Transcript — View — Lotus Base

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LotjaGi4g1v0354200.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0354200
Transcript ID	LotjaGi4g1v0354200.1
Related isoforms 1	LotjaGi4g1v0354200.2
Lotus japonicus genome version	Gifu v1.2
Description	GAGA-binding transcriptional activator; TAIR: AT1G14685.1 basic pentacysteine 2; Swiss-Prot: sp\|Q9LDE2\|BPC2_ARATH Protein BASIC PENTACYSTEINE2; TrEMBL-Plants: tr\|H1ZNA1\|H1ZNA1_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0354200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:73272644..73275975) extracted from Lotus japonicus Gifu genome v1.2.

TAGATATCTATGAATTTGGACTTTCTCAACATATCTTATATTATTATGAAAATAATGAATGTAGCACCCTCTATTTTATA CTAGCACCATTTTTTCTCTTTCATTCACATTCACATTCCATTCCTTCTTCTCTCTCCTCTCTCTTTCTTTCTCTTTCTCT TTCTCTTTCAGGTTTCTGTCTCTCTCATCTTTCTCTCTCCGCAAGGGCAAACCCTAAAGACCGTTTGCACCCACCAAGTA AGTTTTCTCTCTCCTCTCTCTTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTTCTCTCTCCCACCCTT TAAAATTTGAATAGATGGGGTCCTTCTTCTTCTACCACTGAACCTCCTTATATATATAATTTGTATTCTGAATTGAATTT GTTTCTATTCGCCATTTCAATCCAGATCTCAATTCCCAATTTTTTGAAAACCCTAGAATGAAAATTGGGGATCTGCACTC CATGCTTGCCTTCTCTGTGTTTTCTGTTTGGTTTCATGGAAAATGTAGGATTAGTAATCACATTCAGATCTTGGGTTTCC CTCTTTTCGGTGATTAATCGACAAAGTTCAGATTTTTATTTTTTAACTCTGAAACGGTAAATCTAGATTTATTTGAACCC CTGATCTAAGAATTTGGATTTGATAATCTCATGCATTTTCAATTTTTCTGGGATCTGATGTTGTTTTGTTAATTTTGGGA ATTTGGGTATATTTGATTTTGGGAATTTGTTTATGTAGTGTTAATTTTGGGAATTTTTGATTTGGTACTGTTCTGTTCAT GAATGCTTGTGTTGGATTGTTAATATTATAATAATGATGGATGCTGGAAGAAGAAGCTTAAGATATGTTTTGAAGTTTTA TGATTCTGTATTCTGTGTTATGTAGTTGTCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAGCCCTT CAAAGGGGGGCATCTTGGGCTGCAGCTGATGCCTGGAATGGCGGATCGTGACACGAAGCCGTTTTTTCCTGGGCGCGATC CAGCTATGTTAGTAGGTGCAAATGGAGCTTTTCACCCTCGGGATTGTGTTGTTTCCGAGCCGCCTATGCCGATGAACTAT GTTAGAGATAATTGGATAAACCAGAGGGATAGGATATTTAATATGCAGCCCCCGAATCCTAATTATGCTGTTCTTCCAGA GACATCAGGAGCTCCGTCCTTGCCAGTTATACAGCCACATGACATATCAAGAGATGAGAAACCGGATCGAATTGAAGAAT TGGTTGTTAAAAAGGAAGGTGGCCAGTCGAAGAAAAGGCAAAGCAAGGGTGCTCTGACAACCCCGAAAGCTAAGAAGCCT CGTAAACCAAAGGACAATAGCAATGTTGCAGTTCAGCGTGTCAAACCACCAAAGAAGCCTATGGAGCTCGTCATCAATGG GATTGATATGGACATTTCTGGTCTACCTGTTCCAGTTTGTTCATGTACCGGGTCTCCTCAACAGTGTTATCGTTGGGGCT GTGGAGGTTGGCAATCAGCTTGTTGTACCACAAATGTTTCTATATATCCTTTGCCGATGAGCATAAAAAGGCGTGGTGCA AGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTGGAGAAACTTGCAGCTGAAGGTTACAATTTTGC TAACCCAATTGATCTAAGAACTCACTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGGTAGATTGTTACTGATG AGACACATGAAATTTGGTCTGTCTTACCTTACCTGTATATTCACCTGTGTGGTCTTTCACGCAGATGCTGAGTTATTTGC TATCCAAGAATTTTCTGTTGTGGTACTTTTACTTAAAATTTGGATATTCCATTTCTTTTGTTCTTTTACCCTCTTCAGCT TATGTGACAAGGGACCACCCGTGTTGTATGGCATTAACATTTATGTAGATGAGTTGTTACTAGATAGACTATTTTTGGAT TACACATTTCATTTTAAAATTGTTAAGATTTTGCAATGCTTTGATATTTGTTTCTGACGTGTTTATATTAATAGAGTTAT CTTTTTATTGCCCCTTTGACTTAGGAGGTTTGTATGCCCCTCAGTTTTGTAGTTGTGTAGGTTTGGTAACAATACTTACT AGAATTGGATGCCACGGTTTTAAATTTCGGTCGCGTTTGCGGTTATGTCGTGAAATTGCTGATAAATGCGGGATGATGGG GCCACAATTGCAATTGCGATACTGTTGCGGGGATTGAAAATCCTTTATGTTGTGGCCGCGATTTAAAACCCTAGTGGATG CTGCTTGAAATGTTCTTCACTTGATCTTTTAGGATCCAGGTGGAGTTTTCATAACATGGTTTAAGCTGACAATTCCTTTT AGAGAATATAATGGGGCTAAGAGTCTATATGTCCCTGTTCTATAATCCCACCCCATTTGATACCAATGAGACTCTATTGT GAGACTCTCATAGGTTAGGGAGCTCTGTGCCAGCCATCGTGTCTTTCGTAGATTGCTCTCCACGGTTTGTTTGCCAATTA ATTCAGTGGTCTGGTTCATTGAGTTAGCTAGAATCTTTTGTGCTTTGTATTCATTCATGATTCCATTACTGTCTTTATAT GATCTACTTCTCTGTCTCTTCCCTCCTAATCTGGTTGAACTGTTCCTTTTTATCTGGTTAAGCTGAGCATTTCCAACTTC CCCCTTTTTGTTTCCCTTGACAAGTGGAAGGCTCTATACCCCTCTATTGTACTGTAGTACTTTGAATTGAAGAAATGAGA GACTAGGGAGGCATGAATAGATCCCAGTGATCTCGTACCCTGTGATTTGAACTCAGTTCCTCCACTATTTTTAGTTGGCT CTTGTCAGATAGAGTTGGCATCCGAATCGGCTATTTCGGGTTGAAAATTTTGATCTTCATAGCTTGCATTGCATTTTAAG AATAAAGTTATTTTGGTATTGATAGTCAGAATCCGATGGCAATGTTGACCAAAATAGCATGTTTACATTAACCTGATTTG CACAAATCTGGCTAATACATAAGCAATGATATTAATTTGGATAAAGAGGGTTGATTGCACGCTGTACACAGACAAAAAAA TTGATTGTTTTTTGCGTGCATTGTTTATTAAAGGAAACGATATGGCAAGATGTTTTTACTCACCCTTGCTTAGTAGTCTT GTTCGTCCTCATTTGCTGAGAAAGTTACTTATTCGTGTCAATCGTGTTTGTACAGCTTGGTGCCGTACTTCACCTTAGTC TTTCTATTTTTCTCCTTTCAGTCACAATATACTGTCTCTATTTAACAGCTTC

