Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0368000 |
| Transcript ID | LotjaGi4g1v0368000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FHA domain-containing protein; TAIR: AT4G14490.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|O23305|Y4449_ARATH FHA domain-containing protein At4g14490; TrEMBL-Plants: tr|G7LJA2|G7LJA2_MEDTR FHA domain plant protein; Found in the gene: LotjaGi4g1v0368000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74779428..74783554) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTGGCCTTTGGTTTGCCCCATGGCGGGAAAAGTTGGAATTTCAAAATATCAAAACCAGAATCAGTAGCCACATT CTCACTGAAAATGGAACCTCCCTCTCTCACACTGCGAATCCTCCAAGGTCCTCCCCATTGCAAAGGACAAACCCACAACT TCAAACCCGGATCCGCAATCCGAATCGGCCGGGTCATCCGCGGCAACACCCTCCCCATCAAGGACCCTGGCATTTCCTCA AAGCACCTCAACATCCTAACCGAATCGGGTCAATGGGTGCTCCGAGACCTCGACACCTCAAACGGCACCGTTTTGAACGG CTCCAATGTCCTTCCGCAAACCCCTTTCCCTCTTCACGATGGCTCCACCATCAAGATCGGAGAACTCACCTCCATCCTCG TCAACCTCCTCCACCCGATCCCAACCGAACCCGTCACCGTTCCCGAGGCTGAGGGCTCTGAACCACCCGTTGCCAAACCG GGTCGAGGTAGAAGAGGTAAGGGTTTGAAGGGGAAGGTTGCGATTCACGAGAACGCGAGCGTTGACGTTGGCGATGAATC TGGGTTTGTGGGTCGACCCGAGAGCAACCGGGTTACCCGGAATACGAAGAATAACCGCAGTGTGGTTGGGGTTTCTGGTT CGAGTGTTGCTGGGGATTTGGGTGCTGCGGAAGAGAAGGTTGCAGAACCGAAGAACACGCGGTCGAGGGCAGCGCTGGGT TCGAAGAATAAGAGGAGCGTGATTGAGATAGTGGATTTGAGTTCTGGGAATTCGGATGATGCTCCGGAAGAGAAGGTGGA AGAACAGAAGAATTCAAGGGTGACCCGAAATTTGAAGGAATCTGAAGCTTCAAGCTTGCAGATTGGGGTAGTAGAACCGA GAATTACAAGGGTGACCCGGAATTTGAAGAACAAGCAGAGTGTGATTGGGGTTGGGGATAGTGTTCAAGCTTCAAGTTTG CAGGTTGGAGTGGAGAATGTTGAGAAGAAGAAAACGAGGGGCGGTGGCAGGAGGAAGAAATTGCCTGAAGAGTGCACTGA TGGTGGTGGGAAAGAGACAGAAAAGGAGAATTTGAATGGTGATGGGAAAGAGACTTGTGATGGGAGAGAAAAGGAGAATT TGAATGGTGATGATAATTTGCCTGATTTAGAGAAGTTGAGTCTGGGTGAGTGGTTTGATTTCTTGGAAGTTCATTTGCCA AAACAGATAGTTGATGCAACTGAAGAGATGTTTGGTTCAATGAGACAGAAAGCTGAGAGACTCAGAGAGTACATCATAAT GCAAAAGATTCAAGAGGTTACAGTGCCTGTGGAGTAGACTACATTCTTATTGTCTTTGCTTTTATTGTTCATCCTTTTCA ACTATATTAGTTCCCTGTTTGTTTGTAAGTATATTAACATAGAGTATGGTCTAGAACTCTAGATAAATTTAACTTCCTAT TGTGAAATCTGTCTAAATCTCAGGTGGGTTTTGTTTCTGTTCCTCTAAAATCTAAGGAACCATGGATTATGAAAATCCAT GGTGTCATGAATTGAATTGCTAGTTCAGTGACAAACAAATGTTATGTTTCTGTTCTGCCTCACTCAACTTACTATTTAAT GTTTAGTGATAAGTGAAGGTGAAGATTACCACTGTTTTATGTATACGCTCGAGGTTTATTTGGATTTTTCATTGTTACTA ACTATTGTTGTAAACTATGATCACATCTACAGCTTAAGAGTACTTTGGATGTATTAGATACCTGACATATTACTTAATGC AAGTTGGATCATTGGCAGATTACTTAATGCTACAGAAAATTATTAGGAAGGTCAATATGGAATGAATCTGATTAATAACT