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LotjaGi4g1v0356000.1

Overview

Field Value
Gene ID LotjaGi4g1v0356000
Transcript ID LotjaGi4g1v0356000.1
Lotus japonicus genome version Gifu v1.2
Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT1G17020.1 senescence-related gene 1; Swiss-Prot: sp|Q39224|SRG1_ARATH Protein SRG1; TrEMBL-Plants: tr|A0A151T2G9|A0A151T2G9_CAJCA Protein SRG1; Found in the gene: LotjaGi4g1v0356000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73452018..73456493) extracted from Lotus japonicus Gifu genome v1.2.

AAATACAATAGACATATTTCCCGTGCAACGCGTGGGTAAAAAACACTAGTTTCAAATTATTTAATATGAACCACAATATT AAAATATTAGACCCGTGCTCTCGTATTGCCCAATTAAGATGATAGCTTATATTTGAAGTATGGATGGCTGTTATTGTTAT CTAGTGATGGTGCTGCTGCACTCATTTTTTGTTGTTGGAGGTTATTGGTTTTTGCTTGCTGCCAATTCATGTGTTCCCAT TGAATGGTCTTTGATTCCTTGTTCCTTTTTTCACAAGTCAAATGGTGCTGGTTTTTTTTCCTGGAGATACAGATTCAGAT TTATAAATTGGTTGAAGACTTGGTCTGATCTTGGAAGGTTTAGCAGTGGGGTCTGGGTTGGGCATTAATTTTCTTTGTAA ACACCCTTGAAAATTCCTCTTGACTTCTCAAAATTGGTACTCTTTTTCTTTGTTAGGTTTTCCTAAGGGGGTTTTATCCT AACAAGGTTTTAATGAGGCTTGTTTTGTTAAATTTATTTTCAAGGGGGTATTAGGTGGGGTAGTTTCATCTTTTATAGGG TTAAGTATTTGTACTTGTAATTTTCTGTGTTTTTTCTCTACTTCCTTCTTCTATCTCTTGTATTGGGTTAAAATACCCCT TGTACTTCTATTCAATATATTTTTTATTGCCTATTAAAAAAAACAATATTCTATCAAAAAAAAAATATGAACCACAATAT TTAAATTGGATGACTATTATTGAAGAGAGAGGATTGCGATGGCATATTATTAAAATATTGATACTTTGACTGATCTGATG TTTCTATAATCTGTGTTTTACCTTCCTATAACTATAACCATTTCCAATTATATATATTTCTAGGATCTATTATTCTATTC CAAAAACAATCAAATTGTTGATCAATTTATACTCAGCTAGCTGAAGCCATGGAAGCAACTCCTCTTGCAGTGCCCTTTGT TCAAGAACTAGCAAAGGAGAAACTAACTAGAGTTCCAGAACGTTATGTTCGTCTTCACAATGAACGACCAGCATTATATA ACTCTAGTACTACTCCTTTGCCTCTTCCTATTATTGACCTCAGCAAACTGTTGTCCAAAGATCACAAGGTACCTGAGCTG GAGAGGCTGCATCAAGCATGCAAAGAATGGGGTTTCTTTCAGGTTTTTCATCTACTGCTCTCCCCTGTTACTTCTGCTTC TTGTTCTGTTCTGCTCCTTAATTTCATTCCCTCTTCATCCCGGAGAAATTAAAAAAAAAAAAATTATGGATGAACCAAAT AATAATAGAAATCATGTGGTCAGGAATTCGATCCTTCTTGACCCTTTGTTTTAATAATTTGAAAAAAAATAAAACATAAT CGCACTTTAGTTATTCTTGTTCAGATTTTATATGATCCTATAATTTCTTTCAGCTGATTAATTAAGTTCTTACGCATAAA CAAATATAGTTCTTTTATCACATTTCAAATAAAAGAACCTTAAATCTTAATTAATTCTCTAATCAAATATTTATGATGTA TTGAGAATATAATTTAAATTTAAAAGTCTAAGAATAACAAATTAGTGGAAAGTGTTAAGATATAAAGTACTTTATAAGAT ATAAGTCACGTTATAAAGAGCCGGAAATATGATTTTTTTAAAAACAAAATTAGGTGAAATTTATTATTTTGGACTTTTAC TTCATGGTTTCAAGTAGAAGGTTTACAATGATTTAATTACAAATCAATTTGTGAAAATTTCACTTAGAAAGTTAAAATTT GAGAGTTTTAGGTTTAATAAAGGCTTCAATTTGTATTTTTTGGTCTTATTGGTATGGACTATGAGTGTTTTAGTTCTTTT