGGAGTTGAGTTACATCTATATGC TTCCATTTTGTGGTT
CDS sequence (LotjaGi4g1v0342600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGACAGGATTAGCATGTTGCCAGATGAAGTACTTTATCACATTCTCTCTTTTCTTCCAACTCAAATTGCTGC ATCCACGAGTGTTCTTTCAAAGAGGTGGAAGCCATTGTGGCTATCAGTTCCTGCTCTCTTCTTTGACGACCGAAGCTACC TTCTAAATGACAAACCCTATCTATATTTCACAAAGTTCATATATGCAACCATTCTCACCAGAGATGTGCCCATTAGAACA TTTCGTCTGCAATGTGAGGATTCCCATTTCAACTTTTCTGTTTCCGAACTCAATATATGGGTCAACGCTGCAATAAAACG TGGACTTGAGAACCTCTACATCCGGCTGCCGCGTAATCAATTGAGCTGGAGCAGCTGCATTTTCAGCTGCAAAACTCTGG TTGTTCTTGAGTTGGTGGGATTAGAAGACCTGGATGTAATTTCTTTTGCTCACCTTCCTTCACTCAAAACTCTGCATTTG ATTGATGTTGCGTTTATAGAACGCCAAGATCTTGTATCTTTTGCTGACCTTCCTTCACTCAAAACTCTGGATGTGAAAGA TGCTCACTTTCCAGGAAGACAGTATCTTGTGGATCTTCTTGCTGGATGTCCAAATCTTGAGTATATGCATCTGTGGGTAA TATACTATGATGTTGGATGCATACCTTGTTATAAGAACTTTAAAAGCTTATCTAAATTGGTCAGGGCAGATATACATGCC ATTGGTTTTGATATTTTTGTAGAATCTCCTGAGTTTGACAAGTACCTGGATGACATTCCACTTTTTCCCAATTTAACTCA TGCGGAGCTTATGTTGGGATTTGATATGAGCTGGGATTTGGTACTTGCAATACTCAAGCACTGCCCTATGCTTCAAAATG TTGTCCTTGATATGCAGACACATTATGCATATTACAAGGAGCCGGTTTGGATTTCCCCCTGTTGTGTTCCAGAATGCCTT TCGTCACAGCTTAGGACATGCGACATTATAAATTCTGAAGTCAAGGAAAGTGAGCTGCATTTTGCAAAATATATTATGCA GAATTCAAGAGTTTTACGAACAATGACAATATGGACTCGGGGTTTGTCAGAATTAAATGTCGACAAGATTGAACTGCTGA AAGAATTGTTCTTATGCCCAAGGAGTTCTACAATTTGTGAACTTTCATTTATATGA
Protein sequence (LotjaGi4g1v0342600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVDRISMLPDEVLYHILSFLPTQIAASTSVLSKRWKPLWLSVPALFFDDRSYLLNDKPYLYFTKFIYATILTRDVPIRT FRLQCEDSHFNFSVSELNIWVNAAIKRGLENLYIRLPRNQLSWSSCIFSCKTLVVLELVGLEDLDVISFAHLPSLKTLHL IDVAFIERQDLVSFADLPSLKTLDVKDAHFPGRQYLVDLLAGCPNLEYMHLWVIYYDVGCIPCYKNFKSLSKLVRADIHA IGFDIFVESPEFDKYLDDIPLFPNLTHAELMLGFDMSWDLVLAILKHCPMLQNVVLDMQTHYAYYKEPVWISPCCVPECL SSQLRTCDIINSEVKESELHFAKYIMQNSRVLRTMTIWTRGLSELNVDKIELLKELFLCPRSSTICELSFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 47 | 46 | 6.54E-12 | ||
| Gene3D | 3 | 251 | 249 | 4.3E-24 | ||
| PANTHER | 3 | 388 | 386 | 3.4E-79 | – | |
| ProSiteProfiles | 3 | 51 | 49 | 9.391 | ||
| PANTHER | 3 | 388 | 386 | 3.4E-79 | – | |
| Pfam | 5 | 40 | 36 | 8.3E-5 | ||
| SUPERFAMILY | 122 | 295 | 174 | 5.02E-13 | – | |
| Pfam | 154 | 165 | 12 | 0.91 | ||
| Pfam | 179 | 204 | 26 | 0.058 | ||
| Pfam | 315 | 357 | 43 | 9.3E-13 | ||
| SMART | 318 | 391 | 74 | 1.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0342600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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