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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0365900 |
| Transcript ID | LotjaGi4g1v0365900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151T630|A0A151T630_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi4g1v0365900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74551482..74552550) extracted from Lotus japonicus Gifu genome v1.2.
AGCATGGGTCAGCTGGGACACAGTGTGTAGGCCAAAGGAGCAGGGTGGGTTGGGAGTAAAAGACATTATAGCATTCAATA GAGCATTATTAGGTAAGTTGAGGTGGAGGGTGTTGAGTGAGAGATAACTTGTGGGGAAGGGTTCTTGGGTCGAAGTATGG GGCTGGAGTATGGGTTGGTGAAGAGTTATGCTTTGGGAAGGGGTCAAATTGGTGGAAGGATCTAGGGATGATCGGGGAGT GCAGTGAGAAGGGGGGGGTGGTTTCAAGAAAATTTGAAGAGGGTAGTGGGGGATGGCGGGTCAGTAAGGTTTTGGGAGGA GCGCTGGGTAAGAGGGGAATGTCTTAAACAGAAATTCAAAAGGTTGTATGACATGTCTGTTCAAAAGAATTGTTTAGTGG CGGAGTTGGGGGAATGGGGGGTGGAGGGTTGGGTATGGAAGCTAAGGTGGAGAAGAAATATGTTTGCGCATGAGCAGCAG ATTTTAGATAATTTAATGCAGGTTTTATCTTCAGTTCAGATCCAGAGAAATGTGAAGGATTCTTGGCAATGGAACAATGA TCCGGAGCGACGATATTCAGTGAAATCAGCATACTTGGATCAGTTTACTCATGAGGACAGCTACTGTTTTTTCAAAGAAG TGTGGCGAGGTCTGGTTCCTTCTAAGGTTGCTTGTCATGCGTGGAGGGTTGCACATGGAAGGCTACCAACGTTGGACAAT CTGATTCAGAGGGGAGTAGATATGGATAACAGTAGAAGTGGCAATTGCTTTCTTTGCTCCCAACAATTGGAAAATGTAAG TCATTTATTCTTGGGCTGCAAGTTCTCATATAAGATTTGGATGAGCTACTATGCATGGTTAGGGATAAAAACAGTGCTGC CAGTAGATTATAATACTCACTTTATACAAAATGAAAACTGGGGTAAAAATAGAAAGCAAAGGTTGTGCTAGAGGACAATT TGGCTCGCCGTTATTTGGAGCATTTGGATTCATAGGAATGCAGTGGTCTTCAAAAGGGAACAATTGAATCTGGAAGAATT AGTAGAACTGGTGAAATTGAGATCCTGGT
CDS sequence (LotjaGi4g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTCAAAAGAATTGTTTAGTGGCGGAGTTGGGGGAATGGGGGGTGGAGGGTTGGGTATGGAAGCTAAGGTGGAG AAGAAATATGTTTGCGCATGAGCAGCAGATTTTAGATAATTTAATGCAGGTTTTATCTTCAGTTCAGATCCAGAGAAATG TGAAGGATTCTTGGCAATGGAACAATGATCCGGAGCGACGATATTCAGTGAAATCAGCATACTTGGATCAGTTTACTCAT GAGGACAGCTACTGTTTTTTCAAAGAAGTGTGGCGAGGTCTGGTTCCTTCTAAGGTTGCTTGTCATGCGTGGAGGGTTGC ACATGGAAGGCTACCAACGTTGGACAATCTGATTCAGAGGGGAGTAGATATGGATAACAGTAGAAGTGGCAATTGCTTTC TTTGCTCCCAACAATTGGAAAATGTAAGTCATTTATTCTTGGGCTGCAAGTTCTCATATAAGATTTGGATGAGCTACTAT GCATGGTTAGGGATAAAAACAGTGCTGCCAGTAGATTATAATACTCACTTTATACAAAATGAAAACTGGGGTAAAAATAG AAAGCAAAGGTTGTGCTAG
Protein sequence (LotjaGi4g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVQKNCLVAELGEWGVEGWVWKLRWRRNMFAHEQQILDNLMQVLSSVQIQRNVKDSWQWNNDPERRYSVKSAYLDQFTH EDSYCFFKEVWRGLVPSKVACHAWRVAHGRLPTLDNLIQRGVDMDNSRSGNCFLCSQQLENVSHLFLGCKFSYKIWMSYY AWLGIKTVLPVDYNTHFIQNENWGKNRKQRLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 171 | 148 | 5.5E-28 | – | |
| Pfam | 68 | 156 | 89 | 2.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0365900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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