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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0367500 |
| Transcript ID | LotjaGi4g1v0367500.1 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT1G24260.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog; TrEMBL-Plants: tr|Q533S6|Q533S6_LOTJA MADS box protein SEP3; Found in the gene: LotjaGi4g1v0367500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74708441..74714647) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCAGCAAAACCGCCTTGGCCACTTACAATCCATTACATTGGTTTTAATTTCCACTGGGCGCGTCATTGTCACTGAGT TAGCATTGTGTTAAACACAGCACAGGGTGATAGCAGAGAGAAAATGACAGGTAGAGAGAGAAATTAAACAATTACAAAGA GATATAGAATTTGATTTTGGAGTTTTCATTTCAATTCAATTAGGGCTTTGATAAAGATGGTTTTGCTCACTCGGAATCTT AATAATATAATAATTTGTGGTTGAGAACTATATAATTATATAAATACACAGTTACACACATATATACATGTATACGACGT TACAAAAATATTCACATATGTATTTTTTGTGATTGGATATTTGAGTACTAACTGTGAGAGAAGGGTGAGAAAGAGAGAGA AGAGAAGAAGAAGAAGAAGAAGAGAGAGATGGGGAGAGGAAGAGTGGAGCTGAAGAGAATTGAGAACAAGATCAACAGGC AAGTGACCTTCGCTAAACGCAGGAACGGACTATTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCGGAGGTTGCT CTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGGTATATATATATATGTGTGTTTTTCAA CAAAATGCAACCACCAAAAAATAAATTAATGCAAGCACATAAACATACAAGCACAGAAAAAGGAGGTGCAGAACCTTTCT TTTTCTTGTTAACCAAACTTTTATTATTGTATATATTAAATATTTTTATCGATCTTTGAGAGATCTTTGAGTTTTGAGTT CATTTGATTTTTGCTGTTTTGAGACACGCTATGGAGTTTGCTATGTTCTGAATTGTTAGTATTTTTGAATGAAATTTTTT TAAAAAAAAGTTGTTGATTTTCTCTTTTTCACTGTTGGAGTTTTTTCCGTTTCTGTGAATGTCTCGGCGTTTTTAGCAGG TTGAGTGTTTCTGAGATCGTATGCTTGTTAGATCTGCATCTGGAAACGCCTTAAACTCTCAAAAGAAATCAGAAAATAAC CACTGTTTTATTGTATTGTATTGTATTGTATATATGTATAATATATTCTCTCTATTTTATTTTTTATTTTTGTAGTCTCT GCTGCATTGGCTTCAACTTTCTCTTTCTTTCCCTCTTTTGGGTTTCAACCCAGCCTCTGAACTTTCCATTTTATTGCTTC ACCAGCGTTGGAAACAGATCTGGTTCAAAAGCCTTTCCCAAAAGTGATTTTGGACTCTCTGCTCAGACTTCTTTTTCGTG TAATTTGGTGTTGGGTGAAACAAGCATATAATCAATTATCTCTTCCAGTTTGGAGTTTTACCACCTAGCTAGTTTGCTTT TGCCTTCCATGCTCACAAATCATCAAAATCAGTACTCTATTCAAATTACACAACACCTAACCCATCTCTCATTTCTTCAC TCCAAAATAAACCCTCTCTTCTTCTTCTTCATCTTCCAAAAAAAATGAGCTGCATATCCAGAACTAGGGTTTCTTTCATC TTCTCCAACTTTAAGCTTTTTTATTTTTTGAAATAATTTCTATATTTTTCTCCTTTTTTATCATTAATTTTCTATGTCAT TGGTATTATGATGTTTTCAATTTTGTTAAATCAGAAATGGTCTTTTCTCCAGTGGATAACATTTGACCTCTATCTGTTCT