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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344900 |
| Transcript ID | LotjaGi4g1v0344900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G18560.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086; TrEMBL-Plants: tr|K7L3R3|K7L3R3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72484752..72486233) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCACACTGCACCTACCTTCTGCAGCCCCATTCTTCTGTTCTGTAGCACTCTCTAGTCTCTTCAGTTAGCTAGCACTA TTTAACTTCCAACAATACCTTTAACATTTTCTCACCTCATTGAATCCACATTTTCCTTGCCATTTTCCAAGCTATGTCAA CCTCTAAAACCTCCTTCAAAGGATCATCATATGATCCAAGTCAAACCCAAATGTGCCTATCTCTTCTTCAAAGAAACACT TCTCCTTGTGGTGAGAGAAGAGGTAAGAGGAAGCAAGCAGAACCAGGAAGGTTTCTTGGTGTTAGGAGAAGACCATGGGG TCGCTATGCCGCTGAAATCAGAGACCCTTCAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCTG CTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACTCTGACATCAATTTC CAACCTCTTATAGCCACTACTCCTATGGATGATGTTAGAGTTCAAGCTCTCTTGCCAGCTTCAGAGCTACTCACTCACAC TACTCAGAGAAAACAACAAATAACCAATCAGAATAGCATGTCTCAGCTTGACAATGCTCACAGTGAAAAAAAGTCAAACA CCATATGTGCTGAAACTTCATATGGGTCAGTTCAGGATGAAAATTTCTTCTTTTCCAATGATTCTAATAACTCTGGTTAT CTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTACTTCAAGTGATCAAAAGATTAGCACAATTTCTATGGAGAGTGC TAATCAGCTAAATGTTGGCATGGCTTCATTCTCTGAAGAAGCCACAAAAATGCCACCACGTTCTAGCTTTTCAGAGTTTT CTTATCCAAGTGAAGGTTTCTGGGAGGATCAGCATTCATGGGATTGGAGTTCCAATGAACTTTCAGCTATATTTAACAAC CCATTAAGGGTTGAAGATAGGTGCATGGATACATTATATGAGTATCAAATCACTGACTGTCCAAGCTATGGGCTAATGAA CCAGATTGCTTCTTCATCAGCAACCTGTTCTCCATCATTTCCACCCTTTGGTGGGGATGTAGACTTGGGATACCCACTCT TCTGAGCTTTGAATGATTGCTTGTATCAAGGAGTGAAGCTAGGAAAATGACTATAAGACATGTGCGTGGTGGTGACACTT GACAAACAAGGATTGAGAAAGAAAAAGAAGCAGAGAAATAAGTAATAGATATGATATATGATGAGTGTGACAAAAAAAAT ATTGATGAATAGAAAAATGAGGGGCATGTAATGTGTTTAATTGCATGATTTAAGTGTCTAAATATAATTGAAGCCTTAGC TTAGTCCTCCCTTGTGTACTTGCATTGCATGCACTTGTACTTTCTTTTGTTTTGTTTTTCTTTTTGTCTTGTAACTTGGG TCTAGCAAGCCTTTTTCTTGTAATTCAACTACAAAATTGCAC
CDS sequence (LotjaGi4g1v0344900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACCTCTAAAACCTCCTTCAAAGGATCATCATATGATCCAAGTCAAACCCAAATGTGCCTATCTCTTCTTCAAAG AAACACTTCTCCTTGTGGTGAGAGAAGAGGTAAGAGGAAGCAAGCAGAACCAGGAAGGTTTCTTGGTGTTAGGAGAAGAC CATGGGGTCGCTATGCCGCTGAAATCAGAGACCCTTCAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAA GAAGCTGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACTCTGACAT CAATTTCCAACCTCTTATAGCCACTACTCCTATGGATGATGTTAGAGTTCAAGCTCTCTTGCCAGCTTCAGAGCTACTCA CTCACACTACTCAGAGAAAACAACAAATAACCAATCAGAATAGCATGTCTCAGCTTGACAATGCTCACAGTGAAAAAAAG TCAAACACCATATGTGCTGAAACTTCATATGGGTCAGTTCAGGATGAAAATTTCTTCTTTTCCAATGATTCTAATAACTC TGGTTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTACTTCAAGTGATCAAAAGATTAGCACAATTTCTATGG AGAGTGCTAATCAGCTAAATGTTGGCATGGCTTCATTCTCTGAAGAAGCCACAAAAATGCCACCACGTTCTAGCTTTTCA GAGTTTTCTTATCCAAGTGAAGGTTTCTGGGAGGATCAGCATTCATGGGATTGGAGTTCCAATGAACTTTCAGCTATATT TAACAACCCATTAAGGGTTGAAGATAGGTGCATGGATACATTATATGAGTATCAAATCACTGACTGTCCAAGCTATGGGC TAATGAACCAGATTGCTTCTTCATCAGCAACCTGTTCTCCATCATTTCCACCCTTTGGTGGGGATGTAGACTTGGGATAC CCACTCTTCTGA
Protein sequence (LotjaGi4g1v0344900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTSKTSFKGSSYDPSQTQMCLSLLQRNTSPCGERRGKRKQAEPGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAQ EAALAYDRAALSMKGSQARTNFVYSDINFQPLIATTPMDDVRVQALLPASELLTHTTQRKQQITNQNSMSQLDNAHSEKK SNTICAETSYGSVQDENFFFSNDSNNSGYLECIVPDNCFRPTSSDQKISTISMESANQLNVGMASFSEEATKMPPRSSFS EFSYPSEGFWEDQHSWDWSSNELSAIFNNPLRVEDRCMDTLYEYQITDCPSYGLMNQIASSSATCSPSFPPFGGDVDLGY PLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 323 | 323 | 9.3E-120 | – | |
| PANTHER | 1 | 323 | 323 | 9.3E-120 | – | |
| Gene3D | 46 | 104 | 59 | 5.7E-28 | ||
| CDD | 46 | 102 | 57 | 1.89133E-29 | ||
| ProSiteProfiles | 46 | 103 | 58 | 20.56 | ||
| SMART | 46 | 109 | 64 | 6.0E-32 | ||
| PRINTS | 47 | 58 | 12 | 1.1E-7 | ||
| SUPERFAMILY | 47 | 104 | 58 | 3.4E-20 | ||
| Pfam | 49 | 95 | 47 | 4.1E-11 | ||
| PRINTS | 69 | 85 | 17 | 1.1E-7 | ||
| MobiDBLite | 137 | 160 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0344900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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