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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0346200 |
| Transcript ID | LotjaGi4g1v0346200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box-like protein; TAIR: AT4G15563.7 F-box-like protein; Swiss-Prot: sp|Q4R327|FBX24_MACFA F-box only protein 24; TrEMBL-Plants: tr|C6TCL9|C6TCL9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0346200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72561041..72566303) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAATTATATATTGATTTCATTTGATTGTCCAAAAAAAATCCCATTATTGAGAAAATTAAGATCAGAAATGACATGGG TTTGTTTCGTGGCGCCATGTGATTGAAACTGCAAAGGGACAAGAAACAAGACAAGAGAAGTCTTAGAATTCCTTTGATTT TCAATCGCAATTGCAATTGCAAACCATGTGCAAAGATAAGCAGCTGGATCCTGTTCCGGTACTCGCATCACTTCCTCAAG ATGTTACCTTCAAGATTACTTCACTTCTTCAGGTTCGATTTTCAATTTGCATGGCGTGAGAAAGATTCGATTTCATTTGT TTATCTTGACCCTGTTGATTTGTTTTCCGTTTTCCTAGGTGCGGGATTTGTGTGCCTTAGGTTGTTGTTCCAGATTCTGC AGAGACCTTTGCTTCTCTGATTGCATTTGGGAGTCTCTTGTCAGAACCAGATGGCCTTTACTCGCACTCGCACCATCATC ATCGTCTTCGTCTTCTTCTTCTACTTCTGCTACCTCTCCCAATCCCAAGGTATATTTTCCTGTTTTTTTAGGAATACCCA GTTTGTTATTTAACCAAAGTTTGGTTCTTTTTCCCCTATTGCCTTTGGGTAATCATTCATAGTATACCATGTTTCGTTCA GTTATTCACCACTTAGGATCGCGTAAGTTGAGTGTATGTTTGGAAATCATTCTACAATTGATTATAAAACCAAAATTGAT TCTTGAGAGAAGCTTATTGTGTGCGTGTTTGGATCAGGGTTGTCAGAATTGATTTTGGATAGAATTGATTTTGCTAAAAT TAATTATTGTAACTAAAAGTGAGTTGAAACTTGAAAGTGAAGTGATTTATGTTTTGATACTTTTATGGGAAAAGTGATTT CTATAGGATAATGTTGTGAAATCCAGTTATGAAAGATTATGTCAACTGCAGGAGGAAGGAGCTACTCTCTATAGCTTCAC ATTATTGAATTTTTGGTTGGAAATCAATTCTCTAAGTGGATTGCTAAATATCTATTTAACCACCTAAAAGTGATTGTGGT CCATGAGAATTGATTCTAAGGCTCCTAAACATGGAGACACACCAAGTCTGGATGTCAGAATTAACGATAAAATGAGATGA CTCAAACATGCTATGAATTACAGATTGTGCACAAAAGAGATTCTGTTGCATTTTTTAAAACTTGCTATCTAACCCTAAAC TATGTTTTAGGCTTAGAGTTAAGGAAAGTACTTGGTCCCTTGTTCTTACATTATCGTTATTTTGGTGGGGTGGCAGTATG TGTGTGTGTGTGTGTGTGTGTACATCATTATCTTTTTTGGGCAGATTTGAGTAGTGTTACTGTTATTGTGTTATGTTGTG AATAAATGTTTGGATTTTGGATTACAGAAGTGGAGAAAGTTTTACTTCGAGAGGCACGTCGAGTTGGGACTTAGGGCAAG GACAGTTGAGATGTTTCTGAAAGCTTGCTCACCTTCTGAATCACTTGAGGTTGGGGACTATCTGAAAGCCGTTGATACCT TGGTTGGTTTGAGGTTTGGTTTTGAAGACATACAGAGGTACCTGTTCAACCCTAAAATGAATGTGCTGATTAACTTGGTT GGACTGCATTACTGCCTCTCAAGCCTTGGCATAAGGGTATTTCCATCCTCTTCCACCCTATTTTCATTTACTTTGTTTGC ATTTTAACTAATCAAACTCCTCTTTGAGATCCCACATATTTTTTTAAAAGGTAATTGCTTCGTCATAGTTCAACTTTGTG CTGCTTGATGGCAAATGGGAGAACCACAATGCACAAGCTCTACCAAACATTATCTTTGGCATATTGTCAATTATGCATGC GCTTCCGTTAGATTTATTTTGTTTGCTTCAGGGCTGCAGCTAGTAGAAAGAAAAGATCATGACCAGTTGAAATATGGTTT CACACTTTCCAACTGAATCCAAAACATCTGCTTCATTTCATGTTCTCTGCTAACCATTTGTGCAGAACTTCTTTTCCTTG