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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0367500 |
| Transcript ID | LotjaGi4g1v0367500.4 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT1G24260.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|O65874|MTF1_PEA MADS-box transcription factor 1; TrEMBL-Plants: tr|Q533S6|Q533S6_LOTJA MADS box protein SEP3; Found in the gene: LotjaGi4g1v0367500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74709511..74714219) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGAGGAAGAGTGGAGCTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGCAGGAACGG ACTATTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCGGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAAC TGTACGAGTTTTGCAGCAGTTCAAGGTATATATATATATGTGTGTTTTTCAACAAAATGCAACCACCAAAAAATAAATTA ATGCAAGCACATAAACATACAAGCACAGAAAAAGGAGGTGCAGAACCTTTCTTTTTCTTGTTAACCAAACTTTTATTATT GTATATATTAAATATTTTTATCGATCTTTGAGAGATCTTTGAGTTTTGAGTTCATTTGATTTTTGCTGTTTTGAGACACG CTATGGAGTTTGCTATGTTCTGAATTGTTAGTATTTTTGAATGAAATTTTTTTAAAAAAAAGTTGTTGATTTTCTCTTTT TCACTGTTGGAGTTTTTTCCGTTTCTGTGAATGTCTCGGCGTTTTTAGCAGGTTGAGTGTTTCTGAGATCGTATGCTTGT TAGATCTGCATCTGGAAACGCCTTAAACTCTCAAAAGAAATCAGAAAATAACCACTGTTTTATTGTATTGTATTGTATTG TATATATGTATAATATATTCTCTCTATTTTATTTTTTATTTTTGTAGTCTCTGCTGCATTGGCTTCAACTTTCTCTTTCT TTCCCTCTTTTGGGTTTCAACCCAGCCTCTGAACTTTCCATTTTATTGCTTCACCAGCGTTGGAAACAGATCTGGTTCAA AAGCCTTTCCCAAAAGTGATTTTGGACTCTCTGCTCAGACTTCTTTTTCGTGTAATTTGGTGTTGGGTGAAACAAGCATA TAATCAATTATCTCTTCCAGTTTGGAGTTTTACCACCTAGCTAGTTTGCTTTTGCCTTCCATGCTCACAAATCATCAAAA TCAGTACTCTATTCAAATTACACAACACCTAACCCATCTCTCATTTCTTCACTCCAAAATAAACCCTCTCTTCTTCTTCT TCATCTTCCAAAAAAAATGAGCTGCATATCCAGAACTAGGGTTTCTTTCATCTTCTCCAACTTTAAGCTTTTTTATTTTT TGAAATAATTTCTATATTTTTCTCCTTTTTTATCATTAATTTTCTATGTCATTGGTATTATGATGTTTTCAATTTTGTTA AATCAGAAATGGTCTTTTCTCCAGTGGATAACATTTGACCTCTATCTGTTCTTCTCCTTCATGTTTATATACATGGTTTT CAATCACTTCAGTCCCATCTATCTATCTATCTATCAGATATCTATTGATTGCATTTTAAACTTTTCCAGTTTGTATCTTC TGAAGCTTTCTTCATATTCTCCTTTGGAAACAACTCTGACCCTTTTAGATCTGATTGTACCAAAGGTTCTTTGAGTTAAT TTGTTCAATGTAGCACTCCACATAAATGATCCATTCCCTTATAAATCCAAAGAACACCCTTTTCCTCTTGCTCTCTTTGA TGTCACATTTATCAATGGAAGCAGCCTCTTATAATCCTGGTAAAAAAAATATCTCTTACCATTTTTCAGTAGATTATAAA TATTGATATAATTAATACTTGAGTAGCTTGCAATCTTTAAGTAGCACTTATAATTTCTATGGAATATGAAATTCTGTTCT TTAATTGTTTGATAATAGCCCTAAAATATGCTTGAGTTATATAGTAAGAACTTTTACTTCTTGTTTCTCACTGTTTATGT TTTTTTTGGGTTTAATTCTAACTTAGGTTGATTAAATTGATTGCTTGGGAAAATGAATTATTTATATCTTTTATTTTAAT TTTAAGCAATTATTTATATTTGTATAATGAAGTTTTACTTAGTTAATTTTTTGGATAATGTGTTGCAGCATGCTGAAAAC GCTAGAAAGGTACCAGAAATGTAACTATGGTGCGCCGGAAGCTAATGTGTCTACACGGGAAGCCTTGGTAATGCTGAATA GTTCCTTGTACTCTATATTTAATTACATAACTTGCTTTGATTTATCACCTTTTGATTTAATTTTTTTTCCTTAAGTTATA ATGGATTGGGATGCATCCTTGAACATTTTCATTAGCATTTTCACTAATATCATGATATAAAGTATATATATATTTTTAAA TCATATATGATATAAAGTATAGTTAGTTCAGCTTATTGGGGTTTATAGAAAGAACCATAGTAAAATAAAATATGGTTGAT TTTTTCTTTCTTTTTTTCATTTTTTTTAAGGGATTTTTTTTTTCATTTTTAGCTAATATATTGTACACGTGATCATAAAA AGACTAGGTTGCGTGATAAATTATTTTAACTTTGAAAGGATTTTTGAAAAAAATCTAAAAAATTGTTTTATGAAATTTTT ATATATTTTGAAACCAAAAAGTAATTTCTATTTTTATAATTATTTACAACCATGCCAGCTAATAAAGAATAAAAATAATC AAAGTATTTATTCAGGAATCTCATCTCATTGAGTACTTTAAAAACTTACACTGAAATAGGTTATCCAGCAGCAAAGCTGC