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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0365800 |
| Transcript ID | LotjaGi4g1v0365800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYND type zinc finger protein; TAIR: AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger; Swiss-Prot: sp|Q9FYF9|FB76_ARATH F-box protein At1g67340; TrEMBL-Plants: tr|I1KS21|I1KS21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0365800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74543314..74545942) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGGTCCAAGGCTGCTTATATATAAACTCCTTGCTTTCACTTTTTTCACAAACCCTCTTTTCTTATCCTCTCTCTAAC TTAAGAGGATTAGAAACATGAGAACAAGAAGAGGACCATGTTATCCTCAAAACATGTGTTCCGATGTAGGTTTCCCCAAG AGGAAGAACGATTTGCATACCCATATGCAAAAAGACTCCATTCTTACCCGGAAAAGGCACCAGAAGTCACCGACCGCCAC CTCCGGTGACGACCATTTTGAGTCCTTACCGGATGACCTCGTTATCTCCATCTTGTCCAAGCTCAGCTCCTCCTCCACTT CCCCTTCTGATTTTGCCAGCGTTTTGATAACGTAAGTCTTTATTCCTTGTTCTCTTTCTTCTTCACATTCTTTTTTTTAA AGATGTGATTTTAATGTTTTTGGGATGAATAGGTGTAAGAGATTAAACAGTTTAGGACTCAATTCTCTCGTGTTAGCAAA AGCCTCTTCGAGAATTTTCTCGATTAGGGCTAAAGATTGGTCGGAATCGGCGCATCGGTTTCTCAAACAGTGTGCAGATG CAGGGAATGTTGAAGCTTGTTACACTTTGGGCATGGTAAGTAGTAGTGATGATAATATTGGAAAAATGAAAAAAGAAATG TGAAATCTGTTTTTGTTTGTTGAAGAATTGAAACTGAAAACGGTTGTTCTGTTTTGCAGATTCGGTTCTACTGTTTGCAA AACAGGGGAAGCGGCGCGTCGTTGATGGCCAAGGCGGCGATTAGCTCTCACGCGCGTGCTCTCTACTCGCTCGCGGTGAT TCAGTTCAACGGCAGCGGAGGGACCAAGAGTGACAAGGACCTCCGTGCCGGAGTGGCGCTTTGTGCCAGAGCGGCGTTTT TAGGACACATCGACGCGCTGCGTGAGATTGGCCACTGCTTGCAGGACGGGTACGGCTGCCGGAAGAATATTATAGAGGGG CGGCGTTTTCTTATTGAAGCAAACGCCCGGGAGCTCGCCGCCGTGATGTCCGCCGCGGATGCTAGGTTGTCAGCCTCCGA CGCCGCTGTGAGCCGGTTGGTGACATGGAGCCTCCACCCGCAGCAACGGCACTTACCGTCGGTGGCGCCGCTGCTGAGCG ACTTCGGGTGGAACGTGCCGGAGCCGGAGCCTCACCCGGCGAACCGGTTCATGACTGAGTGGTTCGCGGCGAAGGATGAT GTTCCAGGGCCGGGGTTAAGTCTCTGTTCGCACATGGGCTGCGGTCGGCCGGAGACGAGGAATCGTGAGTTCCGGCGGTG CTCGGTGTGCGGCACGGTGAACTACTGCTCGCGCGCGTGTCAGGCGCTGGATTGGAAGCTCCGGCACAAGGTGGAGTGTG CTGCCCCCATGGAGCGGTTGCTTGATGATGACGGCGATGACGCCGGGGAAGGCGTCGGTGACGGCGAGGTGGAGGTTATG GAGGATAGTTAGAGCAAGTTAGACCATTTTTCCCGAACGGTGACGCCGGAAGGTAACGGTAGCGGTAACGGAAGCATGTT TGGAACGGAACAAAAGTGATTTTTTTTTGGTGAGGAGTAAATATGGAATTACATAGCTGGAAAATTCCCCCGAAAAAGGA ATGGGAATAATTTTCCTTTTTAAACTTTTTGTGCAATCATCAGATCAGAGTTTAACATTTTTAGAATTTAAATTGTTCTT TGATGTTTTAAAATTTGGTATTAATTTAATCGCTCTGATAGTTATATATAAAGATTGATGCGTGATATTTAGTTATTTAC ACAAATATTTTCTTATTTAATTAAAATAAAAAATGAATATTAGTGTTTCAAAAAAGAATGTGATCTTATGTTACACTTAC ATAGTATAATATGTTTCAGTTTTGTTTTACACTTTGAGTGCATAAATTTATATATTTTTTATTCTGTTTCAAACTTACCA TTTATACATTTTTCATTCTATTACAAACTTACCATAATTTTTTTAAAAAAAATTAATGGCATATGTGAGGTGTTTTATTT TGCAATTTCATCTAAAATTAAATATTTCAAAATTTTGTTGACATGTGATTAAATATTAAAATTTAAGGCAATCTAATTGA AATTATGGATTTGGTGATGAGTGTCTACTATTTGAGTTCTAACATTTGCTTGAAAAGGGAATAAAAAGCCTATCAATGAT TTAAATGTAATCTATTCTGTTTTTTTTAGATCTCACAACCTGTTCAAAAAAAAGTTGACCTATCTATATATTCTATAATG AGTGCTTGATGAATTTAGAATATGCCTTATAAGTTGTGAACCCCATTACTGTATTTGAAATGCTTTGTTGGCTTAAATTC AAGAGATATTCTTCCGGCTATAGTTCATGAAGAATTAGGAATGTTGTTGGTGTTTTGATTTATAAAACTTTCTAATAGTA CTCCTTCAACTGGTCAAAGGCACATGCCATTGTTTATTGACTTTATCATAGCATTTGTAGAAAATATCCACAGAATTAAT ACACCTGATTTGATGGATTTATATAAATATTGTCAGCAAAATTGGAAAGTTGTTTTTGCCGCCTTTCAATTTAGCCTACA TTAATGCAAATAAATGGTGCGATTGTCTTGAACTAATATAGCTTTTATTTTCAGTTTTTTAAATACGCC
