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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0343000 |
| Transcript ID | LotjaGi4g1v0343000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine-glutamic acid dipeptide repeats protein; TAIR: AT1G09040.1 arginine-glutamic acid dipeptide repeat protein; Swiss-Prot: sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein; TrEMBL-Plants: tr|A0A0B2P281|A0A0B2P281_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0343000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72266068..72271519) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTAGTTTTTTATAATTCTATTTTTCTCATAATTTTTTCTTCTCTTTCTCTGCCTCCTTCGACCCTTCACCACAGA CAGTCTCCTCCAATTCAACCATCGTAGCAGCAGCCATGAAACTTCTTCTTCTTCCTTAACACAGGTACCCTTTTCCCTCT TACGCCAAAAAAATATAAACTTTTTTTTCTCTATGCGCGTGTTTGTTTCTGTGTTTATATACATACATAACTCTGTTTTT TTTGTTCACGTTTTCTTTATTTTCAATCTGCAACTTGCTAATCGCTGTGTCACCATCACGACCCATTTTTGCAGCTTCGT TTCTCCATGCCCCGTGGTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCATGGAGGTAGGTGCCGCTTCGAATCTTCTCTC TCTCTCGTGGTTGGTTTGTTTTCTTTGTTGTACGATTTCAATGTATGTACTTGCAGTTGTTGGTGTTTGTCTTCTCGTAG TGAATAACTCGAATTTTCTCGGATCATATCTGAGTTTTTCTTTTCTCACTGTGAAACCTGTGCCTATACTTGTCTGTTTC TTGCTGCTTTTATTTATTTATTTATTTTGTTTATTATATATGTATTTTCACTATTTTGTATGAGTATGTGTGTGTATTTA TCTCGTGTACGGTTTCTGCTATGAATGTTGTTGGCATTTGAGAGTAATGTGCTTAATGGGGTGTCATGCATTTGTGTAAA GTTTTCAACTTGGTTGTTTGGTTGCTCTGGTATCGTTTCTGTGTTATGGAAATGGATCTGGTTTTTAGCTTTTGCAGACG GTGCGCCTTTGCTTTCGTGTTGCTTACTTCATATCACAACTAATATGTATTTTTATTTTTTTCTAGATAGCAATGTTTGT TCTTGTGAGATGATTTGGTTGGTATAAACTTGAGTTTTATTCATAAGCACTGTAGTTTAATTTGGGATTTTGTACTTACA TGAGGATGCTGTATTTATTTATATTTAGGGGAAATTTAATAATAATTATACCCTTCATAAAAGTTTTCTTTTTTATTTTA TTTTCTAGATTTTTTTCCCTTATTAGTTTGAATTTCTCCATTTTTGTGGAGCGGAACTTGCGATTATTAGAATTTGGAAT ATAATTTATTCGTTAATCGTATCACCCTGTTGTTATCCTAATGCTGCTGAAACATTTTATTTATTATTGTAGCAACTCAG TTGTGGATTTGTAGGATGCCTTAGTGTATAATTTAGGTTGACTAGTGAGGAGGGTCACTGGTTTGGTTCTTGCTCGCTCC TAGTTGAAGGTTAGGTGAAAAGTTCTCAGTATCATTTAAGCTCTGAGGTTTTGCTCAATTTAGTAGCATTTACTTCAGAA AATTTTAACTTTACATGAAACTGGAAGAAATGAACATTGGTGTCATGTTGAAATAGGCTGTAGATTCTTGCTTGCCGCTT TGTTTCTGTTGTCATTTCATTGCAAAAACATTATCAGGTTGAATATGTTAAACTGCACAGTATATAGTATGAGTGATGTT