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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0367300 |
| Transcript ID | LotjaGi4g1v0367300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G27290.1 transmembrane protein; Swiss-Prot: sp|B4SKS3|Y716_STRM5 UPF0761 membrane protein Smal_0716; TrEMBL-Plants: tr|G7LH97|G7LH97_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi4g1v0367300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74701603..74706733) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGATAAGATCCATAAGGCCCACGTCAGTCGGACCCACACAATTACCCTTTTTCCCCACGTTAACCCCACCTCCAAC TCCATCTCATTAATTTAATAATTATGCATTATTGCAGCCTACTATTAGACGACGTGTACCCAGCTATAACCAATCTCATC ATCTCAATCCTCATTCCTCCTCACAATCACATCATTCATTCATAACACCCTCTTCCTCCCCAAACCTTCACGCAACCAAC CCAGTTTTTTCTTTAACGCAACCAAACAAAGCATTCCCCATCATTCTTCACCACTTTCTGAAGCACTTTCCGTTTCAACT TCCCTTCCTTTCAACTCCAACAAGGAAAACCACAACAATTCCTAACAAACCAAACAAAACAAAGCTTGTAATAAATCATC CATTTTCCTTCCCCACCTTTATCCAATTCCATTCATCCAATTTTCCTTCCTCTCCAATTATTTCCACCGACACACTTTTT CTTTCAATTTTCCCTCTGAAGAGAGAAAAAACAATAACATGATGAGAGGACAACAACAACAGCAAGATCAAAATTCCAGG GTTTTCTGCGAGCTTTCAGCGCTCGTTTTCAACCTCCTCCGCTCTCATCCTACGCCGGTGTCCTTCCCCGATCGAGCTCC GATCGTGCCGGTGCGTCCGTCGGAATCTCCTCTAGCCAGGCGTTCGTCAACCGCGGGACAGATTACGCCGGCGGGGTTTG CTGCTCTGCTTCTCGGGATTTCGGTGTCTCTGATGCTGTGTGGATCGGTTACGTTCTTCCTTGGGTTCATGCTCATGCCG TGGGTTATTGGATTGGTGATGGTGTTGTATGTTGCTGGCGTCGTTACCTCCCTCTCCGTTATCGGTCGCTCCATTTTTTA CCCGCGGAAGGATTTTCCTGGTAAGGAAGGAAGGGTTTCAAATTCAATCATTGCTTTTCTTGCTGCAAAATTTTACATGA TTTTGGAATATGAGATGTTATTTGGTGTGTGAATTTAGCTTTATTTGAATTGCATAAAAAGTAACAAAATTATGTGTGAG AATTGTGAGTAAACCTCTTAGCATCAGGGTTGTTAATGGCGGCAAGCCCAAAAGACCTATTTCGAGTGCTATTGCGGTTG CGGCGCTATAGCGGACAATAACGACAAATAGCTGTGAATAGTGGAGTAACGGTGAACCCGCAGGGTGCTACGCTATTGCG CTGCTATAGGGCGCTATTAACAACCCTGCTTAACATATTGAAAAAAAGTGATTCCAGGATTTGTCCTGATTTAAGAATGA TAGTGGACCCATCATCTATGGTCAAATTATCTGTTTTTTCCCATGTCTGTGTTTTTTAGCCTTGTGGGGAAGCTTGACTT TTAGCTTTCCCTTTGACTGTTTGAAAGCTTTCCAGTTTTACAAAGAAATTGGAGGAAGAGTAATGAATTTTTGGGATGTG CAGGTGGCCTAGTAAATTTCATGCTAGAGATGTAGACATAGTATTACAAATTTGTTCTCTTTGCACTTTTTGAGGACTTG GTCTAAGACATGACCTTTAATTGGAAACTTCATGATTGAATTAAATTTTGGGAGCTGAGATATATACACAGAAAAAGTGC ATGTCAAACTCTTCCAACAAAGCTTAAATCAGTGGATAAAATTGTTTGTCACTGGAAATAACTTTGATTGATTCTGTGAG GAAGCTCTCGGAGTTGGTTCTGATCATAGAAAAGCTTATCTAGACATGTTATTAAAACTTCAAACCATTGTTCTATTTGA