Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0352600.1

Overview

Field Value
Gene ID LotjaGi4g1v0352600
Transcript ID LotjaGi4g1v0352600.1
Lotus japonicus genome version Gifu v1.2
Description Stem-specific protein TSJT1; TAIR: AT5G19140.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|I3SXD3|I3SXD3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0352600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73125395..73129691) extracted from Lotus japonicus Gifu genome v1.2.

ATGAATTTTCTCCGTGATTATTGAATTTATATTTATGAAATGACTATCTTGTCCTCCTCCACTACCTCTATATAATCGAT TCCAAACACTGCAAATTCTTACCATTCCGTGAGTGCGTTGTTCTTGTGAATTGTAAAGTGAGAAAAAATAGAAAGAGTTG ATTTGTTCGATTAGATATAGTTAGAATTTAGCTATGTTGGGTGTGTTTAGCAGCTCCATCGTGTCACCGCCGGACGAGCT AGTCGCCGCCGGCAGCCGAACACCGTCGCCGAAGACGACGGCAGGGGCGCTGCTGAAGCGGTTTGTAGAGAGCAACGCGT CGGCGGTGTCGGTGGAGATCGGGGAGAACGTTCAGCTGGCATATTCCCACCGCAACGAGTCACCGTGGCAACCCAGGTAA ATTAATTAACGTGACTGATCATCATCACTAGCCTAAACGACGTCGTTATGTATTCTGATAGATAGATATAACATCGTTTT CATCTTCAGTAGGTGAATTTTTTGTTCTGGTTCTGTGTTTTTTTATCATCGTTTAATTGATAACTTGCTTAAGAAAGTTT CTACCACAAAAGAATATGGTTAACCAGCCTAGTGAATCGGACGGTTGATTGTTCTCGATCCCACCATCGATGATCCTGAT TCCTTAAGCATATATTATATCCTACTACTACTACTACTACTACTACACTAGTGTTTTACCATATATAAGTTAAGTGAGTG AGTGTAGGTCACAATATACCACACCGATCGAACCATAAAAAAATATAAAAACGGGACAATAATAGATTTGAAACATATTT ATTTGTATTAAAATATTTTTAACAAGTATACAATTCAAGTGAGTGGTTAAGTTGGTTTGAAATGAAAGATCAAGGGTGGT ATCCTTGTTTTTGCATTTTTAGTTTATATTTTTTTTGTTAATTTTATTATAAAATAATAATATAATATATTTTACTTTAT TTTATTTTTATTAATTTGTAAAATATTAAATATTTATTTTTGTAAAGTGAAACTGATATTTTTTATTTTTTTAAAAAATA AATTAAGGGTGAAAATAAAAATAAACCAATAATTCGCATAATTAGTGTCACATCACATGACGCCTATTTTTATTTTATTT TTTGTTTTGAAGGCCACATGACGCCTAACAAAAAAAAAGATGATGTGTTGTTTACAGCCAAACTCAAAGGACAGTTGATA TTGACCAAAAAAAAAAAAGGACAGTTGATGATGCGTTTCTTTAGAGCCTTGATTATGTTAAAGTAAATAGTGGAATGTGG AATTATTAGACTTTGCACATATATAAATGGAATTAATAACTATTTTTTTACAGAAAATATCTTTGTTTCGTAACATATCA ATAACTCCATTAATATTTTGTCATTTTTCGATAAATTATTTTCCTAAGATATACAATAAGCCACTTAATTACACAATTTA AATTTTAAAACCAAAATTGGTGGCCAAAAACACTACTTTGAACAGGAAATATATTTCATTCGAAGACCTCCCCAAGAAAA AGAAATTCGCTTAATTCTGGATTATACTTTTTTGATACTACAATATTGGCTTACTAGAAAGATGGTATCTTTATTTTTCC TTGTAAGGTGGGATGTCACATCCTTCACTAGTTAATTCACTATTATTTGCTTAGTTTATTTAGGCATAATGCTCTGTTCA