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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0362200 |
| Transcript ID | LotjaGi4g1v0362200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT1G30330.1 auxin response factor 6; Swiss-Prot: sp|Q2QM84|ARFY_ORYSJ Auxin response factor 25; TrEMBL-Plants: tr|I1K3I1|I1K3I1_SOYBN Auxin response factor; Found in the gene: LotjaGi4g1v0362200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74120141..74122502) extracted from Lotus japonicus Gifu genome v1.2.
GCTGAGGATGTGAATTTGTATGTCTAATATGATTGTGAAACTTAATGTTTTTGAATTCTTTGAGGGGGGCATGTAGAATT GTTTAGCCAGTTTCTCTAATTTCCACCATAGCTTAGAGATCAGAGAAGTTATTTGGCTTAATAGCTGAGCACCAACCTCT TCAGTTTTTTTTCCTGAGTTGTTCTTAAGATCTTGGCTTTGCCAAGAATATGCCAAAATCATTTTGTTCTTTGACGCACT TTGGGGATAGTTATGATCATTCTTCTCCATATTCATGACATTTGGATTGGTTTTTGTAGGAGAAAAGCGAGTTCTAGATT CAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTAGGAAGCCGCGTAGTCTACTTTCCACAAGGT CACAGTGAACAGGTGATTATATATGGTGTTAGATTATTGCTCCATGAGAAAAATCCTCGCCAAAGTGATCCTTCACTTTC TTCTTTTTTTTTACCAGTGTATGTCTAAAAGTAGCTGTAGGAATCTTCAGCTTCTGGTCATGAAGATGCTATTTTGCTTA CATACCTATATTATGTTTTGAACTTGTTCTTTTACCTTGTCTCTGGTCTAAGGTTAAGCTTACTTCTGCACTCGTGTCAC AAAACTGGCTTTATTCACTACTGCAGCCCTTTTGTGTATCCATGCTTAACTCACTTTTAACATCTTTAGTCTCAAACAGT TTCAGTTCAGGTTAATGAATTTAGAGGCTGTTTGGATGCAGACTAAATAACACTTATTGGAGCTTATCTACTTAAAAAAC ACTAGATAAGCTCCAATAAGTGCTCTTTGGTCCTACTCACAGGAATGATTCTCCACCTACCTCACTGGAACCAGCATATG AACTTCACATTTGCAAATATTTGTTCTCTTTCTACACATGCTACGTGCATGCATAACCTAAATCAGCATTTTTCTGCTTA GGTTGCTGTATCTACCAACAGGGAAGTGGATGCTCACATCCCCAACTATCCAAGTTTACCTCCCCAACTTATCTGTCAAC TTCATAATGTGACTATGCATGTAAGGCTTGTTTATTTAGTTATTTATTAACATTCATTAACTTGTTATGTAATAGTAAAC AAGTTTATTTTGGTTTCGTTGTTTAAATTTTGTTTAAAATTCACCCGCTCTCTAGTTTTCTTTAATTATTTGTTCATTTC TGCTGGATTCAGGCAGATACTGAGACAGACGAAGTATACGTGCAGATGACCTTGCAACCTCTGAATCCTGTATGATTCCC TTTCTTACTGATCATTAGTTGTTTGGGTTTAATTGTTGTATTCAAATTTCAACTTTTGGTTTGACTCTGTTTCCAGGAAG AGCAGAAGGAGGGATACCTTCCAGCAGAGTTGGGGACAGCGAGTAAACAGCCAACAAATTATTTCTGCAAAATTTTGACG GCCAGTGATACAAGCACTCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGTAAAATT GCCACCCCTCCCCTCCCCTCCCCCCTCTGTCAGTTGAGCCAAACACTGAGAGAAAGGGAGAGATTTCATAACTAATTTAC TTTTGTACCTTTTTAATATGCTTATTGCTTGTTTTGTTATTAGGATATTTTAGCCAATGTAATTAAAATTCTTTAAACCC ATCCCTCACAACTCCCCTTATATTGACCAAGAGCCAAAATTGAGAGAGGAGGGTTTTTGGTTCCATGCCTCTGTCCATTC CCTTCCTCTCCTGTTCAAATTGTTTGAACCTAACAAAAAAATCTTTACAAAATCCCTCCCCTTCCCTCTATTCTCTAACC AAACACTAAGTAAAACTCTTAACGTCATAATTATGACCTACAGGACTTTTCACAGCAGCCTCCTTGTCAAGAGTTAATTG CAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGTGGTGAGTTATAAAGAGATTGTTGACCTATTTTT AATTGTCATGCAAATGTAGGATTCTGTTTATTTATTTATTTTGATTTAGTTTGTCTATTTTTACTTACTTCAATTAGAAA CTTCCGTTTCTTTCCGGCTGCTGAAAATAAGTTCACTTTTCATTTACAATGTATGAATTTGGTGTTTTTTTTTTCTGCAG GCCAGCCGAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTG CTGTTTATCTGGTAAGTAATTGTCTGCTTCTTTCAATTCTATTTGATCTTCACGCATATTGAAATTTGGCCGTTGGCACT TATGCAGTTGATTGACTTGTCTCACTGAACCAAGACATGTGA
CDS sequence (LotjaGi4g1v0362200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGCAGATACTGAGACAGACGAAGTATACGTGCAGATGACCTTGCAACCTCTGAATCCTGAAGAGCAGAAGGAGGG ATACCTTCCAGCAGAGTTGGGGACAGCGAGTAAACAGCCAACAAATTATTTCTGCAAAATTTTGACGGCCAGTGATACAA GCACTCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAGCAGCCTCCT TGTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGTGGCCAGCCGAAAAGGCA TCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTGCTGTTTATCTGTTGA
Protein sequence (LotjaGi4g1v0362200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHADTETDEVYVQMTLQPLNPEEQKEGYLPAELGTASKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPP CQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 8.7E-98 | – | |
| PANTHER | 1 | 131 | 131 | 8.7E-98 | – | |
| SUPERFAMILY | 28 | 131 | 104 | 6.93E-42 | ||
| Gene3D | 41 | 132 | 92 | 3.6E-39 | ||
| CDD | 43 | 130 | 88 | 2.24233E-25 | ||
| ProSiteProfiles | 44 | 132 | 89 | 12.266 | ||
| Pfam | 44 | 130 | 87 | 3.0E-22 | ||
| SMART | 44 | 131 | 88 | 9.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0362200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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