TCTCCTTCATGTTTATATACATGGTTTTCAATCACTTCAGTCCCATCTATCTATCTATCTATCAGATATCTATTGATTGC ATTTTAAACTTTTCCAGTTTGTATCTTCTGAAGCTTTCTTCATATTCTCCTTTGGAAACAACTCTGACCCTTTTAGATCT GATTGTACCAAAGGTTCTTTGAGTTAATTTGTTCAATGTAGCACTCCACATAAATGATCCATTCCCTTATAAATCCAAAG AACACCCTTTTCCTCTTGCTCTCTTTGATGTCACATTTATCAATGGAAGCAGCCTCTTATAATCCTGGTAAAAAAAATAT CTCTTACCATTTTTCAGTAGATTATAAATATTGATATAATTAATACTTGAGTAGCTTGCAATCTTTAAGTAGCACTTATA ATTTCTATGGAATATGAAATTCTGTTCTTTAATTGTTTGATAATAGCCCTAAAATATGCTTGAGTTATATAGTAAGAACT TTTACTTCTTGTTTCTCACTGTTTATGTTTTTTTTGGGTTTAATTCTAACTTAGGTTGATTAAATTGATTGCTTGGGAAA ATGAATTATTTATATCTTTTATTTTAATTTTAAGCAATTATTTATATTTGTATAATGAAGTTTTACTTAGTTAATTTTTT GGATAATGTGTTGCAGCATGCTGAAAACGCTAGAAAGGTACCAGAAATGTAACTATGGTGCGCCGGAAGCTAATGTGTCT ACACGGGAAGCCTTGGTAATGCTGAATAGTTCCTTGTACTCTATATTTAATTACATAACTTGCTTTGATTTATCACCTTT TGATTTAATTTTTTTTCCTTAAGTTATAATGGATTGGGATGCATCCTTGAACATTTTCATTAGCATTTTCACTAATATCA TGATATAAAGTATATATATATTTTTAAATCATATATGATATAAAGTATAGTTAGTTCAGCTTATTGGGGTTTATAGAAAG AACCATAGTAAAATAAAATATGGTTGATTTTTTCTTTCTTTTTTTCATTTTTTTTAAGGGATTTTTTTTTTCATTTTTAG CTAATATATTGTACACGTGATCATAAAAAGACTAGGTTGCGTGATAAATTATTTTAACTTTGAAAGGATTTTTGAAAAAA ATCTAAAAAATTGTTTTATGAAATTTTTATATATTTTGAAACCAAAAAGTAATTTCTATTTTTATAATTATTTACAACCA TGCCAGCTAATAAAGAATAAAAATAATCAAAGTATTTATTCAGGAATCTCATCTCATTGAGTACTTTAAAAACTTACACT GAAATAGGTTATCCAGCAGCAAAGCTGCATAATGTAACTCAGTACAAACACAAGGAAGGTGGCATTGCTATTTTTGGAGT CAGAAATAAAAAACATATATTCATACTAACCATAATTAATTAAGTTTGACATTCCCTCATATGTTGGAATCAGAAAAAGG AAGTATTAAATATTATAAGGAAAATTCTCCCATTTAGTGAGTCTCTACTAACTTTCCTAACATGTCATTGGTGTCCTACT TGATAGTTGAGAGGTATTTTATTTTTGCTGTACAACTTTTGTTAAAAAAATATTTTAAGGGTGTAAACTGTCATCCATAA TGCGCGTTTTCTGAAGCATTGCACTAGTCCGTTCCAATATAACGTGCGCTCGTCCCCTATCAAATTGCCGCGAATTTACT ATGTTTGCAGCTTTTTTGTAACCGTTACACTAGCCGAACATGTGGTGTACTCTAAACAACTTTTAAAATAAGTCTTATTT ATTGCAACACATGAAAATTGAGACTTTGAGTGCTTATTGTTCTGGGTTGGATCCTTGCCCCTTTGCTCAAACTTTAGCTT AATTTCTATCATCCCCTCTACATTAATTATCTGACCTCATTTCTAACAAAAAAAATGGCAAAGAGATTCAAATAAATTCT ATAAATTCAGGTTTATTTAGTCAATCCTCTTTGGCTTTTGTACCTCATTGTGATTTTAGGAAAAACTCTTCTCATGATAT ATGACTTTATATATCTGATATCTTCCATTGATTATATATGTTAGTATATTGATTTTGCAACTGTATATGAGTACTGTAGG AGTTAAGCAGCCAACAGGAATACTTGAAGCTGAAAGCACGTTATGAAGCCCTACAACGCTCCCAGAGGTACTCTATTAAT