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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0348200 |
| Transcript ID | LotjaGi4g1v0348200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|I1MRC4|I1MRC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72715685..72720795) extracted from Lotus japonicus Gifu genome v1.2.
CATATTCACTGATTATAATACTGACCCTTATGCAGAGTTCAACATATATGGAGACCCTTTTGCTGCATACCAGGTCATCA GACATTTTGATATGCATAACATTAATTCCATTTATTGATATCTAAAGAACGAAATATACTTTTAACTTTCATGGAAATAA ACAATAATCATGTTGTTTACCGTAGCCCTTAATATCATGAGCTGACAGCTAGCAGTATTATATAAAACCATTCATGTGTT TTCAGCTTAACAGTTTAAGCTTTTTAAATAGTTGGTTCATGACAACATATTTCTGTGGGTAGTTATGTTAGTGACAAAAA GGTAAATAAATCTCTTTTTTCTAGGTGATTCATTCTGGAATTCCTGTCACCCTTGTTCCTCTTGATGCAACAAATACAAT CCCCATCAATGAAGAATTCTTTGATGCATTTGAAAAGACTCAAGACACATATGAGGCACAATATTGTTTCAAATCATTGA AAATGGCTCGTGATACATGGTTTGACAACCAATTCTATTCGGTAATCTTTTAGTGAATTCAATTTATGCATGCTTATTGT TTTATGTTATTAACATGTAATTTTTTTATGAATAGGAATGAACTAATATTCACAATGAATTAAATCATTATTTTGCAGAG TTATTTTATGTGGGACTCTTTTGCAGCTGGTATAGCTGCTTCAACTATGAGTAAATCCAATAACCCCGAAGGAGAAAATG AATTTGCTGACATGGAGTATATGAACATAACTGTTGTTACTTCAAACAAGCCTTATGGGATATCTGATGGCTCAAATCCA TTCTTTGATGGCCTAAAAGTTCCCAAGTTCAATTTAGAGAAAGGTGGGGTTCATAGCGGTCATATTCAACAAGGACTTAG AGATCCACTTTGCTTTGTAAAGAATGGGAAAGGAAGATGCCAGGTAGTTGCTTTTCTATGTAGGTTTCAACTTTAATAAC ATGTTTGGTCCCACAGTGAAAACCTCTAGAATCAATTCTCAGTACAAGCTACAAGTCTTAGCTTATAAGTAAACGTGTTT TGAATTCTGTGCAAATCATGAAACACTGCACCAATTTGTCAAACATGCATACATATTGTTAATGTTCATGTGTTGAAACA TGTTCTATAGGATGGTTATACAGCAGAGACACATGGTCCAGACTCGGTTAGGGTACTTGTTGCCACAAAAGCAAAGCCTA ATCAGGATACTGGAAGCTCACTTGACAGAGAATATTTCAAAAGCTTCTTGAGTGTATGTCCACATTTTTGATATATAGAT ATTGTTCTAATTTCTTCATTCAATCATTCTGTTTTATTTACATGAGTTTATAAAGAAATTACTAACAAGTAACAACTAAA TTCTTTGTGCTGCAATTGTTATTGGATTCTAAAGGCTTTCACTGTTGTTGTTGTTTTGTTTTTTTGTCGTCCAAAGGTTC TAAACAACCCGCAATATGCTGGGAAGTTCAACTTCACCACACAGTTTCCTTACTACAAAGAAGTAACTTACAAGCCAGAT TTTCATAACAAAACACTTGGGAAACCTGTTGTGTTTGACATGGACATGAGTGCAGGAGATTTTCTTGCTCTATTTTACCT CCTTAAAGTTCCTGTTGAAGTAATCAATCTTAAGGTAATATGTTTTTCCATTCGTGAGTGTTTCATAAATGTGTGTTTGA ATACCAATTGAGTGCAATCTGAATGAACTTTTATCCCAATTCATAAGGATTTCGCTCACTTTTTAGTTTCCAGTGCTAAC