CACCTGTGCTTTTAGCTAGCATTTAATGTAATGTAAGCATATGATTACATGACATGCTAAAGGCTAAATTGTTTGAAATC ATCTTATAACTTTAAACTTCAAAGGGAGTTGTTATTTAAATTTTTGTTTGTTGTGGTGGTGAATCTTTCAAACTGTTAAA GATTAGGATTAGGATTTTTGGTTTGGCCTTCAGCAATGGTATTTTTCTTCTCACCTCTGGTTTGTTTGAGCTTTATTAGG GTTAAAACTTAAAAATAAAAACTTTTCACTGGCAACATGTTACTTGTGCGCCTTAATTATCCATGTTTAAAATTTTTGGA CACAAACGTGACGATCCTTCATCGTTTCAAACTTTACTTATTTTCCCTCTGATATTGGAAAATTTTGCTGAACTTATACC CATAAATATGTTTATCTTCTTTTATTTATAATCATGGTTGGAAGACATGTATTGTTGCATGTGCAAGATTGGTGCCTCAC ATAACCACCAGGGCAGTTGTAGACTTTGCAATACCCATATAAGAGATGGATCAGCTACATTTCAGTGTGATCAGCTTGTT TGATTTAGAATTTCTTATTGTTAGAATCGCCTATGAAAAAGGGAAAGTTATTGTTAGCGGCTTATGATTTACTGAGTAAC TAATACACCACTCGCATAATAGTTTCCAAACCTGCATGATGTAGTTACTGCGTTTTTATTATTTATCAGAAAGGGTGTAG CAGAGTTGCAGTCTAACAATAGGGAGTGTGTTGTAACATTTTCTTCATTCGTGATTTTAGGTTATTGCAGTTTTTTTTAA AAGGGTTTATATTTGTATGTTTGACGCTTTTAGGCCTCCACACTATGTGTAAAATTGTAGCTGGCTTTAATTCATAACCC AATTCGATAAGTTAATATAGTAATCCTTATAGAAGCTTGACTCAAATAAGACGGTGACATGGTTTTCATTATCTTGAGTT TATCATTTCTGCTGTTTATTTTGACTTGACTATGCAGCTTATCTCTTTGATTGTATCACTCTTTTTTTATCGTATCATGT GCATATGACATCATTGCAATTTTTTGCTGATGCAGAGTGGAAACTTATATGAAGAGATAAACAAAGGAAATGAGCAGCAT GTTGCTGGTTTTGCGCCTGCTCGTGCAACCTATAGAACAGCGAAAAACTTCTCTTGTTAGAAGCATGAATTGGGGACAAC GGGCTTTTCTTTCAAGTTGCCAAAATTTCTGGGTACGACTTCTTTGTTGATTACATAGAGCGAAGTAAGTTCTGAAAGCT CTTAGAATTGAGTTGTTCCCAGCTTCTTTCTTCTGTTATCATTATTCTATTTTATATCTTTATGATAACACCTGTAAATT TGAATTATAGGCATTTGAATTTCTTTTTTTCTTTTTTCCCCTTTCCAAACATGTTATGTAACTATATATACTATAGAAAG AAAGGGAAAATATGATTTCCCTCATTAGAACAGGGCTGTAATGGAGAAGTAAATTTTGGATCAGATGATCACTCCTGACA AAGCATCCAAAATTCTTTATTTTATATTACCTTACTGTTATTGCTGGTTTGTTGATGTAGCTTAACGTCTTTTTCCCTAA AAGATTTTGAGAAAGGTGTACGCCACGTTTTGAGGGAGAAACTATAATAATGTGTAGCCAAAATTAGCTTTTTCTTGTTT AAATAGGTTTCCATTACTATAGCTTGTTTTCTATAAATTGTGTAAGCAATTAAATTAGCAAATTATAGTTGAAACATGAA TAAAATCCAGATAATGTAAAGCAACAAGGGAAGGGAGTGGATTTCTTTGTTTGGACTAGGAACATAGATTGATGTTTAAA CTTGTGGCCATAAATATAAGTGTAAAACCTGTGAGAAAGTTCTTCAAAGTAAATTAACTTGGGTCCAAACACAATTATTA TTGTTTATATATGTGTTTGATTTGAATTAAAATAACTTGACTTTCAAAAACAAAAGAATTAAAATAACTTTTAATTTACT TTCAAAAGTGGGCATAAACGTCAACTGAAAGCTCCATTGAAGCTTTTCAACCGGAGATACAAACTTTGTTGATTGGTCTG GTCCAACAAATGAAATCAATATGCAAGAATTTTTTTGGGTCAAATACAATACAATATGCAAAAAACAGGGAGATTTAAAA AGAAATAATTGCAATATGCAAGAATAAAAGCACAACTTGCTTGATGTTAGAAAAAAAAGAATGTCACGGCTTGGTTTTAA AAAAAAATTATAACACAACTTACACACCAGTCCCTATCTTTGTAATCCGCATAACAGGTATCAAATATGGTCCAAATATG