CAATGAAAGACGAGCAGACTGGTTTACGAGTTTATCCATAACTTGAACTATTCAAGCGATAAGAAGCATGTCTGTATTAC TTTCTTATATTTTCTTTGAAAACGTTTGAATTTTTGGACAGGAGGATGCAGTTCAAGCTATTCATGAGCAAGTGGATGAA CAATCACTTTCTCCGGAATTGTCTGATGTTTATGATGTTTTCGGTGATCCAGAAATATTTCCTCGGGTGGGTGAGAAGTA CCAGGTTGAAATTCCACCTTTAACTTCAAAATCTGACCATTCTTGGTTTCAAAGGAAGATACCTAAGAAAGAAGGCGGTA GTCTCAATAAGTATCTAGTAGGATTGCCCATCCCCATAATTTGGATCAAGGATGAAGTGGAGAGCAATAAGCCTGATCTG CTGAAAAATGAGTGCAAGTTCATTGGAGTTGCCAATAAAATTGAATCTTCCGGAGGTGAATGTATCAAAGAGATCCAAAT TGTTAAGAAGTTGAATCCTAATCTGGAAGCCATTGACAGTACATTGGTCAATGGAGTGCATTTGGGAGGATTGGAAAATT CAAATGCACAGCAAGAAACAAAGATTGGGATGCATGACAAGCTGAGAGGCGGAGGTGATTGTCTGGTTCCCGGGTCTGCA AGTGACGCCTGGAATGAAATTGAAGAGGCGAGTTTCACCCTTGGCTTGTATATATTTGGGAAGAACCTTGATCAAGTGAA AAGATTTATTGGCAATAAGAAGATGGGGGATGTACTGTTATTCTATTATGGGAAATTTTACAAGTCTGAAAAATATCAAA GATGGTCTAGATGTAGGAAAATGAGAAGTAGAAAATGCATTTTTGGGCAAAAGATTTTCACAGGACCAAGGCAACAAGAG CTTTTGTCACGTTTACTACCGAATGTATCAGAGGAATGCCGAAGTAGATTACTTGAGGTACGGACTTACATTGTTCCAAA TTTTATGCCATTTTAATATCATCATTGCTTCACTGTCATGGTGCCAGAGTTCACCGATGTTAACTGTTATTCTTGAATAA ACATCACTTCTGAAAGAATTGATGACTTTTAGTTTTTGGTGAGTATGAGTTTCAGAGCCAAACTTTCTTTCAAAAGAACT CATGGTGATTAAATTGGATCAAAGGCATACCTAGTTGAGTTTTGTTTCTTTATCATAAAAGAAAAGTTCTACATACAAAC ATTGCCATTCTAATTTGAAAATATGAACATGTCACACATTTAATCTTATGCTGATCAAACCATCTTTGCTCGTCTGCTTC CTATTAACATCTTCTTTTACTTATTTTTTACTATTAAATATGTTATAACTTTAATAAATTCAATTGCTTGTTAGGTGTCC AAGACATTTGTAGAGGGGAAAATACTTCTAGAAGATTATGTTTCGATTTTGAAGGCTTCAGTGGGGCTCAAAGCACTTGT TGAGGGAGTAGGAGTTGGTAAAGGGAAAGAAGATCTTACCGGTCTCACTGCAGATTCTGTGAAACCCACTCAAACACTTC CTGTTCACCCAGAAATACCAGCGGGCAAAGCATGTTCAATGCTGACACATTCAGAAATAATAAGCTTTCTAACTGGTAAT TTCAGATTAAGCAAAGCTCGGACGAGTGATCTCTTCTGGGAAGCTGTTTGGCCTCGTTTACTTGCCAGAGGTTGGCACTC TGAGCAGCCAGGTGGTTCTAATTATGCTTATGCTTCTAAGAATCCTCTGGTCTTCCTTGTCCCTGGTGTCAAAAAGTTTT CAAGGAAGCTAGTGAAGGGGAATCACTATTATGATTCTGTAAGTGATGTCCTCGGTAAAGTCGCATCTGATCCTGAGCTA ATTGAGCTGGAGACAATTGCAGATAATGATTGCACAGGCAAGGAAGGAAATGGGTGCACAAAAGATACAAAGCCGGACCA TGAAAATTCCCCTGATAGGCCGCGCCATTGCTATCTCAAGGTAAAAACTCCAAATCGCATTGCAGATGGAATGAAATTCA CTGTTGTAGACACAAGTCTGGCCAGTGAAAAGATGACAAAGGTGAGAGAACTGAGAAGCTTACCATTTGGAGTTTTAAAA GCTTCTATTTTTGAAAGTGATTCAGATGATGAGAACACATCAGAGGAGGAAACAAATGAACCTGAGTCTGTCAATACCGC