TTTTTTGACAACAGAAAAGATATGATTGAGCATATATTGTTTTGATCATTATGTGATTAAAGTTTTTTTTCTTCCAATCT CATCCTACAAAATTCTTTAAAATTTATCGAAATTTCACTAATTACTTAACTTTGAAAACATAAAAAATTATATTATATCA CATATCTCATGCATCATAAACCTTAGGATATTTGAAAATAAAAAGAAGAGTTGGTGATTTCACAAATATGAAAATTAAGT GAATGACCAAATTTTCTTAATTTCAAAGGTAAATTTCAATTAGCTTGAGAAAAGCTAGATGGGCCAAAATAACTCATCCT CACACACCATACTAAATGATCAAACAAATGCAATTAAGATAAACAAAAAATGAAATTTTCGCGACTATAAAACTTGCACC ATAATTCTTGACTTATCAAAAAAACAAAACTTGCACCATGAGTCTATAGCTACCTAATAGAACAAGGTCAACCAATTACA TATTATAAACTATAAATTAAATATAAAAAATTAATATCGATCTACATCTCAGATTACCTTTTTCGAAAAGTTGGATGATC AATATATCTGAAATGAGCGAGTAATGCTTTCTAACTTTTGACTAAAATATATAGCTGATAAATCACGGAGTCAACACTTC TCTGCTAGAAGACGTGAAGAGAGGTGTTCAAGAATTTTTTCATCTTCCAATGGAAGAGAAGAAGAAGTTTGAGCAAAGAC AGGGAGATGTGGAAGGGTATGGTCAACTATTCGTGGTTTCTGAAGATCAGAAACTTGAGTGGGGAGATGTGTTCTTCATG TTTCTATTTCCTCTAGAAAAAAGGAAATCATACTTATTCCCGAAGTTACCATCAAAGTTCAGGTTCTCTTTCTCCTTTTA TATTTCATTTTGTTCGGTTACCAAACGCTAGATAAATCTAAAGCATTTTCTTCTCTCCATGCACAATTTAATTCCTTATT TATATAGTTGACTAGATATGTGACATTTTTGTGTAGTACTACCTCCGGTTCTATTTATAAGCAAAAAAAAAAATCACATA GTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTAAATCAAAATAAACTTCAAAAATTATCCTTTGT TATTAGTATTGGAAAGTGGGAAAGAAAAAGAATAATTAATGAGACACATTTACAAGTTAGAATTAATAAAGACATCTTTG GAAAAAATTAATTAATATAACTCTAACTTTCATTTAGTTCTTATAAAAAGGATCAAGATTTTTCTTCTCTTTCATACTTA TAAATAGGACCGGAGGGAGTAATATGAGTGTTGAGCATGGTTAGGTGTTAGCTACGAGTGATTATAATGTGTCCGAAAAT TATTTCTTCTAGGTAGATGTGGGCATTCGTGTTGAATCGCATTTTATATATCTTGTGTTTTTTCTGCTATGTTCTCTTTT GCTCTTATTAATTAGTATATATATATATATATATATATTATTTTGCCTTTTCAAAAAAAAAATATCTTGTGCTTTTTGTT ATTCCTCATCTCTTTCTGACCACACAAGTGACGTCAGGGTTTGGAAAGAAGTGGTCAAAGTCCATATTTTCTGAAAATGA ATTACTCATATGTGTATGGCTTGATATTGCAGAGATGATCTAGATACCTATTATACAGAAGTGAAGAAATTGGGTATCCA TATCCTTGAGCTAATGGCAAATGCCCTCAAAATAGACACCAAAGAAATCACAGAGCTCTTAGATACCACTCAAGCAACGA GGCTTAATTACTATCCTCCATGTCCTCAACCTGAGCTTGTGACGGGGCTCAATCCTCATTCTGATGCAGGCGGTCTCACC ATTCTTCTCCAAGCTAATGAAGTGGAAGGTCTTCAAATAAAAAAAGATGGAATGTGGATTCCAGTTGAACCTCTTGCCAA TGCTTTTGTCATTAACATTGGAGATATATTGGAGGTAATAACCAATGGAATTTATCCAAGCGTCGAGCATCGAGCAATAG TTAACTCTGAGAAGGAAAGGATTTCCATTGCTGCATTTCACAATCCGAGTATGGAGTCAATAATAGGTCCAGCACCAAGC CTTGTTACACCAACAACACCAGCAAGGTTCAGAAAAATTAGTTATGGAGAGTACTTTAAAGGGTACTTGTCACAAGAACT TCGTGGGAAATCTTTCCTTGACAGCATAAGGATAGAAAATGAAGAAAACTTCTAAGAAATTATACTGGAGAAAAATAGAA AAGTTGAATATAGGGCATTGGAATTTCTATATTATAATATACATTGCTATTGACTTCAGCTGGAGTTAAGCATGTGCTAG AATAACGATTGCATTTTATTATGTTCGCACTAAATATATTGAGGCTGTGTTCAGCCATATTGTATACGAATATTATTATT TGTTGAATTCCTAGGATAAAAGAAGAAGAAAACTATCTATTGAATAAGATTGAACTGGTTACTGGTTAGTATTGCTTGGT