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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0367000 |
| Transcript ID | LotjaGi4g1v0367000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|I3T9V3|I3T9V3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0367000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74685133..74687217) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCCAGACGCGTTGGCAAAGGCATTTGTGGAGCACTACTACAGCACCTTCGACGGCAACCGTGCCGGACTGGCGAA TCTCTACCAGGAAGGTTCCATGCTGACCTTCGAGGGTCAGAAGATCCAAGGCTCCACCAACATCGTCGCCAAGCTCACCT CCCTTCCCTTCCAGCAGTGCCTCCACTCCATCTCCACCGTTGACTGCCAGCCCTCCGGCGTCAACAACGGCATGCTCGTC TTCGTCAGCGGTAATCTCCAACTCGCCGGCGAGCAGCACGCCCTCAAGTTCAGCCAGGTCCCTTACCATTCACTCACTTT TTCAATTTTAAGGGTTTCTTCTTCTTTTCGATTATCGCCGTTGATTCATTGATTCATAACTAGTTGCTTGCTGCCTTTAA TTGTTCGTAGTATATAGTAATAATCGTCGATGATGTTTGATCTTAGAATTGATTGACTGTTGTTTGAGAAAGCTAAATCC CTGGTTCTGAATACTGTGTTCAAGTTTCCTAGATGCTATTGAATTGAAGTACTCTTATTCATCATCTTGGCCAGAGGAAA ATGCTTTGTATTCAATGCTGAAATTTGAATCTATATTGCAAATTGTGATTTGGTTTGTTTTTTCACTCAATATGAGAGGA GTGTTTTCTGTTTTTAAATTCCCTTAGCTGAATGAATACTCTCTTTAAACTGCTATGTATGAAGATTTTTGAAAATGATA CTCACAAGCAGGAACTGGGTGTAAGTAAGTGGGGAGTGTTCTTTCCGAAATTCTAGGGGCCAAGTCCTCAGGGTTGTTAA TAGCGCGCTATAGCGGCGCAATAGCGCTGTAGCGTAGCGCCCTGGGGGTTCACCGCTACTCCACTGTTCACCGTTATTTG CCGCTATTCTCGAAATAGCGTTTTTTGGGCTTGCCGCTACACTACGCTATCCGCCATTAACAACCCTGCTTGTCCTAACA TCCAGAATCTGTATTCGAGTGAAGATGCCTGTTCTTTGTCTTTTTCATTCTCTTAGAAGCTTCTTTGTCTTTTAGTCTTT CCACTTTAAGTAGTTATTGAACTGTTCCTTGCATTATTGTTTTATTTAATAACTGGTTAATGATATAATGGTTCTACTCA TTAAGTAGACGTCACGATCTCTCTTCAGCTTATGGCCCTTCATGCTAATTCGTAGCTACGTCAGCCTATCACAGCCTAGT GGTGAATGACTCCCATACTTTGGCTGATCAAGGTGCTAAATTACCTCGGCATGCACAAAGCCCTTCAAATCCTAAGCATT TTGCTTAGTGTACTTGTTTTTATGCTAGCCTTGGACATCATTTGACTCCTCCCACATTGAGTTACATGCTAAATAACTCA GGCATGTATACTATCCTCCAAGTTCTGAGAATTTTGCTTACTGGACTTGTTTTTATGCTAACCTCGGATATCATTCGACT CCTCTCACACCGAGTTAGATGCCATGTCACTCGACATGTACAGTCAGCTTTTGTAAGCCTTTATTGTTATGAAGGGAATA AAATTGAGATTTCTAGGAATGTGAAGGGTGTGTTTTGTTATACATCTGCACACACACTTCAGTATAGAAGTTAACGAAAT TCTACTGATGGATTGACATGGAAGTTTGTTCATGACTTCATGTTGCATCAACTAGTGTTCAAAGACACAGTTAGGCTTCA CGCTTGCTATAGTAGTACACTATATGGTCATAGTATTAGAAATATCAATGCTTTTACTGAGATGGTGATATAGCCATCAA CTAGAGGTGTAATATTTCTTTTGTCAAAATGATGTTTCGTATAACCCTAAAGATAGTTCAGAATTAGATGGTTAACTGGT GAAATTATGGGATAGCCATTAACTTATACGAGTAATAGTATATTTTGCTTTTCCTGTGTTGATAGAAATATTCATTGTAT TCTGGTGGGCTCTTACCTCTCTTTTTTCCCCTGCTCTGGTTTGTTCTTCCCTATATTTTTTTTACTAAACTTGTCTCTCT CTGTTTGCAGATGTTCCATTTGATACCAACACCGCAAGGAAGCTATTACGTATTGAATGATGTCTTCCGTCTGAATTATG CTTGA
CDS sequence (LotjaGi4g1v0367000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAGACGCGTTGGCAAAGGCATTTGTGGAGCACTACTACAGCACCTTCGACGGCAACCGTGCCGGACTGGCGAA TCTCTACCAGGAAGGTTCCATGCTGACCTTCGAGGGTCAGAAGATCCAAGGCTCCACCAACATCGTCGCCAAGCTCACCT CCCTTCCCTTCCAGCAGTGCCTCCACTCCATCTCCACCGTTGACTGCCAGCCCTCCGGCGTCAACAACGGCATGCTCGTC TTCATGTTCCATTTGATACCAACACCGCAAGGAAGCTATTACGTATTGAATGATGTCTTCCGTCTGAATTATGCTTGA
Protein sequence (LotjaGi4g1v0367000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPDALAKAFVEHYYSTFDGNRAGLANLYQEGSMLTFEGQKIQGSTNIVAKLTSLPFQQCLHSISTVDCQPSGVNNGMLV FMFHLIPTPQGSYYVLNDVFRLNYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 105 | 105 | 3.6E-28 | – | |
| PANTHER | 1 | 82 | 82 | 2.6E-57 | – | |
| PANTHER | 1 | 82 | 82 | 2.6E-57 | – | |
| CDD | 2 | 104 | 103 | 4.91873E-37 | ||
| SUPERFAMILY | 4 | 103 | 100 | 9.32E-31 | ||
| ProSiteProfiles | 6 | 102 | 97 | 20.871 | ||
| Pfam | 7 | 80 | 74 | 1.5E-20 | ||
| PANTHER | 82 | 105 | 24 | 2.6E-57 | – | |
| PANTHER | 82 | 105 | 24 | 2.6E-57 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0367000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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