AAGTATCCAAACGTAGTTTTAGTTCTCCATTAAACCAAATATTGACACCAAGATATGAAAAGGCGTTCAAATGAGAAACC CTAGATGTTTTAGGTCAACTAAGAATTTCTACTTTTGATTTGATAACTTAAGTTGCTTGAAACTTACTTGTACTTACGGG CCTAAGTTTTTTTCTGTTGAATTATTTGTTTTTGAACCACAATTTGGAGAGAAGTAACACCTTTACTTTGTGCTTCTTGT ACCTTATTTTTCAGGCAATCATTGTGAGTCCTACTGGATGGGCAAATGCAGCTACAATAGATATAATCTATGACTTACTG CACATGATGGGTCGTGATGATATCCCAGTTGGTCTCGGAGATGTTTTTGCAGTGAATCAATCTGATCCAATATTATCAGG TGTTGGGGATTGCAAGTATGTTAGATCCATTCCACATGGAAGTGGGGGGCTTATAGACTCTGACACACTTTATGGTCTTG CTCGCGATCTACCACACAGCCCAAGAAGGTTCTTTCCTGTTATTTACATGGCCTAGTTAGCATTGCTCATCAATGTTATG ATGCATCATAAATTATTGAAATCATATTGATTATACGCATGTTTGGAAACTCTTCTATAATTTATTTTGAAGACAATCAA TTCTAAGGAGAAGCTTATGTGAGTAGCTTCTAATGTTTCCTACCATGATTGGACTAACACAATAGGAATTATTTCAGGTA CACAGCAGAAAACTCTCTGAAGTTCGGGGCTCCTCGAGATACATATCACCCTGAACTCAGGCAACCACGAGCTATGGAAG TTTGGGAGTCTATTTGGCAAACAACTAAACCAGGGTCAGAGATTACAGTATTAACTAATGGACCCTTGACTAATTTGGCA AAGGTTGTATCAGTAGAAAACATAAGATCCAGAATAAAGGTCAGTTATGGCGCATATATTTGAAATAGCTATATATATCA GCAATAACAATCAACTGCTATGAAAGTGGACTTCAGAGACCACAGTATAGCTAGAAAAACTTATTGTCATTTTTGTTATA CAAGAAAAAAATAAATTGAATATTCATGATTTTTTTGCATTAAACATTCTGCTAGTGCAGAAATAAAGTTCAGATTGTTA TAATTTGAGGAGATAACTGTTCCTAAATGTTGCAGGAGGTTTATGTAGTTGGGGGACACATCAGTGAAAATGTCAATGAT AAAGGAAACATCTTTTCAGTTCCTTCCAACCAATATGCAGAATTCAACATATTCTTAGATCCTTTGGCTGCCAAGGCAGT GTTCGAATCTGAAGTTAACATCACATTGATTCCGCTTAGTGCCCAGCGTAAAGTAAGTTCATTTTCAACTGCCATAGATT CTTTAAAAAGGGCTAAGAAAACTCCAGAGGCTGTGTTTTCCCAGGGTCTGCTGTCATGGCTATACCACTTGAAGCAAATC AATGATAAGTATCTTCATATGGTATGTACATGAGTTCCTATCCACAAAAATAATTTATTTTCTCTAGGCCAATATTCTTT CACATCATAAAAACTTTATAAGCATGATGGTGTTCAGAAATTGCATTTGGCAGAAGCTCATCAGGCTGTCTATATTGTTT CTGTTATTTTATAATAGTATGTTTGGGTTAAATTATTTTTTCATAGCACTCAGAAGCTACTCATAGAAGCTTCTTTCAAT AATTGATTTTGACTTTAGAGTCATTGGTAGAAAGATGTAATTAAGCCCTTATTGTTTGCACATGCAGGACACATTCTTGG GGGAAATTCTAGGTGCAGTTACCTTGGGCGATACTTCAACTAATCTTGATCCAAATTTTGAGGTCAAGCCTATTAAAGTC TTAGCTGATGGCGTTGAATCCACTGATGGAACAATTGTGGTGGATGGGAGACATGGAAAATTAGTTAGAATTTTAAGAGG TGTAAATGCCATGGCTTATTATAATTTGTATGCAGACAAGCTTGGCAATCATAATCAAACAGCTAAGGTTGGCAGCTTTA