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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342900 |
| Transcript ID | LotjaGi4g1v0342900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0342900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72263087..72265101) extracted from Lotus japonicus Gifu genome v1.2.
GTTACACACTTCCCGCGTCGCTAATGGCAAACGAGGGTTAGGGTTCTAGCCAGAAAACCCAGCAGCGGAGCAGTGAAAAC GGTACTGTCAAAATCTATTGCTTCTTCAGTCTTGTTCTGAAACCCCACTTCCAATTTCATGAAAAGGAACTCTGTTAGTC TTAGAAAAATTACATTTACAATTTCACAAATTTAGTTGATTATGTCATTTTCAAATTCATGATTTTATTATGTTATTTCA TGTGGGTAATGAGTAATGGCCCCTGAATGTTGTAGTTTGTGTCTCATTGATTTTCATTTTTACTTTGTTTTTTTTTTTGT CTCACTGTCTGAACTTGTGGCTGAGAGGTTTAGTAATTTGATGATTTTAAGGTACAAGGTTGTTATGAGCATGAGCCTTA GAAGTTGGAGGAACTTGGGAACATGCTGCTGACTGGTCTGGATGCTGTGAAAAGCTGTTAGGGTCAGTGGTAGATTTGTG TTCTGTGTGTTATATCAATGGCGGTCGACAGGATTAGCATGTTGCCAGATGAAGTACTTCATCACATTCTCTCTTTTCTC CCTACTCAAATAGCTGCAGCCACAAGTGCTCTTTCAAAGAGGTGGGTGCCACTGTGGCTCTCAGTTCCTGCTCTCTTCTT TGATGACCAAAGCTACCTCCTCAACGACAAATCCTATTTATATTTCGCAAAGTTCATATATGCAATCATTCTCGACAGAG ATGTGCCCATTAGAACGTTTCGTCTGCAATGTGAGCCTTACAGTTCTAACCACCTCTTTAGTTCTGATCTCAAGATATGG GTCAAAGCTGCAATACAACGTGGACTTGAGAATCTCTGCATCCAGATCCCCCATAGAGAGTTTCAACCGGTCTTGAGCAG CTGTATTTTCTGCTGCAAAACTCTGGTTGTTCTCAAGTTGGCGGGGTTAACTTTGGATGAATTTTCTGCTGTTGACCTTC CTTCCCTAAAAACTCTGCATTTGAACGATGTTATGTTTCTAGAACCGCATTATATTGTTGATCTTCTTGTTGGGTGTCCA ATTATCGAGTATATGCATCTAACCGGTATATACTATTTTCTTGCTGACTATTATGTTCCTAGTAGTAAGAGCTTTGGAAG CTTATCTAAGTTGATCAGGGCAGACATAGATGACATTGATTTTGATATTTTCGTAGGATCTCTTGGCATTGACAAGGTTT GTATATATGTTAAAGAAGCGTGTATAACTTGTTTTAATTTTTTAAAAAGGTCACTAATGTTTGTGGTTACTCTTTTTGAC TCTTGCAGTACCTGGATGGCATTCCCATTTTCCCCAATTTAACTCATGTGGAGCTTACGGGGGATTGGAATATTAGCTGG CATATGGTATTTGCAATGCTCAAGCAGTGCCCTATGCTTCAAAATTTTGTCCTTGATATGCAGAAAAGTTATGATGATTC TGATGATTTGGTTTGGATTTCCCCTTGTTCTGTTCCTGAATGCCTTTCTTCACAACTTAGGAGATGTTCTATTATAAATT ATGAAGGCACGGAAAGTGAGCTGCATTTTGCAAAATATATTATGCAGAATTCAAGAGTTTTACGGAAGATGACAATATTC ACTCTGTGTTCCTCAGAGTTAGAAGTTGACAAGCTTGAACTGCTGAAAGACTTGTCCTTATGCCCAAGGAGTTCTACGAT ATGTGAACTTTCATTTAAATGAAAATGAATGATATGCTCTACTTAGTAGCTGCAAATTGTGTTTAGAACTTTAGATGATT GCATTGTACTTAGTATATCTACCTTTTCCGATGAAGGGGAAACAAAAGTATATCTACCTACAACTGCTAGTGTTTTGAAG GACATGGAATTTGTCTCTTGTTCAATGATAGTTCTTAAATATCACTTGTGAAGATTTGTGTTTTTAATTAAATGACTAGC TTCTTTGAAGTTACAGTATATACCTTTTGTGTACAAATTTTTGGAGTTGAGTTACACCTATATGCTCCCATTTTATTGAT CTGCTAAATATTGAT
