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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0350900 |
| Transcript ID | LotjaGi4g1v0350900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,3(4)-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|I3SLZ3|I3SLZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0350900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72947404..72951168) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTATAGATACCAAAAAATTTCATATTCATGATCCTTCTACATATAACGAAGCACCCGAAACCAAAGACTAGTCAAA CACAGACTCACAACACTCAGAACTCAGTGTGAAGCAAGCAGTATCAGCAATCATCATGTCAGGCCCTGAGTGCTGCTCAA ATCCACCAACCCTCAACCCCACCGGCGGAGCTGGCCACGTTGACAAGATCGCCGGCGTCAACGCCTATTTCTCCGGCTCC TCTCACTCCAACCTCGCCGTTCTTCTCCTCTCCGATGTTTTCGGTATCAAATTCTGCATTTCATTCTTTTCAGGAGCCTG TGCTATATATATAGATAATCTAGTAACAGTTGTTGACTTTTACCAAAACCTTCGTCTAATTTCATATGCTCAATTTTCCT TGCAGGATATGAAGCACCAAATTTAAGGTATGCCTACAAATACAGTTATTTGACTTATTTCCACTTTTCACTTGTTCATG TTTTCTTTGATCTCATGTATATATATATATATATCAATGAGAATTTATAATGGTTGCTCATGTTACTTGCAGTTTTCACT TACAAATTAAAATTTTCCAAGGTTTTGATGAACTATGCTGTTAATACAATTTGACTGTTTCATTCTGCTCTGTTTACAAA CTTCTCTGTCTCCACCTCTCTTGTATGTAATGTTTTTTGTTGACTTTGTTCTCTGTATTGAAGGAACCTTGCGGACAAAG TTGCAGCTGCTGGCTATTATGTGGTTGTTCCTGATCTCTTGAAGGGTGAGCCCTTGGACCTTGGGAACCCTGACAGGCCC TTTCCCGCTTGGATAAAAGATCATGGACCGGTTAGTTCTTATTTATAATACTTGCTTGTTCATGATTTTTCTCTTCTTGT ATAAATTAAAGAAACAATTTTTTGGTGGTATTAAAAATTGAAATTCAGTTTTTTGTTGCCTTATTGGAACTTTGAACATT CTGAGTGGGGGATGTATGGCTGGAATGCGATTTCTAGTTATGTGATGTAATTAACTAATTATCATTTCAACAGCTCAGCC ATTAGCCTGCTACCTTTGTATGTGGTTTTATTTGTAGATTGAGCATTAGGAAGGGTTAAATGTCAAATCAAATTTACAAA ATTGTGACGCTCTCTGATGCTTACCCGCTATATTAACAGGACAAAGGTTTTGAAGATACAAAGCCGATAATTGAAGCTTT AAAGAGTAAAGGTGTTTCAGCTATTGGGGCTGTTGGTTTTTGCTGGGGTGGTGAGTGCCTCTCATCTGCTTATTTTGTTT GCATTTCCCCTTCTTTAGCTTGTGTAACAGTTTCAGCTCCTTGCAGGTGTTGTACTTATTGGTTGGATTTAAAGTTTTAA ACATGATATTAATAATTGAACTAACACAATGTATTATATATTCCTTCTTTTTATCAGCTAAGGTTGTGGTTGAACTTGCG AAATCCAGACTGATCCAAGCTGCTGTGCTATTGCATCCATCGTTTGTCTCTTTGGATGATATCAAGGGTATAAATTTTCA ATGTTAAGATATATTTCCTTAATTTGCGATTTGTTTAGGAAATGTCTTTTAGCATCTTATGCGGGAAAAAGACTACTAAG ATTATGTTGGAGCTTCATGTTAGGAAAAACAGAAAAACTTGTCAATTGTCGTTTTCATCAATTTAAGCATTTTTGGCATA ATGTCACTTCCCATGCTAATGTGCAGTATCTAAAAATAAGGGTAAAGATTTGGAGTAGGTTTTTAACTTACTCCTGGAGT AAATGGAGTCCTCCTCTCTTTATATTTATATTCACTTATTTGAAGAAATATATTTTTCATTACTAATTTATTAACTGCTA AGGGACTACTTGCCTTTACTTTTTTCCTCTCTTTTCTTTTCTTTCCTTCTTGTAAAATACAAATTATATTGGAATCTACT GTTATATAACTATTTCTTTTTCATTTAAACTTAGTCAAAATGCTGCAGAGAGAAGTTCTGGTTGAAAGCTGTTTTAGTAT AACACAAAACAAAAAAATATGCTTATTTGATTAGATGTTAGATGATTAAATATTTGTCCAGAAGATGAGCAATACCTGCA GCAACAATGGAGTGTCTTTTGAATGACAGCTTTATATAGTTATACACTTGACAACCACATGATTCATGTTCACTATTTTT ATGTATTTGGTATATTATACAAGTATACATTAGTGCAAAATATTAGGAACTCAATTGTATGTAGACTTAATGAGAGGCGG GTTTTTATGGATTTGGTATGCAATGCAATCTTACGCATGTAGAGGCTGGTTATAACTTATGTGCTACATAGGGGTAATTT AAATTGGCATCCCCCCTCCAATTTCTCCTGTTTCTTTGCTTTTTCTGTAACATCATGTTGAACTCATGTTGGTATAGTCC