AAGAACAAACAAGAAAATGGCGTTATGCTCATTTGTAATTTCCTTATTCTCTGCTCGGCAGCAATAATATATCTTTTGTT ATAATTTGTATTTTCTAATAATTACTCCATGCTTTGCAACCAATACAAGGAAACCAGTGGAAAGTGGAAACCCTGTTGCC CTATCATGAAATATCATTTATTAATTCAAATTCACATGCTTTTTCATGTTCAAAAAATGTTTTATTACACACTAATAAAC ATGTAATATACAGTGGAATACAAACTCGGAATAAAGCTTCTCCTAGGCACAATGTCAATGGACATTGCGAGTAATCAACC CCTCAAATATATTGTACAGGTCCTTGTTTTCTGGTCCAAAAATTTCATCAGCTTTCTGCAGCGTCACCTGCAATTTCGCA CAAACAGAGCTTATAGGTGCGTCAATTGACGAAACAGGGGAGGAGTGGGAGAGGATCAGAGGAAGCATGAGAGAGGAAAC GAGGCAGGAGCATGAGGAATTACCTCTCTTGTTTGTTTATGGGAATTCAGCTCCTTAACATTAGCCAAGAATGCACCGAA CTGCTCGTAAGACAACCGGTTCCTGATAAAAACCAACAGGAGATTAAATAAAGACCCCTGACTACTAAGCAGTAGGATAG TTCATCCAGTGATAAAAGATTCATTTCTTCCTGTCTAATCTGATCCAGTTTCCATGAAGGTCCTTCAAAATTATGGAAAC TACAACATGCATGTGGGCACATGTTTATGTAATTATGTGCTTAAATTAAGTCAACTGAGGTTGCCATTGTTTGGTAAAAC TATAAGTTTCTCAACTAGGTTCCATAATTTCAAAGACAAGGGCCCTCACCTGACTTGGCGAAAGAACTCCTTTCCGTCCA CCCGTGTTCGTCCTATGACACCCAAGTAAGAAACAATAAAATGAGAGAAAAAGTCATGACCTCAGCATGGCTGTAATGCT GGAAATACTGAAATATTAAGTAAGCATCTGATTCTTCATATGCATGCAAGATCCAAGAAAATAGTTCACAACAGAGTGAC TTAATGAAAACATATCGAGATGAAATCTGTTTGCACATTTGCAATGGCAACATAGTTAAAAGAACTCACCAGTTTGTGAT CCTGCTCCGGAGTCAGAGCTTGACATCGAGGAAAACACTGAAGTCCTATCATCATGCATGCCTCTTGAGGTTGCAAAGGA AATTGAATGCCGCCTTGGAGACACAGGTTTAGATGTTCTTGTGGGAGATACTGATGCAGACAGGCTGGGAGGAGAACCAG GGGGAGTGAGCCGAGGGGTGGTAGATTGGGATGCTAAGAGGAGACTATATGGTACTCTAGGTCTTATGGCT
CDS sequence (LotjaGi4g1v0348200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTGATACATGGTTTGACAACCAATTCTATTCGAGTTATTTTATGTGGGACTCTTTTGCAGCTGGTATAGCTGC TTCAACTATGAGTAAATCCAATAACCCCGAAGGAGAAAATGAATTTGCTGACATGGAGTATATGAACATAACTGTTGTTA CTTCAAACAAGCCTTATGGGATATCTGATGGCTCAAATCCATTCTTTGATGGCCTAAAAGTTCCCAAGTTCAATTTAGAG AAAGGTGGGGTTCATAGCGGTCATATTCAACAAGGACTTAGAGATCCACTTTGCTTTGTAAAGAATGGGAAAGGAAGATG CCAGGATGGTTATACAGCAGAGACACATGGTCCAGACTCGGTTAGGGTACTTGTTGCCACAAAAGCAAAGCCTAATCAGG ATACTGGAAGCTCACTTGACAGAGAATATTTCAAAAGCTTCTTGAGTGTTCTAAACAACCCGCAATATGCTGGGAAGTTC AACTTCACCACACAGTTTCCTTACTACAAAGAAGTAACTTACAAGCCAGATTTTCATAACAAAACACTTGGGAAACCTGT TGTGTTTGACATGGACATGAGTGCAGGAGATTTTCTTGCTCTATTTTACCTCCTTAAAGTTCCTGTTGAAGTAATCAATC TTAAGGCAATCATTGTGAGTCCTACTGGATGGGCAAATGCAGCTACAATAGATATAATCTATGACTTACTGCACATGATG