CDS sequence (LotjaGi4g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTCGACAGGATTAGCATGTTGCCAGATGAAGTACTTCATCACATTCTCTCTTTTCTCCCTACTCAAATAGCTGC AGCCACAAGTGCTCTTTCAAAGAGGTGGGTGCCACTGTGGCTCTCAGTTCCTGCTCTCTTCTTTGATGACCAAAGCTACC TCCTCAACGACAAATCCTATTTATATTTCGCAAAGTTCATATATGCAATCATTCTCGACAGAGATGTGCCCATTAGAACG TTTCGTCTGCAATGTGAGCCTTACAGTTCTAACCACCTCTTTAGTTCTGATCTCAAGATATGGGTCAAAGCTGCAATACA ACGTGGACTTGAGAATCTCTGCATCCAGATCCCCCATAGAGAGTTTCAACCGGTCTTGAGCAGCTGTATTTTCTGCTGCA AAACTCTGGTTGTTCTCAAGTTGGCGGGGTTAACTTTGGATGAATTTTCTGCTGTTGACCTTCCTTCCCTAAAAACTCTG CATTTGAACGATGTTATGTTTCTAGAACCGCATTATATTGTTGATCTTCTTGTTGGGTGTCCAATTATCGAGTATATGCA TCTAACCGGTATATACTATTTTCTTGCTGACTATTATGTTCCTAGTAGTAAGAGCTTTGGAAGCTTATCTAAGTTGATCA GGGCAGACATAGATGACATTGATTTTGATATTTTCGTAGGATCTCTTGGCATTGACAAGTACCTGGATGGCATTCCCATT TTCCCCAATTTAACTCATGTGGAGCTTACGGGGGATTGGAATATTAGCTGGCATATGGTATTTGCAATGCTCAAGCAGTG CCCTATGCTTCAAAATTTTGTCCTTGATATGCAGAAAAGTTATGATGATTCTGATGATTTGGTTTGGATTTCCCCTTGTT CTGTTCCTGAATGCCTTTCTTCACAACTTAGGAGATGTTCTATTATAAATTATGAAGGCACGGAAAGTGAGCTGCATTTT GCAAAATATATTATGCAGAATTCAAGAGTTTTACGGAAGATGACAATATTCACTCTGTGTTCCTCAGAGTTAGAAGTTGA CAAGCTTGAACTGCTGAAAGACTTGTCCTTATGCCCAAGGAGTTCTACGATATGTGAACTTTCATTTAAATGA
Protein sequence (LotjaGi4g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDRISMLPDEVLHHILSFLPTQIAAATSALSKRWVPLWLSVPALFFDDQSYLLNDKSYLYFAKFIYAIILDRDVPIRT FRLQCEPYSSNHLFSSDLKIWVKAAIQRGLENLCIQIPHREFQPVLSSCIFCCKTLVVLKLAGLTLDEFSAVDLPSLKTL HLNDVMFLEPHYIVDLLVGCPIIEYMHLTGIYYFLADYYVPSSKSFGSLSKLIRADIDDIDFDIFVGSLGIDKYLDGIPI FPNLTHVELTGDWNISWHMVFAMLKQCPMLQNFVLDMQKSYDDSDDLVWISPCSVPECLSSQLRRCSIINYEGTESELHF AKYIMQNSRVLRKMTIFTLCSSELEVDKLELLKDLSLCPRSSTICELSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 48 | 47 | 4.32E-11 | ||
| PANTHER | 3 | 367 | 365 | 9.5E-82 | – | |
| PANTHER | 3 | 367 | 365 | 9.5E-82 | – | |
| Gene3D | 4 | 368 | 365 | 7.3E-22 | ||
| Pfam | 5 | 36 | 32 | 6.1E-5 | ||
| SUPERFAMILY | 101 | 278 | 178 | 4.91E-12 | – | |
| Pfam | 293 | 336 | 44 | 4.7E-16 | ||
| SMART | 297 | 370 | 74 | 1.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0342900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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