CACTTTTACGTTTGAGTGGAGGAGAGGTAGAGGGAGTAGAGACATAAAAAAAATTCAGATGTGATATATGTTGATAGGAA AGTTAGAGGGTAGGTAAAAATAGAGTGGAAATTTTTTGGACCATAAATAAATCTGAGTTGGTTTATTAGGTTCCTATGAT GAGTACTCCTATTTTTGAGTTGGGAAGATGTCACGTCATAATGGTAGGCAATGTTCCCATTAAGCATATGACTATCAGAA ACCAGACTAGATTGGTCGAACGAATAGGTGGGGAATGGGGACTATGAGTATGAAGTTTCCAGTTCATCGACAAATTGAAT AACTCAAACCAGACAAACTATGATATTGAAGTCTCACCACTTAAATTCAGGTTTAGAATTTGTAAAACATTGTAATAAAG GCATTGAAAGCATCCCCACTTCATTGTCACAACTTAGGCACATTATAGGTTTGTTTTGACATCGGTGCAAATGCAAAAAC CTGATTTCACATACCAGGTATCAATACGTGACAATGAGCTCATTTGGATACGGGCTTTCAAAGTTTATTAGAGCTTATCT ACTAGAAAAAAAAAATACTTAATAAACTTCAATAAGTGTTCTTTAGTTTGCATTCAAATGGGTGCAAAGTTTATCTGAAG CTATTATGATAGTGGAATATCTATGATGTGCTTACTAGTTAGAATGTGTTGTACAATGTTATTAACTTCATTCCTTTCTA TGTTGCCATCTAAATTTTGAGTGGAAAATGTGAATGGCAGATCATTTGCTGTTAAGGATGAGATATTCTGCATTTTTGAG GGAGCACTTGACAATTTGGGCAGCTTGAGACAACAGTATGGACTAGCCAAGTCAGCCAATGAAGTGCTTTTGGTCATTGA AGCTTACAAAGCTTTACGTGACAGAGCACCTTACCCTGCTAATCATGTTGTTGGTCATCTTAGTGGGAGTTTTGCTTTCA TAGTTTTTGACAAATCCACTTCAACCCTCTTTGTGGCCTCTGTAAGTCACCTAATCCTAATCTTAATCCTAATTTCCTAC CTAACTACCAACTCTAATGAATGACCTACCACAATGAGCTTTCATTCGTGCTTATTTTGCTTGTACTATTTTGGACAGGA CCAATTTGGTAAGGTTCCTCTGTATTGGGGAATAACTGCTGATGGCTATGTAGCATTTGCTGATGATGCAGAATTGCTTA AAAGTGCTTGTGGAAAGTCACTTGCTTCTTTCCCTCAAGGTGGGTCAAGTGTTTGGATCAACTTGTCATAATTGATTGAT TATGCTAAAATTGAGTTGAAAGTGAAACGATTTATGTCTGTGGATACATTTATCATAAAATTGTTTTTAATAGGTAATTT TGTAAAATCCATTTATGAAATCTTAGAATTAAATATCCACCACAAAAACTACTATCTCTACCTTCTCCTCAAAATTTATT TTTGGACTGAAATCAATTCTCTAACTCCATTGTCAAACATGTGTAATGTGTTGATGGACTATATCAGATATGTGTACTTT TCCCTCAAGTTAAAGGAGTTTCCCTCTCATTGTTGACATTTTTTCTTTCTTATTGGACAGGATGTTTCTACTCTACAGCT GTTGGAGGCTTGATGTGTTATGAGAATCCTAAAAGTAAGATTACTGCTGTACCTTGTAATGAAGAGGAAATCTGGGGTGC AACCTTCAAGGTAACAAAATGAAATCAATATAAACACAATTGCAACTGGTACAGTGCTAGATCTAGTGTCTTTTGCTGTC CATTTTTGAAAATATGACATCCAATTTTTTTATACTGATTGTGATTGGTTGTTTCAGGTTGAAGGGCAAGCAGTTCTCGC AGCCAGAGAATAGAACTTTTTATGAGTTATGATGCGTTACTGGAGTTTATGAGGTTGTAACCGGTGAGGGATGCATGAGG GGCAATGTAATTAAATAGCTTTGTGTGTCAGTCATAACTGGAGGGAGGGAAGCAAAGTGGAAGAGGTGGTGTGTGTACCC TTGTTCATTAGATACATAGATTTGAGAATTTACCGTTTCTATCTATGTATGTACAGTGATGTTTTTCAATTTAATAAGTC