CDS sequence (LotjaGi4g1v0365800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACAAGAAGAGGACCATGTTATCCTCAAAACATGTGTTCCGATGTAGGTTTCCCCAAGAGGAAGAACGATTTGCA TACCCATATGCAAAAAGACTCCATTCTTACCCGGAAAAGGCACCAGAAGTCACCGACCGCCACCTCCGGTGACGACCATT TTGAGTCCTTACCGGATGACCTCGTTATCTCCATCTTGTCCAAGCTCAGCTCCTCCTCCACTTCCCCTTCTGATTTTGCC AGCGTTTTGATAACGTGTAAGAGATTAAACAGTTTAGGACTCAATTCTCTCGTGTTAGCAAAAGCCTCTTCGAGAATTTT CTCGATTAGGGCTAAAGATTGGTCGGAATCGGCGCATCGGTTTCTCAAACAGTGTGCAGATGCAGGGAATGTTGAAGCTT GTTACACTTTGGGCATGATTCGGTTCTACTGTTTGCAAAACAGGGGAAGCGGCGCGTCGTTGATGGCCAAGGCGGCGATT AGCTCTCACGCGCGTGCTCTCTACTCGCTCGCGGTGATTCAGTTCAACGGCAGCGGAGGGACCAAGAGTGACAAGGACCT CCGTGCCGGAGTGGCGCTTTGTGCCAGAGCGGCGTTTTTAGGACACATCGACGCGCTGCGTGAGATTGGCCACTGCTTGC AGGACGGGTACGGCTGCCGGAAGAATATTATAGAGGGGCGGCGTTTTCTTATTGAAGCAAACGCCCGGGAGCTCGCCGCC GTGATGTCCGCCGCGGATGCTAGGTTGTCAGCCTCCGACGCCGCTGTGAGCCGGTTGGTGACATGGAGCCTCCACCCGCA GCAACGGCACTTACCGTCGGTGGCGCCGCTGCTGAGCGACTTCGGGTGGAACGTGCCGGAGCCGGAGCCTCACCCGGCGA ACCGGTTCATGACTGAGTGGTTCGCGGCGAAGGATGATGTTCCAGGGCCGGGGTTAAGTCTCTGTTCGCACATGGGCTGC GGTCGGCCGGAGACGAGGAATCGTGAGTTCCGGCGGTGCTCGGTGTGCGGCACGGTGAACTACTGCTCGCGCGCGTGTCA GGCGCTGGATTGGAAGCTCCGGCACAAGGTGGAGTGTGCTGCCCCCATGGAGCGGTTGCTTGATGATGACGGCGATGACG CCGGGGAAGGCGTCGGTGACGGCGAGGTGGAGGTTATGGAGGATAGTTAG
Protein sequence (LotjaGi4g1v0365800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTRRGPCYPQNMCSDVGFPKRKNDLHTHMQKDSILTRKRHQKSPTATSGDDHFESLPDDLVISILSKLSSSSTSPSDFA SVLITCKRLNSLGLNSLVLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAI SSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAA VMSAADARLSASDAAVSRLVTWSLHPQQRHLPSVAPLLSDFGWNVPEPEPHPANRFMTEWFAAKDDVPGPGLSLCSHMGC GRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPMERLLDDDGDDAGEGVGDGEVEVMEDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 2.9E-179 | – | |
| PANTHER | 1 | 378 | 378 | 2.9E-179 | – | |
| MobiDBLite | 29 | 53 | 25 | - | – | |
| SUPERFAMILY | 45 | 108 | 64 | 6.8E-7 | ||
| Gene3D | 94 | 256 | 163 | 5.5E-19 | ||
| SUPERFAMILY | 116 | 233 | 118 | 7.98E-13 | – | |
| Gene3D | 312 | 363 | 52 | 9.7E-11 | – | |
| SUPERFAMILY | 314 | 361 | 48 | 1.19E-10 | – | |
| ProSiteProfiles | 317 | 359 | 43 | 11.058 | ||
| Pfam | 320 | 359 | 40 | 1.3E-8 | ||
| MobiDBLite | 368 | 389 | 22 | - | – | |
| MobiDBLite | 369 | 389 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0365800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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