TTTTGATATACCTTTCATTTATATGTATGTGTGTGTGGGTGATAGATAGGGGTTGTCTAAATGACCCATGATAAAGTTTG GGTTATATAACCATCATCCAATCACATTGTAGATAAGTGAGTTGGAATTTTTATATTTTATTTATTAGTTTATTTCTAAC TCATCTATCTCAAATGCGATTGGATGATGGGTTATGTAACCCAAACTTTATCATGGATCATTGAGACAACCCTGATAGAT ATAAGTAGTCACTGATGTATTAACTTAATACCCTCTTAATTAGGAACCTTATGGGGGAAGATCTAGGCCCTCTAAACAGC AAAGAGCTGGAGTCACTTGAGAGGCAGCTAGATTCATCCTTGAAGCAAATAAGATCTACAAGGGTACCCAATTTCATTTC CAATTTTTGCTATTTTACCATCCATGAAAATTATATGCTTTCAAATTGCCTTTATTCTTTTGTTAGTGAGTTGTAAAGAC TCACGTATATAATCTCCAAGTAAAAATACTGTTAATTATTTGAGTTCCTAATGGAAAGGAAAGTTGACTGCATATAATTG TAAGATTAAGTGTATTTTATTTTTTGAGGTTGTTTCTTTTACAGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAA CGTAAGGTATGACAACAGTTATCATTTTCTTTGCAACCATTTGTTGTCTTCTTTTGGTCCGTAGTACTTGGTTTTAGTGT ATGTTTAGATACATGCCAAAACAAAAATATGTGGTAATTACAAAATTATAATGAGCAGTCAAAAAAACTACGAGAAATTG TGATTTTGGCTTCACTCTGGTTTTTTATCATGTATCAGTCATACATTTACTCATTGATGTGTTTACTTGTGTAGGAACAC ATGCTAAGCGAGGCTAACAGGTCTCTCAGACAAAGGGTACGTAAGAAACATCTCAACTAAAAAGAGTGTGTTGCTCATCA CTAAAATTGAATCAGCAATTACAAGAATCATTCATGATCTGAATAAATTGAAGATAGAGATCAATTGACCTGTCTTTCTT AATTGAAATTTAAATTGATGGGAATGAGTGACTCTGTTTGTTATTTAGCAGCTGGAAGGGTACCAACTAAACTCACTGCA ACTGAATCCCGGTGTTGAAGACATGGGATATGGCCGCCATCCAGCTCAAACTCATGGTGATGCCTTCTATCATCCAATAG AATGTGAGCCGACCTTACAAATTGGGTATGCACTCTTTCTTCACTCAATGCCATTGATTAGGTTCACAGTCTAATAGCAT GTTTGGATCAGCTTTAAATTCATTCAAAATCGATTCTATCAAGGTAGTAGAAGCATGGTATGTTTCTATTTTTCCAGTCA AGAAACCTAGAAGTCTTTTTTTCCAAAATTCATTATGGTTTCAGAGTCTATTGTATAAATGTTTCCAAACTTACACGTAG TTGTAGTTCGGTTCTAGTTCAAAATCAAAATAAGTTGGATTTCCAAGCATATCTTAGAAAATTTGTCAAATGATTCACCA ATTGCCTCAAAGGTGATTGGATGGTATTAGTGACCTATTCAATTGGCACAAATTTAAGGTAACCGCTTTTGCAAGGTATC ACATTATAATAATGTAGATAAAGTATGGGATTAAATATAGTATTAGTAGTGGCATAAGCTTCTCTTTACTCATGATCAAT TCCCGCAAACAGAAACTACTCACAACAATTTCTCCCCATAATTGATTATAACATCAGGATTATTTGTAGTAGGATTTTCA AACATACATTATATACAATCAATACAAATGTGGGGCCCTATAGTTGATTTGATTAGCATAGCCATGAACCATATTAAGAT TTAAGTTACTATTATTGTTTCTGAAAATGAGATTTGTTTAAGTGCAGTTACCAGCCTGATCCAGTGTCAGTGGTGACGGC AGGCCCGAGCATGAATAATAATTACATGGCAGGATGGCTGCCATAGCGGCTGGGGAAGCTATTGTGATGTTTCCGGCGAA AGATCAATCCACTCCACGAGCAAATTCACCGTTCCATTTTAATTTGAAGACAGGAAAAGGAAGAAACAAAAATGAAGAAA TTTGCTTTGGCATGTAATGGACTTGTAGTAAGTGTCTAATTTGTAGGAGCAACGTAACCAGTGTTGTTCTGTCTGTGTCT GTGTGCATGTGTGCTTTTCATAAAACTGCAGTTCTAGTTCTTCCCTTTATTATTATGATAGAAGAATAATAACAATAATT GCTTTCACCCAGTTATGATTGCTCTGAATTTGACACCAATGACCTGTAGGGGTTGTTATTATTAATAATTATAATTGTTA TTTTGAGACATTAGATTCATTCTGTTTTATTTATTTTTGATATGGGT
