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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018222
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.781s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023780.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Cicer arietinum] gi|502091361|ref|XP_004489526.1| chr1 34497602 34503034 -
3 domain predictions
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Lj1g3v3023780.2
n.a. PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Cicer arietinum] gi|502091361|ref|XP_004489526.1| chr1 34497602 34503034 -
3 domain predictions
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Lj1g3v3580500.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 1-like [Cicer arietinum] gi|502171371|ref|XP_004515039.1| chr1 41063888 41068464 -
3 domain predictions
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Lj1g3v3580500.2
n.a. PREDICTED: ras GTPase-activating protein-binding protein 1-like [Cicer arietinum] gi|502171371|ref|XP_004515039.1| chr1 41063888 41067683 -
3 domain predictions
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Lj1g3v3580500.3
n.a. PREDICTED: ras GTPase-activating protein-binding protein 1-like [Cicer arietinum] gi|502171371|ref|XP_004515039.1| chr1 41063888 41066959 -
2 domain predictions
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Lj1g3v3580500.4
n.a. PREDICTED: ras GTPase-activating protein-binding protein 1-like [Cicer arietinum] gi|502171371|ref|XP_004515039.1| chr1 41066401 41068218 -
3 domain predictions
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Lj1g3v4518310.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 2-like [Cicer arietinum] gi|502110205|ref|XP_004493824.1| chr1 53267261 53273301 +
3 domain predictions
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Lj2g3v0934140.1
n.a. PREDICTED: mitogen-activated protein kinase kinase 6-like [Glycine max] gi|356511672|ref|XP_003524547.1| chr2 14971272 14975893 +
2 domain predictions
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Lj3g3v3261490.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Cicer arietinum] gi|502143480|ref|XP_004505357.1| chr3 40185967 40190450 +
3 domain predictions
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Lj4g3v0669750.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Cicer arietinum] gi|502143480|ref|XP_004505357.1| chr4 11200166 11205038 +
3 domain predictions
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Lj4g3v1720850.1
n.a. PREDICTED: ras GTPase-activating protein-binding protein 1-like [Fragaria vesca subsp]. vesca] gi|470126648|ref|XP_004299295.1| chr4 24737575 24751467 -
3 domain predictions
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Lj6g3v0086460.1
n.a. Ras GTPase-activating protein-binding protein [Medicago truncatula] gi|357439835|ref|XP_003590195.1| chr6 1151235 1158218 +
3 domain predictions
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LotjaGi1g1v0513200.1
n.a. RNA binding protein, putative; TAIR: AT5G60980.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|I1KWF6|I1KWF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0513200 LjG1.1_chr1 103523591 103529523 -
3 domain predictions
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LotjaGi1g1v0591700.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161748 113167086 -
3 domain predictions
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LotjaGi1g1v0591700.2
n.a. RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161748 113167086 -
3 domain predictions
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LotjaGi1g1v0591700.3
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161975 113167066 -
3 domain predictions
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LotjaGi1g1v0704000.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G43960.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MYR4|K7MYR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704000 LjG1.1_chr1 127211189 127220442 -
3 domain predictions
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LotjaGi2g1v0242400.1
n.a. Kinase-like protein; TAIR: AT5G40440.1 mitogen-activated protein kinase kinase 3; Swiss-Prot: sp|O80396|M2K3_ARATH Mitogen-activated protein kinase kinase 3; TrEMBL-Plants: tr|A0A1J7HHU4|A0A1J7HHU4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0242400 LjG1.1_chr2 70542281 70547175 +
2 domain predictions
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LotjaGi4g1v0087400.1
n.a. RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A0S3R2J6|A0A0S3R2J6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 LjG1.1_chr4 11621194 11626717 +
3 domain predictions
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LotjaGi4g1v0087400.2
n.a. RNA binding protein, putative; TAIR: AT1G13730.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A1J7G1P1|A0A1J7G1P1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 LjG1.1_chr4 11621257 11626446 +
3 domain predictions
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LotjaGi4g1v0255500.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G60980.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2; TrEMBL-Plants: tr|A0A151SPE4|A0A151SPE4_CAJCA Ras GTPase-activating protein-binding protein 1; Found in the gene: LotjaGi4g1v0255500 LjG1.1_chr4 60934628 60942781 -
3 domain predictions
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LotjaGi4g1v0367000.1
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|I3T9V3|I3T9V3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0367000 LjG1.1_chr4 74684960 74696818 +
3 domain predictions
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LotjaGi4g1v0367000.2
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|I3T9V3|I3T9V3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0367000 LjG1.1_chr4 74685133 74687217 +
3 domain predictions
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LotjaGi4g1v0367000.3
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|I3T9V3|I3T9V3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0367000 LjG1.1_chr4 74685133 74687217 +
3 domain predictions
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LotjaGi6g1v0010100.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G43960.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A0L9TV93|A0A0L9TV93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0010100 LjG1.1_chr6 1877703 1885063 +
3 domain predictions
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LotjaGi6g1v0101800.1
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|A0A072TT57|A0A072TT57_MEDTR Nuclear transport factor 2; Found in the gene: LotjaGi6g1v0101800 LjG1.1_chr6 22374185 22377153 +
3 domain predictions
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LotjaGi6g1v0101800.2
n.a. Nuclear transport factor 2; TAIR: AT1G27310.1 nuclear transport factor 2A; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|I1LN66|I1LN66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101800 LjG1.1_chr6 22374369 22374804 +
3 domain predictions
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LotjaGi6g1v0101800.3
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|C6TFP4|C6TFP4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0101800 LjG1.1_chr6 22374369 22376297 +
3 domain predictions
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LotjaGi6g1v0101800.4
n.a. Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|C6TFP4|C6TFP4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0101800 LjG1.1_chr6 22374369 22376297 +
3 domain predictions
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