ATGCTTTGATAGGGGCAAGAATGATTCCCCTAAAGCCAGTAAATGCAACATTGGTAAGGGTGTCTCTTCAAACTTAAATG ATTTAGAAAAAAAACCTTCAAAAGAGGAGTTTCCATGGAGCAATGGAGGTTCTAATAGCCTATCTACTAACTCCATTGAT CAGAAGACAGATTTGTTGAGTATCAAAGTGAGAAGAGATAGGATGAAGTGCCAACCACTCCAGAAAATGGCATCTGATAA CAAAAATGATCCATTCCCTGTTACGAAAAGGCGGAGGAGAGTAGCTTCCTGCAGCCGTGCCAAGAAAATTAGCAACACGG CTAATTTCATCGCGGTTCCTAGAGTAAAACAAGAAGAGATTTGCACCAGAGTAAAGCAAGAGATCAGTTTATGTCCAAAT CTGGACAATTCAAAATATAGTGAGAATGCAACTGCTAACTTCTTTGTGGCTCCCAGAGTAAAACAAGAGAAGGCCTGTTA CATCCCTTACAGTTCAAAATCTAGTGAGAGTGCTCTATCGCGGGAAGTTCCATCTCAGGAGAACAAGACATTAGCAGATC CTCTGCCAAATCCAAGCTTAATCACCAACAGAGAAGTTGTTCCTGATACTAGTTCTTTCGCCACAAAGGATCAGCATGAG AAGCCGCAGCTGCGGACTATGATTGACCTTAACTTACCTGTTTCACCAGAAGTTGATGCTGACGAACCTTTAGTGAACGA AGTAACACAAGGTAACACAAGCAAGGAATCAGATGAGCTCAGAGGAGGAATAACCTCCACACCTGTGGATAGCTCTGAGC ATCAGACTGATACGCATGCTCGGAGGCAGGGTACAAGAAACCGCCCACCGACAACAAAAGTGCTGGAAGCTTTTGCATTT GGATATCTAGACAAAAAGGAGAAGCGCAAGCGTAAAGATATCCAGGACAGTTCGGTTTCAAGACCTTCCCGGCGCAAATG TCGTAAGGAGGTGGTAGGTTCTTCTAGTGATTGTGCAGGTTTTGAAAAAGAGGAAACAAGAAATGTTTGTAATGGCAATG GTAATGGTAGCACCGGCAGCAACAGTGATGTGATACAAACAGACTTCAAGTGTAATGAAGGATGAAAGGAACCAAGTTTT CAAGTTCAGTTCTGGACTCAGGATGGGAATGATCTATGCTGTTGATGATTGATTAACTGGTCTTTCACTCATTGAACTAG TACAGCGCATAAGAGATATTTGATAGTTGATACAAAATTTGAAGGAAGGTTTATACTCTAGAGTCTAGTCTTTCCAAGAG AATGCATGGTTGTAAATCTGAACACAGAAATCCCTTTAGTCTTCTCAGCTTTGCACTCAATAGAATGTGAGGAAACTTCC TAGTCTTCTGGAATTGAAGTTTAAGGCTATCTCATGTCCTAGTAGCAGTGTCAATCTCAAACAAGGTTTTAGACACAGCT AGCCAATGCACATTATTACTCTAGTTTGCTTCTTTTTTTAATCATTATCAGATGTTTGACCTCATCAATTCTGCTAGATG ATGAGAGTTAAGGAAAAATTAACATTACAGTAGGCTTTTCCCCTGTCTGGGTGTGTCCTCCTGGTTGATGACTCCAGATA TTCGTTATACATGCATATATCAAGTGATTTTCATTCATAATTAATTGCTGGTTGTTGCTTGTAGTCCTTTTACTTCAGAT ATAAATTGGTTTATGTCAGTTTGGATGTCAGTTGAGTTGAGTTGAGTGCAACGTGAACGAACTTTCATTTCAATTTAAAA GAGTTCTACTAA
CDS sequence (LotjaGi4g1v0343000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCGTGGTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCATGGAGGAGGATGCAGTTCAAGCTATTCATGAGCAAGT GGATGAACAATCACTTTCTCCGGAATTGTCTGATGTTTATGATGTTTTCGGTGATCCAGAAATATTTCCTCGGGTGGGTG AGAAGTACCAGGTTGAAATTCCACCTTTAACTTCAAAATCTGACCATTCTTGGTTTCAAAGGAAGATACCTAAGAAAGAA