ACTGCAGCATTTCATATCTGAATTGACTCATCGACACTTAAGTCTACACATAGTTCGTTGTTTGTATTAATGCAAATTCC TGCAAAAAAAAAGTAGATATTTGCAGATTGGCAGCTTGGCAGCTTGGCAAAACATATAAAGACACTAGAATCATCTATAA TAGTGTTATTGAAGGTTTTAGAGGTGGAAGCATGGCTCTTCATTTTTGTTCTCATCTGGTGTTTCTTCCATTCCTCGCTG TTGATCCCCTTGCATTCATGTACAGGTATGCATATGTTCACACTGAATGTTAGTTAAGTTCTTAACTTTTCATTTTAATA AAAGCACGCATTTAAGTATTTGCTTTAACTTAAAAACTCTTTTACAATCAGTTCTCTTGCTTCGTTTCCTTTCCTGTGAA TTTCATTTACCTTAGTGAAACTTAATGCTCAACAAGGGTTCAGATGAAACTGGTTTTTTGTTTGATTTTTTACTCTTTGA TAACTGCCAAAGTTCCTTTTAAAGTTAATAATCAGAACTAAAGCAGTTGTAATTTATCAGGGAAAATTAACCCTATTATT TGCAATCGCTTCTATCTCATTTCCACCTATTGTATCTTTCTATCACATCACTTCATAGTTTTCATTTATCTCTCTATTTC TTACTTCTCTGGATGTAGGTGGATTTGGGGTGTGAATAAATCTTTACTGACATATTTATTGTCTTTGATTAGATTTACTT TTCTACTACACAAAATTACAACAATTTTTGGCCATTTAGAAAATTATTGAAATATGAAAATTACGACGACTTTTACTTTC TCTTGAGAGTGAAGGTGTGAATGTGTGATGAGCTAAAACATGGTATGTATGGTGAATTGGTGATGTTGGTTGTGGTCGTG ATGATGGTGATTCTTGTTTATAAATTTCACTGCTAGAAATAAGATTTTATCTTGTTCCTGAAAATTATCTGTCATTTCAT TTTATTTTTATAAGAACAACACATTTGTCCCTTGTGCTGCTGATACTGGTGATCCCTCTATCTTGCCTTAGTTATAAGTT TATTTCCACAACATCACATTATAGGACCCCAAGACGTGTTGTAGGAGCACCAGTTACAGTTACAGAATCTGAGGTTGCTA AGAGTAGTTAGTCACATAGTTCTTAGTAGTTAGCTTAAATAATACTAGTAAGTAGGAGAGGAGCAGAAGGATAATTGATT ACAGTTTGAATTGTTCAGGCTTGCCAATTAATATTTGAGTATCCTGGGAACTAGACTTATATTTTTTTTGCAATGTAGGT TTGTAGAGTAACTCCTATCATGCTTGTGTTACCAATTGAGGCATATCTGAGATTGCTAATCCCTTTATACATCCAGATTG ATTTGGCCTCAATGTGAAATTCTGTACCTTCAATCTGCATGCTGATCAATCCCTTCATCACTTTGATATTGAGCCATTAT GTCAATATTGTGATTACCATTTTGCTTATTTTGGAAGACTGGATACTTTTCAGTGCTTCTAAATTTTAAATTATACAAAT ATCACGCATTGCTTTTTCTTGTTCTGATCAAGTTCATTCCTCTGTCAGCAGCTTTGAGGACATACCCTGATTTATTATAG TTTGCAACTGGAGATGGCTTTTTACCACAGAATTTGTTTAGACAGTATGGATGGTTCTTCTTCATGGCACATTTGTAATG CTTCCTTCATTTATCTTTGTTATTCATCATTCAGACTATGTATCAACTCTGTGCCACTCTCTTTGACTCTGTTTCATTGC CAAGTTCACTTCCTTCATTTATCTATGTTATCCATCATTCAGACTATAAGGAATTTTGAATCACTTATTCATTATGTGTT TTTTTTTTCTGGTTATTTGAATCACTTATTCATGTATCTTTGTTCTCTCTTAACCTTTTTTTTCTGGTTTCCTCCAGCTG TTTATTGTCCTTTTCTCATATTTCTATCATACTAATAGAGTAATATTTGTTCTACTATTTTTCTCACAATGTCTCATCTC ATTTTCGCTCTCAAACCAAACACATCCTACAAGTGAAAATGATGCACAAATGACAAAGATGAATGAGAGCCGTGCACTGA TTGTGGAGAGGAATAAGGGGAAAGGACAGAAAAAACAGTTGAAGAATGGCTATCAATCATACATGACCTGTGAATTTCTC TATCAAATCATATCACTTTCCTGCGAAGGTTGTCAACATAGGGTCTGATCTGGTCTTCTATTTCTTATTAATTAATGCCG TTCGGTTAGGGAAGGTTCCTGCCTAGTGCCTACTGTACTTAACTCAC