TTTTATTAATGATGACAAATTTATTTTTGGTTATTTGGATGAGATTGGATAGCCTTAGATGCGGTGGTTGACGTTGACTT CTGAGATACATATGAACCACTGATGGATCCAGAACTTTTTGGTGTGGAGACAAATATATGCATGTGAATTTATCAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0356000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCAACTCCTCTTGCAGTGCCCTTTGTTCAAGAACTAGCAAAGGAGAAACTAACTAGAGTTCCAGAACGTTATGT TCGTCTTCACAATGAACGACCAGCATTATATAACTCTAGTACTACTCCTTTGCCTCTTCCTATTATTGACCTCAGCAAAC TGTTGTCCAAAGATCACAAGGTACCTGAGCTGGAGAGGCTGCATCAAGCATGCAAAGAATGGGGTTTCTTTCAGCTGATA AATCACGGAGTCAACACTTCTCTGCTAGAAGACGTGAAGAGAGGTGTTCAAGAATTTTTTCATCTTCCAATGGAAGAGAA GAAGAAGTTTGAGCAAAGACAGGGAGATGTGGAAGGGTATGGTCAACTATTCGTGGTTTCTGAAGATCAGAAACTTGAGT GGGGAGATGTGTTCTTCATGTTTCTATTTCCTCTAGAAAAAAGGAAATCATACTTATTCCCGAAGTTACCATCAAAGTTC AGAGATGATCTAGATACCTATTATACAGAAGTGAAGAAATTGGGTATCCATATCCTTGAGCTAATGGCAAATGCCCTCAA AATAGACACCAAAGAAATCACAGAGCTCTTAGATACCACTCAAGCAACGAGGCTTAATTACTATCCTCCATGTCCTCAAC CTGAGCTTGTGACGGGGCTCAATCCTCATTCTGATGCAGGCGGTCTCACCATTCTTCTCCAAGCTAATGAAGTGGAAGGT CTTCAAATAAAAAAAGATGGAATGTGGATTCCAGTTGAACCTCTTGCCAATGCTTTTGTCATTAACATTGGAGATATATT GGAGGTAATAACCAATGGAATTTATCCAAGCGTCGAGCATCGAGCAATAGTTAACTCTGAGAAGGAAAGGATTTCCATTG CTGCATTTCACAATCCGAGTATGGAGTCAATAATAGGTCCAGCACCAAGCCTTGTTACACCAACAACACCAGCAAGGTTC AGAAAAATTAGTTATGGAGAGTACTTTAAAGGGTACTTGTCACAAGAACTTCGTGGGAAATCTTTCCTTGACAGCATAAG GATAGAAAATGAAGAAAACTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0356000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEATPLAVPFVQELAKEKLTRVPERYVRLHNERPALYNSSTTPLPLPIIDLSKLLSKDHKVPELERLHQACKEWGFFQLI NHGVNTSLLEDVKRGVQEFFHLPMEEKKKFEQRQGDVEGYGQLFVVSEDQKLEWGDVFFMFLFPLEKRKSYLFPKLPSKF RDDLDTYYTEVKKLGIHILELMANALKIDTKEITELLDTTQATRLNYYPPCPQPELVTGLNPHSDAGGLTILLQANEVEG LQIKKDGMWIPVEPLANAFVINIGDILEVITNGIYPSVEHRAIVNSEKERISIAAFHNPSMESIIGPAPSLVTPTTPARF RKISYGEYFKGYLSQELRGKSFLDSIRIENEENF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10209:SF500
2 343 342 2.6E-133 –
PANTHER
PTHR10209
2 343 342 2.6E-133 –
Gene3D
G3DSA:2.60.120.330
6 339 334 4.9E-113
IPR027443
SUPERFAMILY
SSF51197
8 339 332 1.51E-105 –
Pfam
PF14226
46 142 97 1.1E-27
IPR026992
PRINTS
PR00682
67 84 18 4.1E-6 –
ProSiteProfiles
PS51471
199 299 101 14.378
IPR005123
Pfam
PF03171
200 299 100 6.7E-28
IPR005123
PRINTS
PR00682
287 305 19 4.1E-6 –
PRINTS
PR00682
324 342 19 4.1E-6 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0356000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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