CCGGTATTTAATTAAGAAAGTCACTTGTCTTTTTCCTTGCTTCAACTTTTCCATTGTTATTTATGTTCTTCTGTCCAACA AATAAAATATCTCTTGGTCAGTTTATGTACATCGTAAGGTAATTGTTGTGGTGACCTTAAAACAAATATGATTAAGAAAA AAGATACTTTTAACACATGCTCAAAAGTACATTGTTTCTTGTAAGTAAGAGATGGTGCCGTCTAAAAGTGCAATCTTTTG TCATTTGTCACTCTGTTCCCAAATTTGCACCTTTAGAAGCTTCAGAAATAAGTTGCATACATTTATTCTTTACCTTTGAA TTTCATTGCTTGACTTTTTGTTTGAGGACAACAACTACCAAGCCTTGACTTTTTTAGAGAAATATGAGAAATTAAGAGGA TAAAGTTGAACCATCATCACATATTTTCCCTCTTCTCAACGAGGCTTTTACATATAAATTGCTGTATGAAACAGTGCAGT GCATCCCATATTTAATTATATAGATACCTGCCTCATATTTATGTGGATTTCGATCTTGGAATTAAATAACCAAATGGATC AAGTTACATGGATGCTTGAACATGGCTGATCTATGTTGTTTTTCTGATCAAGTTACACTTAAGCCTTGATGATGGAATGC ACATGTACATTAAAGTATTAAGCTAGACCAGACTGATATGTATTTGATCTGCAAGTGTCTTTGTTGGCAGGGTGAAAATC TTTTAGAAGTCCTTCGCACTTGTGAGATCTCAGATCGGCGCGTGGTTGTCAAGTGGTGGAAACTTGGTAGATGGTTACAT GGCTACCGTATGAGGGATGAGTTTCATTCTCGTTGGGTTTCTTTGGCTGATTTAGCAACACAAGATGATGGGAACGTTTT GGGGGTGCTTCGCCGAGGTACTATTCACGAGGTTTTACGTGTTCAGATCTCTGCTGTTGGTCATACCACAACATCTTGGT CCTACCAGCTTACCCACAGATTGCAATAGCCATAGGGAGATCATATCAACTACTAATGCTGATGAGAAATTCTATTCCCA CAATTGTTTTCTACTCATTCTTATGAAAATTAGTTGTAGGAATAGAATGACTCCATGCTAATATCCAAGTATTACTGTGT GTATAAATAATTCTTGTTTTTTAAATTCCTTTGGCAATAATACATGTATAGTATGTATCATCAAAGACTGGAAGAATAAC TAGTTATAATGCTTCTTTTCTTCTTCACATGGCATATGTATAAAGTCCATATCCTCATTGTCCATAACAGAGAATTCACT GAGTTGTTTTATGGAAGCACTTCATACAATGAAAAGAAGGCATGAAGGTTTTGGCAATGTTACTTGTTAGTCTGATCTAG TACTCTTTTTTTCTTTCTATATACGCTTCCACCACAAATTGACCTGTCATGTTAATTATTCTCAAGTTCATAGCCATTAC CTGCTAAAATCAATTATGGAAAGAATATTCTGTGAGTAGTTTCTGAATTACAAAATCGATTCTAAGGTAAAAGAAGTTGA TCCGAACATGTAGTAGACTAGTAGGTGGAGAGGCTGGTTTGGACAATCATTAGTTCTTATTTAAACGTTTCATTGGTGAA TTATTTATTCTATTAAAGTTTTGCAGGATAATTGCAAATCATGTATGACATAAATAGAATGTAGAATACAACCAAAGGTC CTTCATGGAAAACACACATTTACAAAAATAATCATCCCCCGCATTCGGAAACACACTAGTCATCTACACACTATAACAAA TACTTAAAGACACTGACTATATTTGTAAACAATGTTACTAAGAAATGAATGCATGAATGTTCAGAGTGATCCTTGTTCCT TCCACCTATTGGGGAACTCGACTATGAAGACTGAAAGCAGAAAGCCAGACGAGCAAGACCGACACAATGCTTCCAACCAA ACCCACTCCAATGGAGCCACCAACATGCCTACAGTACTTATCATAGACGTTGCAAATTTTATGCCAACCCACATGGTTGT TTCCCTTCAAGCCCACATATGCCACACCCCCAGCTGTGCCTGTTGCTGAAGCTAATATCCCCAATATCAGCTGCGAAGAA GAACAGTAATTAAGTACATGTTTGAAAATTCTACTATATTTGATTCTAAAGTCAAAATCCATTACGGATAGAAGCTTCTG TACGTAGCTTCTGAGTGCCATAATTGATTATGAGAAAAACAAGTTTATCAAAACATGCATATATAAGTTGCTTATTTGTC ATGTTTGATGTGTAAAGCAAGTAAATTGAGAAGAGTAGAGAGGTTAATTGATTCATTACCGCATCCCAGAACAGAAAATA GAGGAGGAACTTGGTTTTAAGGGCAGGTTTTCGGATGACAGAGAGTGATGCAAGAGCTGTGAGGATACTATAGAGTCCAG AAACGGAGAATGCAGCCACAAAATATCTGTTTGCATATCATATTACATGTCACACAGTTATAAGACTTTGTTGCTTAAAA