ATTGTGAAAAAATTCTATTTCATCCGTAGCTTCTTTCATTAGAACTTATTAACTTGTAATTTTTCAATGAATGAAAAAAA GACAAGAAACAGATTTCTTAAAGCAGTGACTGAGATGCTCATATTCCAAGAGTTAATTATTGCTCTTCTGTTCAGGTGTT GATATTCCAATTTCTGTACTTGCTGCTGAGATTGACACAATTTCTCCTCCAGAGCTTGTGAAACAGTTTGAGCAAGTCCT AGCTGCAAAATCTCAGGTCACATAATTGTCATTTTTTTGTGTCCAGCCTTTTATATTACCTTGATGATTTGCTATTGTTC ATGTTTTTGGGTTCTCTACACACATCATCTGTTACAAGATGCTGTAATCAGTCAATTCAGTTTGGTTAGCTTTTTCACTT TTTCTTTTGCTACTATTTGTGTCTTGAAAATAATTGTGTTGACACATGGTGTACAAGATATACATCACAACTGTGCAAAT GGGCAACTAAATTGACATTTTTAAACCGGGATCCTCATGCAATATATAATTGCTCATCTAGACAAGAAATTGTTTTTTAT CAGACATTGATGCATGTTTGGATTTTGGAAATCATTCTACAATTGATTGATTCTAAAACCAAAATTAATTATGGGAAGAA GCTTCCTGTGAGTAGCTTATGGGTTCCAAAATTGATTATGAGGATATAGAAGTTAATCCAAACGTGCTATGAATTTGCAC ATATGCAAGAATACCTCATGTATGTAAGATACCGCCCATCACTCATGAACCAATTTTTGTTTTTGTGCAGGTTGCCAGTT TTGTGAAAATATTTCCTAAAGTTTCACACGGTTGGAGTGTGAGATACAACCTGGAAGATACAGAAGCTGTGAAGGAAGCA GAGGAGGCCCATCAGGACTTGCTGGACTGGTTTGCTAAACATCTCAAGTGAGAAATTTAGCTGGATTGGTTTGCACATGT TGGTTGTGGAGGATCTAAAATGGCTATGCCTATATTTCCACAAATGTAGCTTACAGTTTATAAGAAAATAAATGCTTGAG TGGGTGTAAAATAAATGCTGTATTGTTTTTTTTTTTTGGTCATTAAATGCTGTATTGTTGTGTCTTGGACAATGGACATG GATCGTATTGGTAGACTCATTGTAGTAATATTGCATTCGATTATAAGTTTGTTGGACTTGTGATTTAAGTTGTGCTATTG CATTCGTTTATAAGTTTGTTGGAGTTGTGATTTAAGTTGTGCTATGGAATTATATTTCAAGACTTTTATGTTAGAATCCC CAACCTTTGATGGTTGCTTATACCCAGGTATTTTCTTAGACTGACTTCTGATAAAATATTCTTGATTATTAATTATTAAT AATTT
CDS sequence (LotjaGi4g1v0350900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGCCCTGAGTGCTGCTCAAATCCACCAACCCTCAACCCCACCGGCGGAGCTGGCCACGTTGACAAGATCGCCGG CGTCAACGCCTATTTCTCCGGCTCCTCTCACTCCAACCTCGCCGTTCTTCTCCTCTCCGATGTTTTCGGATATGAAGCAC CAAATTTAAGGAACCTTGCGGACAAAGTTGCAGCTGCTGGCTATTATGTGGTTGTTCCTGATCTCTTGAAGGGTGAGCCC TTGGACCTTGGGAACCCTGACAGGCCCTTTCCCGCTTGGATAAAAGATCATGGACCGGACAAAGGTTTTGAAGATACAAA GCCGATAATTGAAGCTTTAAAGAGTAAAGGTGTTTCAGCTATTGGGGCTGTTGGTTTTTGCTGGGGTGCTAAGGTTGTGG TTGAACTTGCGAAATCCAGACTGATCCAAGCTGCTGTGCTATTGCATCCATCGTTTGTCTCTTTGGATGATATCAAGGGT GTTGATATTCCAATTTCTGTACTTGCTGCTGAGATTGACACAATTTCTCCTCCAGAGCTTGTGAAACAGTTTGAGCAAGT CCTAGCTGCAAAATCTCAGGTTGCCAGTTTTGTGAAAATATTTCCTAAAGTTTCACACGGTTGGAGTGTGAGATACAACC TGGAAGATACAGAAGCTGTGAAGGAAGCAGAGGAGGCCCATCAGGACTTGCTGGACTGGTTTGCTAAACATCTCAAGTGA
Protein sequence (LotjaGi4g1v0350900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGPECCSNPPTLNPTGGAGHVDKIAGVNAYFSGSSHSNLAVLLLSDVFGYEAPNLRNLADKVAAAGYYVVVPDLLKGEP LDLGNPDRPFPAWIKDHGPDKGFEDTKPIIEALKSKGVSAIGAVGFCWGAKVVVELAKSRLIQAAVLLHPSFVSLDDIKG VDIPISVLAAEIDTISPPELVKQFEQVLAAKSQVASFVKIFPKVSHGWSVRYNLEDTEAVKEAEEAHQDLLDWFAKHLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 239 | 239 | 5.8E-120 | – | |
| PANTHER | 1 | 239 | 239 | 5.8E-120 | – | |
| Gene3D | 25 | 237 | 213 | 5.8E-38 | ||
| Pfam | 30 | 237 | 208 | 1.1E-28 | ||
| SUPERFAMILY | 36 | 239 | 204 | 3.8E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0350900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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