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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001910
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.177s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4714110.1
n.a. Inosine-uridine preferring ribonucleoside hydrolase [Medicago truncatula] gi|357510999|ref|XP_003625788.1| chr1 56174776 56177780 -
4 domain predictions
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Lj4g3v2374990.1
n.a. Inosine-uridine preferring nucleoside hydrolase family protein isoform 2 [Theobroma cacao] gi|508714449|gb|EOY06346.1| chr4 32824325 32841767 +
4 domain predictions
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Lj4g3v2374990.2
n.a. Pyrimidine-specific ribonucleoside hydrolase rihB [Medicago truncatula] gi|357478551|ref|XP_003609561.1| chr4 32824325 32833928 +
4 domain predictions
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Lj6g3v1915990.1
n.a. Pyrimidine-specific ribonucleoside hydrolase rihA [Medicago truncatula] gi|357447543|ref|XP_003594047.1| chr6 21595489 21609086 -
4 domain predictions
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Lj6g3v1915990.2
n.a. Inosine-uridine preferring nucleoside hydrolase family protein isoform 2 [Theobroma cacao] gi|508714449|gb|EOY06346.1| chr6 21595489 21608251 -
4 domain predictions
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Lj6g3v1915990.3
n.a. Inosine-uridine preferring nucleoside hydrolase family protein isoform 2 [Theobroma cacao] gi|508714449|gb|EOY06346.1| chr6 21595489 21608251 -
4 domain predictions
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LotjaGi1g1v0677200.1
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT2G36310.1 uridine-ribohydrolase 1; Swiss-Prot: sp|Q9SJM7|URH1_ARATH Uridine nucleosidase 1; TrEMBL-Plants: tr|A0A151TVS2|A0A151TVS2_CAJCA Uncharacterized protein C1683.06c family; Found in the gene: LotjaGi1g1v0677200 LjG1.1_chr1 124390329 124396192 +
2 domain predictions
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LotjaGi2g1v0062700.1
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT1G05620.2 uridine-ribohydrolase 2; Swiss-Prot: sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2; TrEMBL-Plants: tr|V7C4D6|V7C4D6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0062700 LjG1.1_chr2 14546060 14568766 -
2 domain predictions
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LotjaGi2g1v0062700.2
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT1G05620.1 uridine-ribohydrolase 2; Swiss-Prot: sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2; TrEMBL-Plants: tr|V7C4D6|V7C4D6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0062700 LjG1.1_chr2 14546060 14568766 -
2 domain predictions
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LotjaGi2g1v0062700.3
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT1G05620.1 uridine-ribohydrolase 2; Swiss-Prot: sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2; TrEMBL-Plants: tr|V7C4D6|V7C4D6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0062700 LjG1.1_chr2 14546060 14568766 -
2 domain predictions
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LotjaGi4g1v0348000.1
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|I1MRC4|I1MRC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348000 LjG1.1_chr4 72697609 72707553 +
2 domain predictions
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LotjaGi4g1v0348200.1
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|I1MRC4|I1MRC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348200 LjG1.1_chr4 72715685 72720795 +
2 domain predictions
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LotjaGi6g1v0304000.1
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|A0A1J7I5N9|A0A1J7I5N9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 LjG1.1_chr6 62138511 62144516 -
2 domain predictions
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LotjaGi6g1v0304000.2
n.a. Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|A0A1J7I5N9|A0A1J7I5N9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 LjG1.1_chr6 62139318 62144516 -
2 domain predictions
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