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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017884
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 99 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.344s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0057319.1
n.a. Lin-9-like protein [Medicago truncatula] gi|357441687|ref|XP_003591121.1| chr0 18784878 18787603 +
2 domain predictions
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Lj0g3v0060059.1
n.a. PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1| chr0 19969290 19974373 -
2 domain predictions
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Lj0g3v0115319.2
n.a. PREDICTED: TSL-kinase interacting protein 1-like [Glycine max] gi|356559298|ref|XP_003547937.1| chr0 50675535 50684687 -
2 domain predictions
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Lj0g3v0188229.1
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr0 91913768 91916282 +
2 domain predictions
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Lj0g3v0212129.1
n.a. MYB transcription factor MYB57 [Glycine max] gi|351721486|ref|NP_001235675.1| chr0 106991900 106994399 -
2 domain predictions
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Lj0g3v0221649.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr0 113870294 113879963 -
2 domain predictions
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Lj0g3v0221649.2
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr0 113872175 113879963 -
2 domain predictions
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Lj0g3v0226419.1
n.a. PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| chr0 116953884 116957590 +
2 domain predictions
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Lj0g3v0338399.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr0 177191633 177192009 +
2 domain predictions
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Lj1g3v0862930.2
n.a. PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max] gi|356518555|ref|XP_003527944.1| chr1 11043029 11050103 +
2 domain predictions
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Lj1g3v1077720.1
n.a. Uncharacterized protein TCM_026631 [Theobroma cacao] gi|508719566|gb|EOY11463.1| chr1 13210851 13214413 -
2 domain predictions
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Lj1g3v1486310.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi|502133322|ref|XP_004501720.1| chr1 17792511 17797863 +
2 domain predictions
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Lj1g3v2113670.1
n.a. PREDICTED: protein RADIALIS-like 1-like [Cicer arietinum] gi|502131511|ref|XP_004501008.1| chr1 25344913 25346408 -
2 domain predictions
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Lj1g3v2113670.2
n.a. PREDICTED: protein RADIALIS-like 1-like [Cicer arietinum] gi|502131511|ref|XP_004501008.1| chr1 25344913 25346408 -
2 domain predictions
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Lj1g3v2296480.1
n.a. DnaJ homolog subfamily C member [Medicago truncatula] gi|357467291|ref|XP_003603930.1| chr1 27041616 27041873 +
2 domain predictions
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Lj1g3v2300730.1
n.a. PREDICTED: transcription factor DIVARICATA-like [Cicer arietinum] gi|502104025|ref|XP_004492415.1| chr1 27134189 27136277 +
2 domain predictions
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Lj1g3v3404340.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] gi|356517915|ref|XP_003527631.1| chr1 39229070 39231969 -
2 domain predictions
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Lj1g3v4024040.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr1 47614675 47619631 -
2 domain predictions
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Lj1g3v4104780.1
n.a. MYB transcription factor MYB142 [Glycine max] gi|351725763|ref|NP_001236080.1| chr1 48689761 48690875 -
2 domain predictions
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Lj1g3v4139540.2
n.a. PREDICTED: transcription factor DIVARICATA-like [Cicer arietinum] gi|502097263|ref|XP_004490951.1| chr1 49073167 49074810 +
2 domain predictions
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Lj1g3v4913230.1
n.a. Uncharacterized protein TCM_004570 [Theobroma cacao] gi|508703096|gb|EOX94992.1| chr1 59464684 59470650 +
2 domain predictions
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Lj1g3v4931150.1
n.a. Uncharacterized protein TCM_026631 [Theobroma cacao] gi|508719566|gb|EOY11463.1| chr1 59870682 59875533 -
2 domain predictions
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Lj2g3v1744980.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356503013|ref|XP_003520307.1| chr2 26869751 26870767 +
2 domain predictions
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Lj3g3v0786220.1
n.a. RADIALIS [Medicago truncatula] gi|357456275|ref|XP_003598418.1| chr3 9345367 9346434 -
2 domain predictions
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Lj3g3v3338570.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3D-like [Cicer arietinum] gi|502149174|ref|XP_004507421.1| chr3 41045149 41050634 +
2 domain predictions
