Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0367800 |
| Transcript ID | LotjaGi4g1v0367800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GDP-dissociation inhibitor 1; TAIR: AT3G07880.1 Immunoglobulin E-set superfamily protein; Swiss-Prot: sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1; TrEMBL-Plants: tr|I1K3P3|I1K3P3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0367800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74760807..74763762) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAAGAGTGTTGGATGTCTGAGTTTATTTGTTATATAACCTTCTCCACCAAAGTAGTGGTTCCCTACCACCAACTT TATTCCAACTGTTTTTCATTACCATTTCAATTCCAGGCCCACATTTGGCGTGTGTTCCTGTTCTCTTTGTCAAATCTAAT CTACAATATCTGCATACATATGCATTGTACACACCCCTTCAGCCCTTCTGAACTCAAGTTTTGTCAGACTCCATTCACTG CAACAACAAAAAAAGCTCTAAATTTGGCTTAAATTGGAAGTGTTACTCTTGTAGTAGTACCAACCAATTTTGAAAACAAA CATTCTGTTTCTGTTTTGAAGGTTGACTATGTCTGCTGCTGTTGGAGCTGTGTCCACAACCAAAGATGTTACATTCAATG CTCATTTAGAGGAAGAGCTCAAAAACAAAGGAATCAACAAGGTTGATGAGGAACAAGACCAGCTCCTTTACAATGATGCT GCTGAAGAAACTGAGCTAGAAGAGGAAGATTCCAAGTTGGAATTGGATCTTGGCCCTCAGTTTTCCCTCAAGGAACAGCT TGAGAAAGATAAAGTAACATTTTTTTCAAATGCTTCTTCACTACTCTGATTTCTAAAGCTATTTGGTAAATTTTTTTGTT GTATTTGACAGGATGATGAGAGTTTGAGGAAATGGAAGGAGCAACTTCTTGGAAGTGTTGACATGTCTGCTGTTGGAGGT AATTAATTAGCTTTTCTTCCATTTTCTTTTCTTTTGCTGGGACAATTCCATAAATGATCATTTCAAATAATTTGACATTA ACCTCTCTTGGAATGTGAATCTGTATTGAAAATTCATGTTGAAAATGGTTTCTCTTCCTCCAATTTAATTGGGTTTGTTT ATATGAAACACTACTGCAAGTGCAATGCTCTCTTGCATTTCATTTGCTTAACCCATTTTTTCTTTCAAATATAAACTGAA ATTACTTATATTTTCTAAGCTGATTCTTCCCCACAGCTTTTTGTACATTCATACTAATCTAAGTGACTAGCCCTTTTGAA TCACTTTATTTTTTAAATATGATAATTCTCAAAGCAAAAGGTACCTGGACCCTGCCTCCCTGATAAGCAAAGGTTTAGGA TGATTTTTTATAAGAACCACTTGAGAATCATACTATAAAATCAGCTGTTTTAGTCCAAGAGCTCAAAGCCTTCTAAACCC AGCCCAGGCCTGAACTCATACTTCCAATGTGGGACTCAAGTCTCGTACCTTGCAATTGGATCCTAACAATTTTACATCTT GTTTTAGCATACTTGTGTCAATAAGTTTCATTCAGATCCTTAATAGTTTTTGCTAGTCCTGAAAATTCTGAAAGCTTTTT GTGTTGTAATTCAGAGAACAAAGAGCCAGAAGTGAAGATATTGAGCCTCACCATCATATGCCAAGGAAGGCCTGAACTCC TCTTGCCAATTCCATTCACTACCAATTCAAAGAAGAGTAGTATCTTCACCCTTAAGGAAGGAAGCCGGTACCGTCTGAAA TTCTCCTTCACTGTCTCTAACAACATTGTTTCCGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGAGTTAGGGGTGA GACATTTACATAGACCTTGTTGAGTTTTGGCTCATTAGAAAGAGAAAAAATCAGAAAGATTTGTTTCAGATTTGTTTCTG TTTTATTTTGGGTTAAAATCTTTAGTTTATTAGGATTTGATTTAATGTGGATTGTAAAAGGTTTTAAGGGATTGTTATAG GATTTATTAGGATTTTATTGTAAAATAGAGATCAATAGAATCCACTATAAATAGGATAACAATGTAACCTTAAAAGTTGT ACTTAGTACCACATGCTTCATGCCACAAGTAATACAAAGGAGTTATAGCTACTCTATAGTCGCAGAGGTAGGCAATTTGG CCGAACTGCGTGAACAAAGCTTTGTGTGTTTCTCTCTACTCTGATCTGTATTCGTGTTGCTGTTCTTGATTAATTAGATT AATTAAACATCCATGTTTTGAATTGTCATTACTCATTAGTTATGTGTGGCTTTCTTGATTTGTTGAATAGTGGACAACGC