CDS sequence (LotjaGi4g1v0368000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTCCCTCTCTCACACTGCGAATCCTCCAAGGTCCTCCCCATTGCAAAGGACAAACCCACAACTTCAAACCCGG ATCCGCAATCCGAATCGGCCGGGTCATCCGCGGCAACACCCTCCCCATCAAGGACCCTGGCATTTCCTCAAAGCACCTCA ACATCCTAACCGAATCGGGTCAATGGGTGCTCCGAGACCTCGACACCTCAAACGGCACCGTTTTGAACGGCTCCAATGTC CTTCCGCAAACCCCTTTCCCTCTTCACGATGGCTCCACCATCAAGATCGGAGAACTCACCTCCATCCTCGTCAACCTCCT CCACCCGATCCCAACCGAACCCGTCACCGTTCCCGAGGCTGAGGGCTCTGAACCACCCGTTGCCAAACCGGGTCGAGGTA GAAGAGGTAAGGGTTTGAAGGGGAAGGTTGCGATTCACGAGAACGCGAGCGTTGACGTTGGCGATGAATCTGGGTTTGTG GGTCGACCCGAGAGCAACCGGGTTACCCGGAATACGAAGAATAACCGCAGTGTGGTTGGGGTTTCTGGTTCGAGTGTTGC TGGGGATTTGGGTGCTGCGGAAGAGAAGGTTGCAGAACCGAAGAACACGCGGTCGAGGGCAGCGCTGGGTTCGAAGAATA AGAGGAGCGTGATTGAGATAGTGGATTTGAGTTCTGGGAATTCGGATGATGCTCCGGAAGAGAAGGTGGAAGAACAGAAG AATTCAAGGGTGACCCGAAATTTGAAGGAATCTGAAGCTTCAAGCTTGCAGATTGGGGTAGTAGAACCGAGAATTACAAG GGTGACCCGGAATTTGAAGAACAAGCAGAGTGTGATTGGGGTTGGGGATAGTGTTCAAGCTTCAAGTTTGCAGGTTGGAG TGGAGAATGTTGAGAAGAAGAAAACGAGGGGCGGTGGCAGGAGGAAGAAATTGCCTGAAGAGTGCACTGATGGTGGTGGG AAAGAGACAGAAAAGGAGAATTTGAATGGTGATGGGAAAGAGACTTGTGATGGGAGAGAAAAGGAGAATTTGAATGGTGA TGATAATTTGCCTGATTTAGAGAAGTTGAGTCTGGGTGAGTGGTTTGATTTCTTGGAAGTTCATTTGCCAAAACAGATAG TTGATGCAACTGAAGAGATGTTTGGTTCAATGAGACAGAAAGCTGAGAGACTCAGAGAGTACATCATAATGCAAAAGATT CAAGAGGTTACAGTGCCTGTGGAGTAG
Protein sequence (LotjaGi4g1v0368000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPPSLTLRILQGPPHCKGQTHNFKPGSAIRIGRVIRGNTLPIKDPGISSKHLNILTESGQWVLRDLDTSNGTVLNGSNV LPQTPFPLHDGSTIKIGELTSILVNLLHPIPTEPVTVPEAEGSEPPVAKPGRGRRGKGLKGKVAIHENASVDVGDESGFV GRPESNRVTRNTKNNRSVVGVSGSSVAGDLGAAEEKVAEPKNTRSRAALGSKNKRSVIEIVDLSSGNSDDAPEEKVEEQK NSRVTRNLKESEASSLQIGVVEPRITRVTRNLKNKQSVIGVGDSVQASSLQVGVENVEKKKTRGGGRRKKLPEECTDGGG KETEKENLNGDGKETCDGREKENLNGDDNLPDLEKLSLGEWFDFLEVHLPKQIVDATEEMFGSMRQKAERLREYIIMQKI QEVTVPVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 331 | 331 | 3.6E-59 | – | |
| Gene3D | 1 | 109 | 109 | 6.3E-26 | – | |
| PANTHER | 1 | 331 | 331 | 3.6E-59 | – | |
| SUPERFAMILY | 3 | 108 | 106 | 2.1E-21 | ||
| CDD | 5 | 98 | 94 | 1.51258E-17 | ||
| SMART | 29 | 80 | 52 | 2.1E-5 | ||
| ProSiteProfiles | 30 | 80 | 51 | 11.768 | ||
| Pfam | 31 | 97 | 67 | 1.0E-13 | ||
| MobiDBLite | 115 | 140 | 26 | - | – | |
| MobiDBLite | 154 | 185 | 32 | - | – | |
| MobiDBLite | 164 | 182 | 19 | - | – | |
| MobiDBLite | 192 | 211 | 20 | - | – | |
| MobiDBLite | 223 | 254 | 32 | - | – | |
| MobiDBLite | 228 | 247 | 20 | - | – | |
| MobiDBLite | 296 | 348 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0368000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…