GGCGGTAGTCTCAATAAGTATCTAGTAGGATTGCCCATCCCCATAATTTGGATCAAGGATGAAGTGGAGAGCAATAAGCC TGATCTGCTGAAAAATGAGTGCAAGTTCATTGGAGTTGCCAATAAAATTGAATCTTCCGGAGGTGAATGTATCAAAGAGA TCCAAATTGTTAAGAAGTTGAATCCTAATCTGGAAGCCATTGACAGTACATTGGTCAATGGAGTGCATTTGGGAGGATTG GAAAATTCAAATGCACAGCAAGAAACAAAGATTGGGATGCATGACAAGCTGAGAGGCGGAGGTGATTGTCTGGTTCCCGG GTCTGCAAGTGACGCCTGGAATGAAATTGAAGAGGCGAGTTTCACCCTTGGCTTGTATATATTTGGGAAGAACCTTGATC AAGTGAAAAGATTTATTGGCAATAAGAAGATGGGGGATGTACTGTTATTCTATTATGGGAAATTTTACAAGTCTGAAAAA TATCAAAGATGGTCTAGATGTAGGAAAATGAGAAGTAGAAAATGCATTTTTGGGCAAAAGATTTTCACAGGACCAAGGCA ACAAGAGCTTTTGTCACGTTTACTACCGAATGTATCAGAGGAATGCCGAAGTAGATTACTTGAGGTGTCCAAGACATTTG TAGAGGGGAAAATACTTCTAGAAGATTATGTTTCGATTTTGAAGGCTTCAGTGGGGCTCAAAGCACTTGTTGAGGGAGTA GGAGTTGGTAAAGGGAAAGAAGATCTTACCGGTCTCACTGCAGATTCTGTGAAACCCACTCAAACACTTCCTGTTCACCC AGAAATACCAGCGGGCAAAGCATGTTCAATGCTGACACATTCAGAAATAATAAGCTTTCTAACTGGTAATTTCAGATTAA GCAAAGCTCGGACGAGTGATCTCTTCTGGGAAGCTGTTTGGCCTCGTTTACTTGCCAGAGGTTGGCACTCTGAGCAGCCA GGTGGTTCTAATTATGCTTATGCTTCTAAGAATCCTCTGGTCTTCCTTGTCCCTGGTGTCAAAAAGTTTTCAAGGAAGCT AGTGAAGGGGAATCACTATTATGATTCTGTAAGTGATGTCCTCGGTAAAGTCGCATCTGATCCTGAGCTAATTGAGCTGG AGACAATTGCAGATAATGATTGCACAGGCAAGGAAGGAAATGGGTGCACAAAAGATACAAAGCCGGACCATGAAAATTCC CCTGATAGGCCGCGCCATTGCTATCTCAAGGTAAAAACTCCAAATCGCATTGCAGATGGAATGAAATTCACTGTTGTAGA CACAAGTCTGGCCAGTGAAAAGATGACAAAGGTGAGAGAACTGAGAAGCTTACCATTTGGAGTTTTAAAAGCTTCTATTT TTGAAAGTGATTCAGATGATGAGAACACATCAGAGGAGGAAACAAATGAACCTGAGTCTGTCAATACCGCATGCTTTGAT AGGGGCAAGAATGATTCCCCTAAAGCCAGTAAATGCAACATTGGTAAGGGTGTCTCTTCAAACTTAAATGATTTAGAAAA AAAACCTTCAAAAGAGGAGTTTCCATGGAGCAATGGAGGTTCTAATAGCCTATCTACTAACTCCATTGATCAGAAGACAG ATTTGTTGAGTATCAAAGTGAGAAGAGATAGGATGAAGTGCCAACCACTCCAGAAAATGGCATCTGATAACAAAAATGAT CCATTCCCTGTTACGAAAAGGCGGAGGAGAGTAGCTTCCTGCAGCCGTGCCAAGAAAATTAGCAACACGGCTAATTTCAT CGCGGTTCCTAGAGTAAAACAAGAAGAGATTTGCACCAGAGTAAAGCAAGAGATCAGTTTATGTCCAAATCTGGACAATT CAAAATATAGTGAGAATGCAACTGCTAACTTCTTTGTGGCTCCCAGAGTAAAACAAGAGAAGGCCTGTTACATCCCTTAC AGTTCAAAATCTAGTGAGAGTGCTCTATCGCGGGAAGTTCCATCTCAGGAGAACAAGACATTAGCAGATCCTCTGCCAAA TCCAAGCTTAATCACCAACAGAGAAGTTGTTCCTGATACTAGTTCTTTCGCCACAAAGGATCAGCATGAGAAGCCGCAGC TGCGGACTATGATTGACCTTAACTTACCTGTTTCACCAGAAGTTGATGCTGACGAACCTTTAGTGAACGAAGTAACACAA