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LotjaGi4g1v0363100.1

Overview

Field Value
Gene ID LotjaGi4g1v0363100
Transcript ID LotjaGi4g1v0363100.1
Lotus japonicus genome version Gifu v1.2
Description 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|A0A072TNF4|A0A072TNF4_MEDTR 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi4g1v0363100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:74224055..74226482) extracted from Lotus japonicus Gifu genome v1.2.

GTATCTGCATAGGCCAAGCAGCTGTGTTGCCTAGTTTTCACTGCCCAATGAGCATCTCAGACGTGAAAATGAGGTGGGAT TGAATAATGAATTTGCAGCTCTATTTTTTTTGTTACCATCATTCTACTGTTCTTACTAGAATTTCCACAAGTGTCTCAGA ATTGATTTTCTAATCAAACATGTGTCACAAGCATTGAACTTTAGACAACATCTCTCTCTAATCTTAACTTATAACTTATT TTGTATTTATTTTTTCTTCATTATTCATTCTAGATTTTAGTTTGGATATACAAGCCTTTATATTTCATCTACAAATATAT CTCAAGTCTTAACTGCATGTGTGGGTTATGTTAATTTTTAAGGAATGTACTGAACCAGTGTGGTATGTGTATACAGTGTG CTTCTAGCTTCATCATTGCTTTTTGTGTCAAGTTTTTGTTTACAAATCTGAACTTGCTATCCAAATATTTGCAATTATGT TTGCAAACAATCTTAAGATCAATCTATAAAATTGAACTTTGTGGAATTAAACTTATCCCTAGGAGATTTTGGTAGCAAAA ATAAATTTTAGTTAGTTATTAAAACAAAGTTATCTTAAAGATATCACTTTTCTGTAAAATGATAGGGGACATAAGGGTGG GGAGGGGAAGGTCCAGGGTTCGAATCCTGGAAGGGAACTTTGAAGGGATTTTATAACTTACTAACAACTAACCACTAACA TTTGCCTATAAAAAAAAAAAAAAAAAAAAAATTTTCTGTAAAATGTATTAAAACATAAATTAAGTCTCTTTAATTCTTGT TTAATTAAAAGCAATTTTTTTGAACCAATCCTCATAGAGTAAAATCACTTTTAGATGATATGTTATAGATGTTTGAGAGT TATTTTGGAGAATTGATTTCATTGCCTAAAGCCAATTCTGCGAAAAAGCTATAAAGAATGACTTCTGCATTGATCATAAT TAATTATGAAACTTCACAATCGGACTTCACAACATTACTCTACAAAAATTATTTTTTTATAAATATATCCTAACATAAAT CACTTCATTTTTAATTTAACTCAACTTACTTTTATCAATAATCAATTTCACCAAAATCAATTTTATCCTGAATGAATTGT GGCAATAATATTATAATCCATACATGCCCTGATCTTCATGAATGCTGTATATACAGGACATCAATTGAGAAAATCCGGAG TCTGAGATTGATAACTGCCATCAAAACTCCATACCTCCCCAATGGCCAAATTGATCTTGAAGCATATGATAACTTGGTGA ACTTCCAGATTGCACATGGCATTGAAGGTATCATTGTTGCTGGCACAACAGGTGAAGGCCAATTGATGAGCTTGAGTGAT AAAATAATGCTAATTGGTCACACAGTTCACAATTTTGGTGACAAAGTTAAAGTCATTGGTAACACAGGAAGCAACTCCAC ATCACAAGCAATTAGCATCACTGAACAGGGTTTTGCTGTTGGAATGCATGTTGCACTTCAAATCAACCCTTACTATGGAA GAACCTCAATGGATGGTTTGATTGCTCACTATAACTCTCTGCTTTCTATAGGCCCTGTGATTATATATAACATACCCTCA AGAACTTCACAAGATGTTCCTCCTAGTGTGGTTGAAACCTTGGCACCAAATCCTAACTTTGTTGGTGTGAAAGAGTGTGG GGGAATTGACAGGGTGAAACTGTATGCAGATAAAGGAATTGTTGTGTGGACTGCTAATCAAAGAGAAATGCATGATGGGG CTATTGGAGACATGTCTGCTGTCAGCAACCTTGTTCCTGGTTTAATGAGAGAGCTTATGTGTGGGGGAAAGAATCCATCA TTGAGTTCAAAGCTTGAGACTTTGTTTGATTGGTTTTCCCTTGAGCCAATCCCAATTGCTTTGAACACTGCTCTTGCTCA ACTTGGGGTTACCAAGCCAGTTTTTAGGCTGCCATTTGTGCCTCTCCCTCAGGAAAAGAGGGTGGAGTTTGCCAAGTTGG TGAAGGAAATGGGCAGAGAGCATTTTGTTGGGGAAAAAGATGTTGAAGTTCTTGATGACCATGATTTTATCATTGTTGAT