TGGTTTTGGATCCTCTATCTTCTTCAATCTTACATGTTGCTTGTTCTGTTCAACTCAATTTAATGAGAGCAAATTTCCAT TACATGCTTACAATAATGCTTTTAACAAAAACGCTTTGCAATAATGGTGAGCAATTTTATTGCATGGACAGGACAAGAAT AAAAAGTAATAAAGCATACCTCTATAAAAGGTCATTGGGATATTGATGAAAGATATCTTATTCGTTGAGATATTTTTTCA TGAAAAAACTCTAAGAACAAAGTCAGGTCAAATGTAAAGTGACGTCTTAGGTTTTTTCAACAAATGAACATGATTTTATT GAGTATGAAGAAGTCTCTTATATAGTCAATGTCTCCTTCAAATATCATCATTACAATTACAAAGATAATTAGGGATGTAC ATAAGGAAAAGACATTCAATTATTATTACATTGTAAAGGTAATTAGGGAAGTACATAAGAGAATTAGAGGTAATGAAGGG AGGGATTTGGGTAATCCCTGTTAAATTATATTTACCAACGTGCTTAGAAATGAACTC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0352600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGGTGTGTTTAGCAGCTCCATCGTGTCACCGCCGGACGAGCTAGTCGCCGCCGGCAGCCGAACACCGTCGCCGAA GACGACGGCAGGGGCGCTGCTGAAGCGGTTTGTAGAGAGCAACGCGTCGGCGGTGTCGGTGGAGATCGGGGAGAACGTTC AGCTGGCATATTCCCACCGCAACGAGTCACCGTGGCAACCCAGATCATTTGCTGTTAAGGATGAGATATTCTGCATTTTT GAGGGAGCACTTGACAATTTGGGCAGCTTGAGACAACAGTATGGACTAGCCAAGTCAGCCAATGAAGTGCTTTTGGTCAT TGAAGCTTACAAAGCTTTACGTGACAGAGCACCTTACCCTGCTAATCATGTTGTTGGTCATCTTAGTGGGAGTTTTGCTT TCATAGTTTTTGACAAATCCACTTCAACCCTCTTTGTGGCCTCTGACCAATTTGGTAAGGTTCCTCTGTATTGGGGAATA ACTGCTGATGGCTATGTAGCATTTGCTGATGATGCAGAATTGCTTAAAAGTGCTTGTGGAAAGTCACTTGCTTCTTTCCC TCAAGGATGTTTCTACTCTACAGCTGTTGGAGGCTTGATGTGTTATGAGAATCCTAAAAGTAAGATTACTGCTGTACCTT GTAATGAAGAGGAAATCTGGGGTGCAACCTTCAAGGTTGAAGGGCAAGCAGTTCTCGCAGCCAGAGAATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0352600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGVFSSSIVSPPDELVAAGSRTPSPKTTAGALLKRFVESNASAVSVEIGENVQLAYSHRNESPWQPRSFAVKDEIFCIF EGALDNLGSLRQQYGLAKSANEVLLVIEAYKALRDRAPYPANHVVGHLSGSFAFIVFDKSTSTLFVASDQFGKVPLYWGI TADGYVAFADDAELLKSACGKSLASFPQGCFYSTAVGGLMCYENPKSKITAVPCNEEEIWGATFKVEGQAVLAARE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45952:SF10
1 236 236 1.4E-149 –
PANTHER
PTHR45952
1 236 236 1.4E-149 –
CDD
cd01910
2 226 225 1.15233E-135 –
SMART
SM01172
2 226 225 6.6E-126
IPR024286
Pfam
PF12481
2 226 225 3.4E-93
IPR024286
Gene3D
G3DSA:3.60.20.10
52 204 153 1.3E-16
IPR029055
SUPERFAMILY
SSF56235
54 204 151 2.32E-21
IPR029055

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0352600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…