CDS sequence (LotjaGi4g1v0367500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGGAAGAGTGGAGCTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGCAGGAACGG ACTATTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCGGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAAC TGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACGCTAGAAAGGTACCAGAAATGTAACTATGGTGCGCCGGAAGCT AATGTGTCTACACGGGAAGCCTTGGAGTTAAGCAGCCAACAGGAATACTTGAAGCTGAAAGCACGTTATGAAGCCCTACA ACGCTCCCAGAGGAACCTTATGGGGGAAGATCTAGGCCCTCTAAACAGCAAAGAGCTGGAGTCACTTGAGAGGCAGCTAG ATTCATCCTTGAAGCAAATAAGATCTACAAGGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACAC ATGCTAAGCGAGGCTAACAGGTCTCTCAGACAAAGGCAGCTGGAAGGGTACCAACTAAACTCACTGCAACTGAATCCCGG TGTTGAAGACATGGGATATGGCCGCCATCCAGCTCAAACTCATGGTGATGCCTTCTATCATCCAATAGAATGTGAGCCGA CCTTACAAATTGGTTACCAGCCTGATCCAGTGTCAGTGGTGACGGCAGGCCCGAGCATGAATAATAATTACATGGCAGGA TGGCTGCCATAG
Protein sequence (LotjaGi4g1v0367500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEA NVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEH MLSEANRSLRQRQLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGPSMNNNYMAG WLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 60 | 60 | 1.3E-41 | ||
| ProSiteProfiles | 1 | 61 | 61 | 33.515 | ||
| PANTHER | 2 | 193 | 192 | 1.2E-103 | – | |
| SUPERFAMILY | 2 | 76 | 75 | 9.55E-34 | ||
| PANTHER | 2 | 193 | 192 | 1.2E-103 | – | |
| CDD | 2 | 76 | 75 | 2.21177E-46 | ||
| PRINTS | 3 | 23 | 21 | 8.6E-33 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 3.4E-26 | ||
| Gene3D | 13 | 78 | 66 | 1.3E-29 | ||
| PRINTS | 23 | 38 | 16 | 8.6E-33 | ||
| PRINTS | 38 | 59 | 22 | 8.6E-33 | ||
| ProSiteProfiles | 89 | 180 | 92 | 15.766 | ||
| Pfam | 91 | 172 | 82 | 9.1E-27 | ||
| Coils | 126 | 146 | 21 | - | – | |
| Coils | 152 | 172 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0367500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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