CGATATTGATTTAGATTTCCCTTTTCAAGTCATGTTTGATGTTACTGTTAAGTTTGTATTTGTTTGTACCACCAACTATG AGTGGTGAAACGGGTTGGATTAGGTGTGTTGGTGGGTTGGATATCTCCAACCCATCTCATCAAAAAATGGTGGGCTAAAG TAGACTAATTAGTCAGGTGGAGCTCATTTTATCATCTCTGAGATTTGTGTTATTAGAATTCATTTTAGTATTTGACAAAT AGGTCTGAAATTCGACTGAGATGGAAGAAACATATGCTCTCGGTTTATTTCATGTTTATTATGTTTTTTTAAGAGGTTGA ATAAATTTGTAGCCCCTTCATTTCATCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0363100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCATCTCAGACGTGAAAATGAGGACATCAATTGAGAAAATCCGGAGTCTGAGATTGATAACTGCCATCAAAACTCC ATACCTCCCCAATGGCCAAATTGATCTTGAAGCATATGATAACTTGGTGAACTTCCAGATTGCACATGGCATTGAAGGTA TCATTGTTGCTGGCACAACAGGTGAAGGCCAATTGATGAGCTTGAGTGATAAAATAATGCTAATTGGTCACACAGTTCAC AATTTTGGTGACAAAGTTAAAGTCATTGGTAACACAGGAAGCAACTCCACATCACAAGCAATTAGCATCACTGAACAGGG TTTTGCTGTTGGAATGCATGTTGCACTTCAAATCAACCCTTACTATGGAAGAACCTCAATGGATGGTTTGATTGCTCACT ATAACTCTCTGCTTTCTATAGGCCCTGTGATTATATATAACATACCCTCAAGAACTTCACAAGATGTTCCTCCTAGTGTG GTTGAAACCTTGGCACCAAATCCTAACTTTGTTGGTGTGAAAGAGTGTGGGGGAATTGACAGGGTGAAACTGTATGCAGA TAAAGGAATTGTTGTGTGGACTGCTAATCAAAGAGAAATGCATGATGGGGCTATTGGAGACATGTCTGCTGTCAGCAACC TTGTTCCTGGTTTAATGAGAGAGCTTATGTGTGGGGGAAAGAATCCATCATTGAGTTCAAAGCTTGAGACTTTGTTTGAT TGGTTTTCCCTTGAGCCAATCCCAATTGCTTTGAACACTGCTCTTGCTCAACTTGGGGTTACCAAGCCAGTTTTTAGGCT GCCATTTGTGCCTCTCCCTCAGGAAAAGAGGGTGGAGTTTGCCAAGTTGGTGAAGGAAATGGGCAGAGAGCATTTTGTTG GGGAAAAAGATGTTGAAGTTCTTGATGACCATGATTTTATCATTGTTGATCGATATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0363100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSISDVKMRTSIEKIRSLRLITAIKTPYLPNGQIDLEAYDNLVNFQIAHGIEGIIVAGTTGEGQLMSLSDKIMLIGHTVH NFGDKVKVIGNTGSNSTSQAISITEQGFAVGMHVALQINPYYGRTSMDGLIAHYNSLLSIGPVIIYNIPSRTSQDVPPSV VETLAPNPNFVGVKECGGIDRVKLYADKGIVVWTANQREMHDGAIGDMSAVSNLVPGLMRELMCGGKNPSLSSKLETLFD WFSLEPIPIALNTALAQLGVTKPVFRLPFVPLPQEKRVEFAKLVKEMGREHFVGEKDVEVLDDHDFIIVDRY
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12128
1 306 306 4.2E-173
IPR002220
PANTHER
PTHR12128:SF58
1 306 306 4.2E-173 –
Gene3D
G3DSA:3.20.20.70
11 312 302 7.5E-96
IPR013785
PIRSF
PIRSF001365
12 299 288 2.5E-90
IPR002220
SMART
SM01130
17 288 272 4.0E-57
IPR002220
Pfam
PF00701
18 286 269 1.1E-71
IPR002220
SUPERFAMILY
SSF51569
20 288 269 1.47E-55 –
PRINTS
PR00146
50 71 22 8.1E-33
IPR002220
PRINTS
PR00146
86 104 19 8.1E-33
IPR002220
PRINTS
PR00146
118 134 17 8.1E-33
IPR002220
PRINTS
PR00146
141 158 18 8.1E-33
IPR002220
ProSitePatterns
PS00666
146 176 31 -
IPR020625

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0363100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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