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0354200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAGCCCTTCAAAGGGGGGCATCTTGGGCTGCAGCTGAT GCCTGGAATGGCGGATCGTGACACGAAGCCGTTTTTTCCTGGGCGCGATCCAGCTATGTTAGTAGGTGCAAATGGAGCTT TTCACCCTCGGGATTGTGTTGTTTCCGAGCCGCCTATGCCGATGAACTATGTTAGAGATAATTGGATAAACCAGAGGGAT AGGATATTTAATATGCAGCCCCCGAATCCTAATTATGCTGTTCTTCCAGAGACATCAGGAGCTCCGTCCTTGCCAGTTAT ACAGCCACATGACATATCAAGAGATGAGAAACCGGATCGAATTGAAGAATTGGTTGTTAAAAAGGAAGGTGGCCAGTCGA AGAAAAGGCAAAGCAAGGGTGCTCTGACAACCCCGAAAGCTAAGAAGCCTCGTAAACCAAAGGACAATAGCAATGTTGCA GTTCAGCGTGTCAAACCACCAAAGAAGCCTATGGAGCTCGTCATCAATGGGATTGATATGGACATTTCTGGTCTACCTGT TCCAGTTTGTTCATGTACCGGGTCTCCTCAACAGTGTTATCGTTGGGGCTGTGGAGGTTGGCAATCAGCTTGTTGTACCA CAAATGTTTCTATATATCCTTTGCCGATGAGCATAAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGT GCTTTTAAAAAGGTTTTGGAGAAACTTGCAGCTGAAGGTTACAATTTTGCTAACCCAATTGATCTAAGAACTCACTGGGC TAGACATGGCACCAACAAGTTTGTCACTATCAGGTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0354200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDDDVLNMPNWGYYEPFKGGHLGLQLMPGMADRDTKPFFPGRDPAMLVGANGAFHPRDCVVSEPPMPMNYVRDNWINQRD RIFNMQPPNPNYAVLPETSGAPSLPVIQPHDISRDEKPDRIEELVVKKEGGQSKKRQSKGALTTPKAKKPRKPKDNSNVA VQRVKPPKKPMELVINGIDMDISGLPVPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQG AFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31421:SF0 View details on PTHR31421:SF0 Search for proteins/transripts with this domain View external data on PTHR31421:SF0	1	278	278	4.5E-132	–
PANTHER	PTHR31421 View details on PTHR31421 Search for proteins/transripts with this domain View external data on PTHR31421	1	278	278	4.5E-132	IPR010409 Show description in modal box View details on IPR010409 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01226 View details on SM01226 Search for proteins/transripts with this domain View external data on SM01226	1	278	278	2.4E-163	IPR010409 Show description in modal box View details on IPR010409 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06217 View details on PF06217 Search for proteins/transripts with this domain View external data on PF06217	1	278	278	3.2E-107	IPR010409 Show description in modal box View details on IPR010409 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	87	164	78	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	110	135	26	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0354200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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