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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342700 |
| Transcript ID | LotjaGi4g1v0342700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0342700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72241560..72243304) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATACATTTCCGTATTCATCAAAATATAATACGGAAAGTACCTTTCCGTATTCAGTTAAATTGAATACGGAAAGTA CCTTTCCGTAGGGCACTTTTGGGTTTAAAAAAAAAGGGTGGGGCGCGCAGCCTCATAGGGGAGGCCCCAAACCCAACTCC CCCCATAGGTGGGGTGCCAAACTCAACTCCCCCTAACCCTGCCTTCCACTAGTCTCTACTCGTCGGAGGCTGTGTGGTTC GTATTTTTCTTCCTCTCCTCAGTTACCTCTGCTATTAATTCAATTGAAGCTTATCTCACTCAGAAATGGTCTTTTTCAAT CACATGTTGTTTTGCTAGGGTTTGTAAAAATTGGGTCAGTGGCAGATTTGGGTTCTGTGTATTTGAATCAATGGCGGTTG ACAGGATTAGCATGTTGCCAGATGAACTCCTTTGTCACATTCTCTCCTTTCTTCCAACTCCAATGGCTGTAGTCACCAGC ATTCTTTCAAAGAGGTGGAAGCCACTGTGGCTCTCAGTGGTGTCCAATCTCTTCTTTGATGACCAAAGCTCCAAACCCTT TCACTGCTTCACAGACTTCATATATGCAACCATTCTCAACAGAGATTTTCCTATTACAACATTTCGCCTCCAATGTCGAG CTGGTTTGTACCTCTCTGATTTTGACCTCAAGATATGGGTTAATGCTGCAATACGACGCGGGCTTGAGAATCTCTACATC CAGCTGTCCGGTGTTCGATTGAGCTTGAGCAGCTGCATTTTCTGCTGCAATACTCTGGTTGTTCTCAACTTGGCGCGGTT ATTATTGGATCAATTTTCCGTTGTTGATCTTCCTTCACTCAAAACTCTGCATTTGAACGATGTCGGTTTTCCACAACCGC AGAATCTTGTGGATCTTCTTACTAGGTGTCCAATTCTTGAGTATATGGGTCTGAGTGATATATACTATTGGGGTCTTGAG GATGTTCCTAGTAATAAGAACGGTGGAAGCTTATCTAAGTTGGTCAGGGCAGATATACATGATGTTAGTTTCGATATTTT TGTAGGATCTCTTGGCATTGACAAGGTTTGTATATATGTTAAAAAGTGTGTTTAATTTGTTTTAATTTGAAAAATATGTC ACTAATGTTTGTGATTACTCTTTTTTTTACTCTTGCAGTACATGAATGACATTCCCATTTTTCCTAATTTAACTCATCTG GAGCTTACGCGGGAATGGGATATGAGCTGGGATATGGTACTTGCAATGCTCAAGCAGTGCCCTATGCTTCAAAATTTTGT CCTTGATATGCGGAAAAGTTTTGATGATTCTGATGATTTGGTTTGGACTTCCCCCTGTTTTGTTCCTGAATGCCTTTCTT CACAGCTTAGAAAATGTTCTATTATAAATTGTGAAGGCACAGAAAGTGGGCTGTATTTTGCAAAATATATTATGCAGAAT TCAAGAGTTTTACGGACAATGACAATTTGCACTCTGTGTTCCTCAGAGCTAAAGGTCGAATTGCTGAAAGAATTGTCCTC ATGCTCAAGGAGTTCTATGATTTGTCAACTTTCATTTAAATGAAAATGAGTGACAGGCTCTAGTTAGTAGCTGCAAATTG ATTCTATAATGTTAGATTATTGCATTGGTACTTAGTTTATCTACCTATCTACCTATTGTACAACTGCTGATATTTCGAAG GAAATGGAACTTGTCTCTTGTTCAATGGTAGTCCTTAAATGTCATATGTTTTCAACGGAGTGGAG