AAAAAGAATGTTGGGAACATACAGCCCTCAACAGGAACCGTATACATATGAATTAGAAGAGGAAACTACCCCTTCTGGCT TATTTGCTAGGGGAACCTATTCAGCAAGAACCAAGGTATTATCACACCCAAATTGTTTATTCACTAACTTTATGTTTTTT TTATTTTATTGGGTTAGCCTGTTTTGATCGGCTTAATTACCCCCATGGTCAATTCTGACATTCTGAAGCTACTCGAAAAA AGCTTCTATCTAAAATTGATTTGGCTTTAGAATCAATTGGAGAAGGATTTTCAAAGATACACTAACTCAACTTTTTTGCT TCAGTTTGTAGATGATGATCGCAAATGCTACTTGGATGCCACTTACCACTTTGAAATTCAGAAGAATTGGCCTGCAGCTC ACTGAGATTTTCAATCTCAAGTAATTTAAGTGTGGATTTTTTTTCTCTGTCTTCTTGTATCTTCTAGGGACAAATTGAAA TCCAACTTTATGTTTATTAAATTCAGTTAGTGGTTCACATGCATGCATACACTACATGATCGTGCCCAGTGGCGGAGTCA GGATTTTCGGGGAGCCTGGGCAAAATTAAACCTAAGCCTAACTAACTGCACCTGATGTCTGACCTAGAATTTTAAATTGC AATTGCGTGCAATGCGGTGTTGTGGGGTGAATAGCTTGTTGCAGTGACAAATATGCCGCATTCTTAATTAAACACCCAAC TTGAAACAGTGTGTGTTTGGATCAGCGTGGTTGAACTAATAGTAGTTAAATAATATATTTTAAATAAATATTAAGTAATA TATTAAAACAAATTACTCTTTTTGACTACTGTAATATATGTTTTAGATTTCTAAAGTTTGATTAAATTTTACGGAC
CDS sequence (LotjaGi4g1v0367800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTGCTGTTGGAGCTGTGTCCACAACCAAAGATGTTACATTCAATGCTCATTTAGAGGAAGAGCTCAAAAACAA AGGAATCAACAAGGTTGATGAGGAACAAGACCAGCTCCTTTACAATGATGCTGCTGAAGAAACTGAGCTAGAAGAGGAAG ATTCCAAGTTGGAATTGGATCTTGGCCCTCAGTTTTCCCTCAAGGAACAGCTTGAGAAAGATAAAGATGATGAGAGTTTG AGGAAATGGAAGGAGCAACTTCTTGGAAGTGTTGACATGTCTGCTGTTGGAGAGAACAAAGAGCCAGAAGTGAAGATATT GAGCCTCACCATCATATGCCAAGGAAGGCCTGAACTCCTCTTGCCAATTCCATTCACTACCAATTCAAAGAAGAGTAGTA TCTTCACCCTTAAGGAAGGAAGCCGGTACCGTCTGAAATTCTCCTTCACTGTCTCTAACAACATTGTTTCCGGCCTCAAA TACACCAATGTTGTTTGGAAAACTGGAGTTAGGGTGGACAACGCAAAAAGAATGTTGGGAACATACAGCCCTCAACAGGA ACCGTATACATATGAATTAGAAGAGGAAACTACCCCTTCTGGCTTATTTGCTAGGGGAACCTATTCAGCAAGAACCAAGT TTGTAGATGATGATCGCAAATGCTACTTGGATGCCACTTACCACTTTGAAATTCAGAAGAATTGGCCTGCAGCTCACTGA
Protein sequence (LotjaGi4g1v0367800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAVGAVSTTKDVTFNAHLEEELKNKGINKVDEEQDQLLYNDAAEETELEEEDSKLELDLGPQFSLKEQLEKDKDDESL RKWKEQLLGSVDMSAVGENKEPEVKILSLTIICQGRPELLLPIPFTTNSKKSSIFTLKEGSRYRLKFSFTVSNNIVSGLK YTNVVWKTGVRVDNAKRMLGTYSPQQEPYTYELEEETTPSGLFARGTYSARTKFVDDDRKCYLDATYHFEIQKNWPAAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 237 | 231 | 7.1E-139 | – | |
| PANTHER | 7 | 237 | 231 | 7.1E-139 | ||
| MobiDBLite | 25 | 56 | 32 | - | – | |
| MobiDBLite | 39 | 56 | 18 | - | – | |
| Pfam | 45 | 234 | 190 | 1.8E-84 | ||
| SUPERFAMILY | 48 | 236 | 189 | 5.6E-67 | ||
| Gene3D | 56 | 237 | 182 | 2.0E-68 | ||
| PRINTS | 155 | 171 | 17 | 1.1E-7 | ||
| PRINTS | 172 | 187 | 16 | 1.1E-7 | ||
| PRINTS | 214 | 231 | 18 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho GDP-dissociation inhibitor activity | Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi4g1v0367800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…