GGTAACACAAGCAAGGAATCAGATGAGCTCAGAGGAGGAATAACCTCCACACCTGTGGATAGCTCTGAGCATCAGACTGA TACGCATGCTCGGAGGCAGGGTACAAGAAACCGCCCACCGACAACAAAAGTGCTGGAAGCTTTTGCATTTGGATATCTAG ACAAAAAGGAGAAGCGCAAGCGTAAAGATATCCAGGACAGTTCGGTTTCAAGACCTTCCCGGCGCAAATGTCGTAAGGAG GTGGTAGGTTCTTCTAGTGATTGTGCAGGTTTTGAAAAAGAGGAAACAAGAAATGTTTGTAATGGCAATGGTAATGGTAG CACCGGCAGCAACAGTGATGTGATACAAACAGACTTCAAGTGTAATGAAGGATGA
Protein sequence (LotjaGi4g1v0343000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRGSSSSSSSSSSMEEDAVQAIHEQVDEQSLSPELSDVYDVFGDPEIFPRVGEKYQVEIPPLTSKSDHSWFQRKIPKKE GGSLNKYLVGLPIPIIWIKDEVESNKPDLLKNECKFIGVANKIESSGGECIKEIQIVKKLNPNLEAIDSTLVNGVHLGGL ENSNAQQETKIGMHDKLRGGGDCLVPGSASDAWNEIEEASFTLGLYIFGKNLDQVKRFIGNKKMGDVLLFYYGKFYKSEK YQRWSRCRKMRSRKCIFGQKIFTGPRQQELLSRLLPNVSEECRSRLLEVSKTFVEGKILLEDYVSILKASVGLKALVEGV GVGKGKEDLTGLTADSVKPTQTLPVHPEIPAGKACSMLTHSEIISFLTGNFRLSKARTSDLFWEAVWPRLLARGWHSEQP GGSNYAYASKNPLVFLVPGVKKFSRKLVKGNHYYDSVSDVLGKVASDPELIELETIADNDCTGKEGNGCTKDTKPDHENS PDRPRHCYLKVKTPNRIADGMKFTVVDTSLASEKMTKVRELRSLPFGVLKASIFESDSDDENTSEEETNEPESVNTACFD RGKNDSPKASKCNIGKGVSSNLNDLEKKPSKEEFPWSNGGSNSLSTNSIDQKTDLLSIKVRRDRMKCQPLQKMASDNKND PFPVTKRRRRVASCSRAKKISNTANFIAVPRVKQEEICTRVKQEISLCPNLDNSKYSENATANFFVAPRVKQEKACYIPY SSKSSESALSREVPSQENKTLADPLPNPSLITNREVVPDTSSFATKDQHEKPQLRTMIDLNLPVSPEVDADEPLVNEVTQ GNTSKESDELRGGITSTPVDSSEHQTDTHARRQGTRNRPPTTKVLEAFAFGYLDKKEKRKRKDIQDSSVSRPSRRKCRKE VVGSSSDCAGFEKEETRNVCNGNGNGSTGSNSDVIQTDFKCNEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 17 | 916 | 900 | 0.0 | – | |
| PANTHER | 17 | 916 | 900 | 0.0 | – | |
| Gene3D | 187 | 251 | 65 | 3.0E-6 | – | |
| ProSiteProfiles | 188 | 240 | 53 | 10.431 | ||
| MobiDBLite | 462 | 487 | 26 | - | – | |
| MobiDBLite | 465 | 487 | 23 | - | – | |
| MobiDBLite | 536 | 608 | 73 | - | – | |
| MobiDBLite | 727 | 750 | 24 | - | – | |
| MobiDBLite | 786 | 843 | 58 | - | – | |
| MobiDBLite | 796 | 823 | 28 | - | – | |
| MobiDBLite | 856 | 882 | 27 | - | – | |
| MobiDBLite | 856 | 924 | 69 | - | – | |
| MobiDBLite | 898 | 924 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0343000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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