Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0347300 |
| Transcript ID | LotjaGi4g1v0347300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein, putative; TAIR: AT3G21490.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|A0JPW5|HIP19_ARATH Heavy metal-associated isoprenylated plant protein 19; TrEMBL-Plants: tr|V7C7S1|V7C7S1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0347300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72639802..72640487) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAATGGGGAAGGACAAAAAAGCAGAACCAAACAAATTAATAGTTGTGGAATTCAAGGTTTCACTGCACTGCAACGCT TGTGAGAGAACCGTTGCCAAAGCCCTCTCCAAGTGCAAAGGTACATAATTTTCTCTCATTTTTGGCATCCTGTGTAATTA TATACAGAAATTAATTTGTGTATCTATAATTTTTAATTAGGAGTGGAAAAGTTCATCACAGACATGAACAAACATCAGGT TGTGGTGACCGGTCGGATTGATCCGGAAAAAGTACTGAAGAAATTGAAGAAGAAGACAGGGAAGAAAGTGGAGATTTTGT CTAAAAAGGATGATGAGACAAACGATGAATCTCATGAATCGAATAAACTTGTTATAATGCAACAGTTTAGGCCTGAAAAT GATCAATATTGTTGTATTAAGAATGAAGACTTGATGCTGTTCAGCGATGAGAACCCAAATGCATGTGTCCTAATGTAGAT TTTAACTAGTAATTAGTTAATTGGAGATTTCTGTTTGTTAGTGTTATTTCAATTACATGATGTATTTGTAGAATCACCAT ATTCGATTCAATTCTAAAAGTCATACACATAGTAAAGTAAATTAATCCTAGTATGGGAATCGTTTCAGCAGCACAAGACA AAAAAAAAAATTCTTCTATTTGATTACTATTTTTCTGAGTTGTTTA
CDS sequence (LotjaGi4g1v0347300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGGACAAAAAAGCAGAACCAAACAAATTAATAGTTGTGGAATTCAAGGTTTCACTGCACTGCAACGCTTGTGA GAGAACCGTTGCCAAAGCCCTCTCCAAGTGCAAAGGAGTGGAAAAGTTCATCACAGACATGAACAAACATCAGGTTGTGG TGACCGGTCGGATTGATCCGGAAAAAGTACTGAAGAAATTGAAGAAGAAGACAGGGAAGAAAGTGGAGATTTTGTCTAAA AAGGATGATGAGACAAACGATGAATCTCATGAATCGAATAAACTTGTTATAATGCAACAGTTTAGGCCTGAAAATGATCA ATATTGTTGTATTAAGAATGAAGACTTGATGCTGTTCAGCGATGAGAACCCAAATGCATGTGTCCTAATGTAG
Protein sequence (LotjaGi4g1v0347300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKDKKAEPNKLIVVEFKVSLHCNACERTVAKALSKCKGVEKFITDMNKHQVVVTGRIDPEKVLKKLKKKTGKKVEILSK KDDETNDESHESNKLVIMQQFRPENDQYCCIKNEDLMLFSDENPNACVLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 129 | 127 | 4.0E-38 | – | |
| PANTHER | 3 | 129 | 127 | 4.0E-38 | – | |
| SUPERFAMILY | 9 | 79 | 71 | 7.85E-13 | ||
| Gene3D | 12 | 78 | 67 | 3.1E-17 | – | |
| CDD | 16 | 56 | 41 | 4.31115E-5 | ||
| Pfam | 17 | 73 | 57 | 2.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0347300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…