CDS sequence (LotjaGi4g1v0342700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGACAGGATTAGCATGTTGCCAGATGAACTCCTTTGTCACATTCTCTCCTTTCTTCCAACTCCAATGGCTGT AGTCACCAGCATTCTTTCAAAGAGGTGGAAGCCACTGTGGCTCTCAGTGGTGTCCAATCTCTTCTTTGATGACCAAAGCT CCAAACCCTTTCACTGCTTCACAGACTTCATATATGCAACCATTCTCAACAGAGATTTTCCTATTACAACATTTCGCCTC CAATGTCGAGCTGGTTTGTACCTCTCTGATTTTGACCTCAAGATATGGGTTAATGCTGCAATACGACGCGGGCTTGAGAA TCTCTACATCCAGCTGTCCGGTGTTCGATTGAGCTTGAGCAGCTGCATTTTCTGCTGCAATACTCTGGTTGTTCTCAACT TGGCGCGGTTATTATTGGATCAATTTTCCGTTGTTGATCTTCCTTCACTCAAAACTCTGCATTTGAACGATGTCGGTTTT CCACAACCGCAGAATCTTGTGGATCTTCTTACTAGGTGTCCAATTCTTGAGTATATGGGTCTGAGTGATATATACTATTG GGGTCTTGAGGATGTTCCTAGTAATAAGAACGGTGGAAGCTTATCTAAGTTGGTCAGGGCAGATATACATGATGTTAGTT TCGATATTTTTGTAGGATCTCTTGGCATTGACAAGTACATGAATGACATTCCCATTTTTCCTAATTTAACTCATCTGGAG CTTACGCGGGAATGGGATATGAGCTGGGATATGGTACTTGCAATGCTCAAGCAGTGCCCTATGCTTCAAAATTTTGTCCT TGATATGCGGAAAAGTTTTGATGATTCTGATGATTTGGTTTGGACTTCCCCCTGTTTTGTTCCTGAATGCCTTTCTTCAC AGCTTAGAAAATGTTCTATTATAAATTGTGAAGGCACAGAAAGTGGGCTGTATTTTGCAAAATATATTATGCAGAATTCA AGAGTTTTACGGACAATGACAATTTGCACTCTGTGTTCCTCAGAGCTAAAGGTCGAATTGCTGAAAGAATTGTCCTCATG CTCAAGGAGTTCTATGATTTGTCAACTTTCATTTAAATGA
Protein sequence (LotjaGi4g1v0342700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDRISMLPDELLCHILSFLPTPMAVVTSILSKRWKPLWLSVVSNLFFDDQSSKPFHCFTDFIYATILNRDFPITTFRL QCRAGLYLSDFDLKIWVNAAIRRGLENLYIQLSGVRLSLSSCIFCCNTLVVLNLARLLLDQFSVVDLPSLKTLHLNDVGF PQPQNLVDLLTRCPILEYMGLSDIYYWGLEDVPSNKNGGSLSKLVRADIHDVSFDIFVGSLGIDKYMNDIPIFPNLTHLE LTREWDMSWDMVLAMLKQCPMLQNFVLDMRKSFDDSDDLVWTSPCFVPECLSSQLRKCSIINCEGTESGLYFAKYIMQNS RVLRTMTICTLCSSELKVELLKELSSCSRSSMICQLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 43 | 42 | 6.54E-10 | ||
| ProSiteProfiles | 3 | 52 | 50 | 8.994 | ||
| PANTHER | 4 | 352 | 349 | 1.6E-70 | – | |
| PANTHER | 4 | 352 | 349 | 1.6E-70 | – | |
| Pfam | 5 | 45 | 41 | 2.1E-4 | ||
| SUPERFAMILY | 93 | 312 | 220 | 2.16E-10 | – | |
| Pfam | 286 | 328 | 43 | 6.3E-13 | ||
| SMART | 289 | 359 | 71 | 2.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0342700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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