AGGTTTGGTTGAGGGAGACAATGGAGGCTTGAGTTCTGGATTTTGTCACTATTTTGAGATTTTTTGTTTTTATTTAACTT TTACTTTTATGATTTTAAGAGAACATTAATTATATTTGGAAAAAATAAGCCCAACCAAGATCACAAGTGTGATTGGGCAT GAGGTATCTTCACCAATAAACTCTTAAAAATGGTGATCTAGAATAGAAAATTACTGGTGCATTATTAGCTCAATCCACAA TACTAATTCTATTGTTGAAAATATATTCCTACAATGAATTGTCAAACTAAAATTAATATGTTGAGAAACTTAATTATGAG AATAGAGAACTGATCCAATGATACTATATGAGGAAAGAGAAGCACAAACTAGTATGCCATGAGAAAAGAAGCTCATGACC GATCCTCAATTGCTTCATAAAAGTACATCACAAGTAATTTAAATGAAAATAACAAAAATTAAAAACGAAAACACCACAAC AAGGATGGAACACAACAATAAATAGTGGTACATGTCAAAGGAGGTGATCATGAATAATTATCCTGAGTAGATATGCACCC CAACTGCAAGTAGAAAGATGGTGATGAGTCCAAAGAAGATGATGGTGTGGACCAAGATAGAAAGCCCACTAGTTTGCATG CTCCCAAACGCCACCACCTTGCCCCTCCCCGGCAGCTGAAACAGCAGCCCTGGGCTCAGTAGTACAAACAACACCACCGA GATCACCACCGGACCCCAATCTGCCGCCATCAAACCTTAATTGTCTCAAACAAATAAATAAAAATAGTAGTAGATTGCTA GCTAGTACACCCTGATAGTGATAACAAGTTGTGTTCAATAATTGATGTGTGGCTCAATCGATCTATGTAAGCTTGTTATA TAGGAAACTAAAGGAGGATGATTCTAATGTAGGTCTGAGGAAATTGATTGAGGGTAACAGAAGCAAGGAATAAATTACAA GTAGAAAAAAGAAGCAATCTACTAATTAATTGAAAGAACACATAAAAAGTATAGATTGTAAGTGTTTGTGTGTGTCATAT ATTCGGTGGGG
CDS sequence (LotjaGi4g1v0367300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAGGACAACAACAACAGCAAGATCAAAATTCCAGGGTTTTCTGCGAGCTTTCAGCGCTCGTTTTCAACCTCCT CCGCTCTCATCCTACGCCGGTGTCCTTCCCCGATCGAGCTCCGATCGTGCCGGTGCGTCCGTCGGAATCTCCTCTAGCCA GGCGTTCGTCAACCGCGGGACAGATTACGCCGGCGGGGTTTGCTGCTCTGCTTCTCGGGATTTCGGTGTCTCTGATGCTG TGTGGATCGGTTACGTTCTTCCTTGGGTTCATGCTCATGCCGTGGGTTATTGGATTGGTGATGGTGTTGTATGTTGCTGG CGTCGTTACCTCCCTCTCCGTTATCGGTCGCTCCATTTTTTACCCGCGGAAGGATTTTCCTGAGTGGAAACTTATATGA
Protein sequence (LotjaGi4g1v0367300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRGQQQQQDQNSRVFCELSALVFNLLRSHPTPVSFPDRAPIVPVRPSESPLARRSSTAGQITPAGFAALLLGISVSLML CGSVTFFLGFMLMPWVIGLVMVLYVAGVVTSLSVIGRSIFYPRKDFPEWKLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 64 | 64 | - | – | |
| PANTHER | 2 | 125 | 124 | 2.8E-50 | – | |
| PANTHER | 2 | 125 | 124 | 2.8E-50 | – | |
| Phobius | 65 | 89 | 25 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 90 | 94 | 5 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 95 | 115 | 21 | - | – | |
| Phobius | 116 | 132 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0367300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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