GGTCGTGATGATATCCCAGTTGGTCTCGGAGATGTTTTTGCAGTGAATCAATCTGATCCAATATTATCAGGTGTTGGGGA TTGCAAGTATGTTAGATCCATTCCACATGGAAGTGGGGGGCTTATAGACTCTGACACACTTTATGGTCTTGCTCGCGATC TACCACACAGCCCAAGAAGGTACACAGCAGAAAACTCTCTGAAGTTCGGGGCTCCTCGAGATACATATCACCCTGAACTC AGGCAACCACGAGCTATGGAAGTTTGGGAGTCTATTTGGCAAACAACTAAACCAGGGTCAGAGATTACAGTATTAACTAA TGGACCCTTGACTAATTTGGCAAAGGTTGTATCAGTAGAAAACATAAGATCCAGAATAAAGGAGGTTTATGTAGTTGGGG GACACATCAGTGAAAATGTCAATGATAAAGGAAACATCTTTTCAGTTCCTTCCAACCAATATGCAGAATTCAACATATTC TTAGATCCTTTGGCTGCCAAGGCAGTGTTCGAATCTGAAGTTAACATCACATTGATTCCGCTTAGTGCCCAGCGTAAAGT AAGTTCATTTTCAACTGCCATAGATTCTTTAAAAAGGGCTAAGAAAACTCCAGAGGCTGTGTTTTCCCAGGGTCTGCTGT CATGGCTATACCACTTGAAGCAAATCAATGATAAGTATCTTCATATGGACACATTCTTGGGGGAAATTCTAGGTGCAGTT ACCTTGGGCGATACTTCAACTAATCTTGATCCAAATTTTGAGGTCAAGCCTATTAAAGTCTTAGCTGATGGCGTTGAATC CACTGATGGAACAATTGTGGTGGATGGGAGACATGGAAAATTAGTTAGAATTTTAAGAGGTGTAAATGCCATGGCTTATT ATAATTTGTATGCAGACAAGCTTGGCAATCATAATCAAACAGCTAAGGTTGGCAGCTTTAAAGAACAAACAAGAAAATGG CGTTATGCTCATTTGTAA
Protein sequence (LotjaGi4g1v0348200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARDTWFDNQFYSSYFMWDSFAAGIAASTMSKSNNPEGENEFADMEYMNITVVTSNKPYGISDGSNPFFDGLKVPKFNLE KGGVHSGHIQQGLRDPLCFVKNGKGRCQDGYTAETHGPDSVRVLVATKAKPNQDTGSSLDREYFKSFLSVLNNPQYAGKF NFTTQFPYYKEVTYKPDFHNKTLGKPVVFDMDMSAGDFLALFYLLKVPVEVINLKAIIVSPTGWANAATIDIIYDLLHMM GRDDIPVGLGDVFAVNQSDPILSGVGDCKYVRSIPHGSGGLIDSDTLYGLARDLPHSPRRYTAENSLKFGAPRDTYHPEL RQPRAMEVWESIWQTTKPGSEITVLTNGPLTNLAKVVSVENIRSRIKEVYVVGGHISENVNDKGNIFSVPSNQYAEFNIF LDPLAAKAVFESEVNITLIPLSAQRKVSSFSTAIDSLKRAKKTPEAVFSQGLLSWLYHLKQINDKYLHMDTFLGEILGAV TLGDTSTNLDPNFEVKPIKVLADGVESTDGTIVVDGRHGKLVRILRGVNAMAYYNLYADKLGNHNQTAKVGSFKEQTRKW RYAHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 564 | 564 | 0.0 | – | |
| PANTHER | 1 | 564 | 564 | 0.0 | – | |
| Gene3D | 183 | 542 | 360 | 4.7E-47 | ||
| Pfam | 185 | 534 | 350 | 3.4E-40 | ||
| SUPERFAMILY | 185 | 541 | 357 | 1.7E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0348200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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