AAATAAAGAGGATTATAATAAACATAGTAAATGAATCTACTAAAGATTTGAAAAACTGTGAACTTACATAAAAGCTGGTG AGTATCTGAACTTGGCTGGCCTAGGCAAAGGTACATATTCAGTTTGGTTACTAGTAACCATGACCACAACTGCAACCAGT GATGATGCAAACAAGAGAAACCTTAGGATCAAATCAAAGTGAAAGTAATCAACACCAGCAGCAGGAGCTGGAATTGGAGT TGAAGATAATCTGTGCTCAGGGTCCTCTGTCTTGTCCCTAGAAGCCATGTTTCAATTTTGCTCTCAAAATTAAGCTAGAT TGATTGTTAGCTTGGTCTTAATGCAAGGTAGTAATAGCTAGAATTTGAAAACACAGTGGTGAAGGATAAGGGTAGTTGAA CAATCACATATATATAGATGGATTTGGACACTTCATGGGGAGAGCCAAATGAACGGGAAAGGTGTAAAAACCAAATGGTT GAAGTTTCCTGCACGTTTGAACACTTGCTTGTTAACTAGTTGGTGTGTATCAATTTGATGAGCCATACAGCTAGTAGTCT ATATTTAAGTTTAAGACAAGTATCCTCCACCGAAAATAATATTATTCAAGTCGAAAACATTCACATTCCGGTGAGACCAG CTCTTTGAGAGAGATTTAATTTTATACACAAAATTTAAACATGAGATATTACTTAAGAAAAATTAAACATGTGTCACTTA AACCAACTGCATCAATATACAAGCTTACATGTTTTGTTAGCATATTTGATATGAACAATTCTC
CDS sequence (LotjaGi4g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAAAGATAAGCAGCTGGATCCTGTTCCGGTACTCGCATCACTTCCTCAAGATGTTACCTTCAAGATTACTTCACT TCTTCAGGTGCGGGATTTGTGTGCCTTAGGTTGTTGTTCCAGATTCTGCAGAGACCTTTGCTTCTCTGATTGCATTTGGG AGTCTCTTGTCAGAACCAGATGGCCTTTACTCGCACTCGCACCATCATCATCGTCTTCGTCTTCTTCTTCTACTTCTGCT ACCTCTCCCAATCCCAAGAAGTGGAGAAAGTTTTACTTCGAGAGGCACGTCGAGTTGGGACTTAGGGCAAGGACAGTTGA GATGTTTCTGAAAGCTTGCTCACCTTCTGAATCACTTGAGGTTGGGGACTATCTGAAAGCCGTTGATACCTTGGTTGGTT TGAGGTTTGGTTTTGAAGACATACAGAGGTACCTGTTCAACCCTAAAATGAATGTGCTGATTAACTTGGTTGGACTGCAT TACTGCCTCTCAAGCCTTGGCATAAGGGGTGAAAATCTTTTAGAAGTCCTTCGCACTTGTGAGATCTCAGATCGGCGCGT GGTTGTCAAGTGGTGGAAACTTGGTAGATGGTTACATGGCTACCGTATGAGGGATGAGTTTCATTCTCGTTGGGTTTCTT TGGCTGATTTAGCAACACAAGATGATGGGAACGTTTTGGGGGTGCTTCGCCGAGGTACTATTCACGAGGTTTTACGTGTT CAGATCTCTGCTGTTGGTCATACCACAACATCTTGGTCCTACCAGCTTACCCACAGATTGCAATAG
Protein sequence (LotjaGi4g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCKDKQLDPVPVLASLPQDVTFKITSLLQVRDLCALGCCSRFCRDLCFSDCIWESLVRTRWPLLALAPSSSSSSSSSTSA TSPNPKKWRKFYFERHVELGLRARTVEMFLKACSPSESLEVGDYLKAVDTLVGLRFGFEDIQRYLFNPKMNVLINLVGLH YCLSSLGIRGENLLEVLRTCEISDRRVVVKWWKLGRWLHGYRMRDEFHSRWVSLADLATQDDGNVLGVLRRGTIHEVLRV QISAVGHTTTSWSYQLTHRLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 99 | 96 | 2.7E-10 | – | |
| SUPERFAMILY | 7 | 96 | 90 | 1.44E-13 | ||
| ProSiteProfiles | 10 | 56 | 47 | 8.676 | ||
| PANTHER | 13 | 258 | 246 | 7.0E-76 | – | |
| PANTHER | 13 | 258 | 246 | 7.0E-76 | ||
| SMART | 16 | 56 | 41 | 0.0036 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. |
Expression pattern of LotjaGi4g1v0346200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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