ATAATGTAACTCAGTACAAACACAAGGAAGGTGGCATTGCTATTTTTGGAGTCAGAAATAAAAAACATATATTCATACTA ACCATAATTAATTAAGTTTGACATTCCCTCATATGTTGGAATCAGAAAAAGGAAGTATTAAATATTATAAGGAAAATTCT CCCATTTAGTGAGTCTCTACTAACTTTCCTAACATGTCATTGGTGTCCTACTTGATAGTTGAGAGGTATTTTATTTTTGC TGTACAACTTTTGTTAAAAAAATATTTTAAGGGTGTAAACTGTCATCCATAATGCGCGTTTTCTGAAGCATTGCACTAGT CCGTTCCAATATAACGTGCGCTCGTCCCCTATCAAATTGCCGCGAATTTACTATGTTTGCAGCTTTTTTGTAACCGTTAC ACTAGCCGAACATGTGGTGTACTCTAAACAACTTTTAAAATAAGTCTTATTTATTGCAACACATGAAAATTGAGACTTTG AGTGCTTATTGTTCTGGGTTGGATCCTTGCCCCTTTGCTCAAACTTTAGCTTAATTTCTATCATCCCCTCTACATTAATT ATCTGACCTCATTTCTAACAAAAAAAATGGCAAAGAGATTCAAATAAATTCTATAAATTCAGGTTTATTTAGTCAATCCT CTTTGGCTTTTGTACCTCATTGTGATTTTAGGAAAAACTCTTCTCATGATATATGACTTTATATATCTGATATCTTCCAT TGATTATATATGTTAGTATATTGATTTTGCAACTGTATATGAGTACTGTAGGAGTTAAGCAGCCAACAGGAATACTTGAA GCTGAAAGCACGTTATGAAGCCCTACAACGCTCCCAGAGGTACTCTATTAATTTTTGATATACCTTTCATTTATATGTAT GTGTGTGTGGGTGATAGATAGGGGTTGTCTAAATGACCCATGATAAAGTTTGGGTTATATAACCATCATCCAATCACATT GTAGATAAGTGAGTTGGAATTTTTATATTTTATTTATTAGTTTATTTCTAACTCATCTATCTCAAATGCGATTGGATGAT GGGTTATGTAACCCAAACTTTATCATGGATCATTGAGACAACCCTGATAGATATAAGTAGTCACTGATGTATTAACTTAA TACCCTCTTAATTAGGAACCTTATGGGGGAAGATCTAGGCCCTCTAAACAGCAAAGAGCTGGAGTCACTTGAGAGGCAGC TAGATTCATCCTTGAAGCAAATAAGATCTACAAGGGTACCCAATTTCATTTCCAATTTTTGCTATTTTACCATCCATGAA AATTATATGCTTTCAAATTGCCTTTATTCTTTTGTTAGTGAGTTGTAAAGACTCACGTATATAATCTCCAAGTAAAAATA CTGTTAATTATTTGAGTTCCTAATGGAAAGGAAAGTTGACTGCATATAATTGTAAGATTAAGTGTATTTTATTTTTTGAG GTTGTTTCTTTTACAGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGTATGACAACAGTTATCATTTT CTTTGCAACCATTTGTTGTCTTCTTTTGGTCCGTAGTACTTGGTTTTAGTGTATGTTTAGATACATGCCAAAACAAAAAT ATGTGGTAATTACAAAATTATAATGAGCAGTCAAAAAAACTACGAGAAATTGTGATTTTGGCTTCACTCTGGTTTTTTAT CATGTATCAGTCATACATTTACTCATTGATGTGTTTACTTGTGTAGGAACACATGCTAAGCGAGGCTAACAGGTCTCTCA GACAAAGGGTACGTAAGAAACATCTCAACTAAAAAGAGTGTGTTGCTCATCACTAAAATTGAATCAGCAATTACAAGAAT CATTCATGATCTGAATAAATTGAAGATAGAGATCAATTGACCTGTCTTTCTTAATTGAAATTTAAATTGATGGGAATGAG TGACTCTGTTTGTTATTTAGCAGCTGGAAGGGTACCAACTAAACTCACTGCAACTGAATCCCGGTGTTGAAGACATGGGA TATGGCCGCCATCCAGCTCAAACTCATGGTGATGCCTTCTATCATCCAATAGAATGTGAGCCGACCTTACAAATTGGGTA TGCACTCTTTCTTCACTCAATGCCATTGATTAGGTTCACAGTCTAATAGCATGTTTGGATCAGCTTTAA
CDS sequence (LotjaGi4g1v0367500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGATCTAGGCCCTCTAAACAGCAAAGAGCTGGAGTCACTTGAGAGGCAGCTAGATTCATCCTTGAAGCAAAT AAGATCTACAAGGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACATGCTAAGCGAGGCTAACA GGTCTCTCAGACAAAGGCAGCTGGAAGGGTACCAACTAAACTCACTGCAACTGAATCCCGGTGTTGAAGACATGGGATAT GGCCGCCATCCAGCTCAAACTCATGGTGATGCCTTCTATCATCCAATAGAATGTGAGCCGACCTTACAAATTGGGTATGC ACTCTTTCTTCACTCAATGCCATTGATTAGGTTCACAGTCTAA
Protein sequence (LotjaGi4g1v0367500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNSLQLNPGVEDMGY GRHPAQTHGDAFYHPIECEPTLQIGYALFLHSMPLIRFTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 80 | 80 | 2.5E-33 | – | |
| PANTHER | 1 | 80 | 80 | 2.5E-33 | – | |
| Pfam | 1 | 59 | 59 | 7.3E-19 | ||
| ProSiteProfiles | 1 | 67 | 67 | 12.432 | ||
| Coils | 13 | 33 | 21 | - | – | |
| Coils | 39 | 59 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0367500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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