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Lj4g3v0973380.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356503013|ref|XP_003520307.1| chr4 14157168 14157623 +
2 domain predictions
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Lj4g3v1787120.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr4 25344658 25346283 +
2 domain predictions
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Lj4g3v2351040.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508714586|gb|EOY06483.1| chr4 32455976 32461317 -
2 domain predictions
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Lj4g3v2371620.1
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| chr4 32657217 32664868 -
2 domain predictions
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Lj4g3v2371620.2
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| chr4 32657395 32659980 -
2 domain predictions
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Lj4g3v2691870.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356525975|ref|XP_003531595.1| chr4 36263484 36264586 +
2 domain predictions
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Lj5g3v0104840.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr5 876730 877937 +
2 domain predictions
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Lj5g3v1839400.1
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
2 domain predictions
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Lj5g3v1839400.2
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
2 domain predictions
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Lj5g3v2298100.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr5 33860250 33860626 +
2 domain predictions
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Lj6g3v0214740.1
n.a. PREDICTED: transcriptional adapter ADA2-like [Glycine max] gi|356551285|ref|XP_003544007.1| chr6 2162701 2173237 +
2 domain predictions
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Lj6g3v0607190.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502129228|ref|XP_004500230.1| chr6 6009628 6012321 +
2 domain predictions
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Lj6g3v0933490.2
n.a. Transcription factor tfiiib component [Medicago truncatula] gi|357519631|ref|XP_003630104.1| chr6 10336670 10342728 +
2 domain predictions
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Lj6g3v1742780.1
n.a. PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1| chr6 19570843 19575861 -
2 domain predictions
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Lj6g3v1919360.1
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| chr6 21794206 21801643 +
2 domain predictions
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LotjaGi1g1v0081100_LC.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|I3STE6|I3STE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0081100_LC LjG1.1_chr1 11713714 11716387 -
2 domain predictions
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LotjaGi1g1v0081200.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151S1M9|A0A151S1M9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0081200 LjG1.1_chr1 11725813 11728383 -
2 domain predictions
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LotjaGi1g1v0123300.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0123300 LjG1.1_chr1 19534884 19538910 -
2 domain predictions
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LotjaGi1g1v0123300.2
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0123300 LjG1.1_chr1 19534930 19538827 -
2 domain predictions
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LotjaGi1g1v0264000.1
n.a. SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000 LjG1.1_chr1 64650364 64665077 +
2 domain predictions
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LotjaGi1g1v0264000.2
n.a. SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000 LjG1.1_chr1 64650974 64664536 +
2 domain predictions
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LotjaGi1g1v0336400.1
n.a. SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0336400 LjG1.1_chr1 79598271 79604703 +
2 domain predictions
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LotjaGi1g1v0438200.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A072U1U5|A0A072U1U5_MEDTR MYB transcription factor MYB51; Found in the gene: LotjaGi1g1v0438200 LjG1.1_chr1 93291087 93294260 +
2 domain predictions
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LotjaGi1g1v0569600.1
n.a. SWI/SNF complex subunit SWI3B-like protein; TAIR: AT2G33610.1 switch subunit 3; Swiss-Prot: sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B; TrEMBL-Plants: tr|I1K790|I1K790_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569600 LjG1.1_chr1 110246313 110252412 -
2 domain predictions
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LotjaGi1g1v0767100.1
n.a. Arginine-glutamic acid dipeptide repeats; TAIR: AT2G47820.1 arginine-glutamic acid dipeptide repeat protein; Swiss-Prot: sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein; TrEMBL-Plants: tr|A0A0R0KMJ8|A0A0R0KMJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0767100 LjG1.1_chr1 133978182 133984363 +
2 domain predictions
 –