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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0373200 |
| Transcript ID | LotjaGi4g1v0373200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13; TrEMBL-Plants: tr|I1K3U4|I1K3U4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0373200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75296450..75301241) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTTTGCTGTCCCCGTAAGATAACTCAAGTGATAGGAGCTCAGATGAATTTGGTAGAGAGGATTCCTGACGGGTGCAA TTTATCTTTCCGATGTACTAAATATTGTTTTGCTATTCTCACATAGTGTTAAAAAAAATCAACTTAGTACTGATTTATCT ATTTTCAGAACTAATAATAATTAATGAACATGATCAATTCAATAATTAAACTCAAGATTAATACAATGATGTTGATATTA CCAAAGCAATGCATTGCAGTTGAATTCCACAAACCCTAATCACCAGACAAAAATGGTGAAGAAGAAAGTCCCCGATTGGC TCAACAGCTCTCTCTGGTCATCACCAATTACCACTCCTCCTTCCTCCGCCGCGGTCGAAGACATCCCCGCCGTCGTCACC TCACCGGAACCGCCACGACCTCCTTCCCCTCCCGTCATCATCCAAGATCCTCCACAGGCACAGAAAATCCAGGACTCGCG ATCCGACGATGACGGCGACACATCCCCTTCTTTCTCCGCCCGCGATGTCCCTCACCAGGCTCAGTTGTTGGCCGAGGTTT CCACACTCCCTTCGCTTTCGTAATGGTAATGAAGTTTTGTTGTTGGTTACTGCGTTTGCGAGTACTGATTTTTTTGTAAT GGTTTGGTTTCAGTTGTCGAGGAAGGTGATTGATATTCGGGAGTTGCGGAAGCTCGCGTGTGATGGTGTACCTGATGCTT CTGGGATACGCTCCACCGTGTGGAAGGTGATACTCGTTTGATCCAGCTTAATTGTTTCTATCTGTTTCTTGAGTGAATGG AAGATCATGTCATAGGAATGCAATGATGCCTTGTTTATACTCCTATGTTTTCAATGTCAGAATTCATTTGGAAATAGAGA AAGAATATAAATAGTTTATGATTTGTTTAACTAAATTGGAACTGGGATTTTGTTCAGTTTTTGTGATGGGTACTTATTTC TAAAATTGAAGGATGTGCATTTCTAACCTGCCATGCAAATGAGACTTATTCCCAGCCCCTTTCGATCTCACTCCCGAGCG CGTATGAACTTTAATGTAGGGATTAGATTTGGGTGTTTTTGTCTAGTCTAGGGTTTTTCCCTTGTTCATGGAAAGAAGGA AGTGAAATCATAGAGTACTATTGTAGGCTGTAGCTTATGGTTATTTACATTTGCAGCTTTTGCTTGGATATCTTCTGCCA GATCGAGGGCTTTGGTCATCTGAATTAGCGAAGAAGAGAACCCAGTACAAGCAGTTCAAAGAGGAGGTTCTCATGAATCC TGTAAGTTAGTTGCACAGGAAGCCCTTGTGCCTTTTGTGTTATCATTTCAGATGATTTTTGGTGGTTGGACTATAGATGT TTGAATTTCTTTCCACATTCATCTTACTGATTCTTACATCAGACTATGGGCTATGGGAAGAGAGATAAATCTAAGGAATT TGTGGGACATTAGTTTTTTAATCTGATCTGATTTTACTTTGTTTTTTCCTGTTATATTGATAGGGTGCATGTTTGTCCGA GTGAAATCATTGCTGAATTAGTGGTTTTTAATGCATTTTCTATTTTCTTTATCTATTTGGCTCTCTGAAAGTTTTTCTCT GGCTAGCTAGTCAGAAATAACATGGAAGATGTACAACTCCCTTAGTTGTGATAGTGATGAAGCCAAATGTGAGAGGGCCT TGCTCTCCAGATCAGAAATCACTCATGGGGAGCACCCTTTAAGCCTTGGGAAGACCAGCGTATGGAATCAGTTCTTCCAG GTATGATTCAAAGTACTCTTCTACATATCATTTCAAGGGAAATACATGAGATAATTATTATACTGCATTTGTTTTATTCA ATACTTCTATTGTGAAGTTCTTGATTATGCATGAGCTATGTTGTGTACATCCCATCAAACTCATCTGATGACACATTAGT TCATGATGCTTATCATTTTACTTAAATGGGTGAGAGCTGAAAAGCATTCTACTTGAAGCATCCTGAATTGCTAATTCCCA GTTGTTGTATCTGTATTCTGTAACGATAATCACCTACCCACTGTCTACTCTGAGCCATTTTTCTAAAATTTCAAAGATAA TATGAGCACCTCATGATCTATTTGTTTTAAAGAGGTCTTTATGAAAACAGGCTTAGCAAATTTGTTATGGCGTATACTAT TGCTGCTGTCAACAAGCTAATCATTAGTTAACTCTAATGTTCATGGTATTACAAGTCTTGTGCTAATGCACTATATTACT TTGGCATGTAAAGGCTGTTGTGAGTTTTGTGACTCACTGACTTGAGAAGTAAGTGTCCTCTTTTCATTTTGCAGGACACA GAGATCATAGATCAGATTGACCGAGATGTGATGCGCACTCATCCTGATATGCACTTCTTCTCTGGTGATTCTCAATTTGC AAAACTGAATCAGGTTGCTCTTATATTCGTCTTGAAATTCATACGAACTCCAAATTCAAGTTTTCTCTGGCCTGAACCTT TTGATTTATTTTGGACATTTTCAGGAGGCTTTAAAGAACATACTAATTATTTTCGCCAAGTTAAACCCAGGTGTAAGATA TGTTCAAGGGATGAATGAGGTATTGGCTCCTCTGTTCTATGTGTTCAAGAATGACCCTGATGAGGAAAATTCGGTGAGTA TATAGTATACTCTTCTTATGTGTTTATTTTCCGTCATATATTGTGGATTGCTTTATCAAACCCTGATTTCCTTCTGTTAT TCTCGTATGTAATGCATGCTCTGTTCACTCAGCCTGTAATCACATTACTTCTTTCATTTAATTATACTTTTGTTTTGTAA AAATTAATGACTTCGATAAGTTTTTGGTGCCCTTAAAAAATTACCAATTTTTTGTTCTTGTCCTTACAATTTGTTCCCCA TTTTTAGTCCCTTGAACATGTGATTTCCCATTTTGGTTTGCTGCAAAAAAGATGCGTTGATACTTGATAGCAATAAGGAT GTGATACTGTGATGTAGATTCATGTTACAGTCTTGTTCTATTTTGCTATTGTTTTATTTGTGCTAATCACTAAACAGATC TCCATTACAATATGCAGGCCTTTGCTGAAGCTGATACGTTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCGAGATAAC TTTGTTCAACAATTAGACAACAGTGCTGTTGGAATCCGTGCAACTATTACAAGATTGTCTCAGCTTTTAAAAGAACATGA TGAAGAGCTGTGGCGTCATCTTGAGATCACTTCTAAAGTAAGACAGTTTTTAATAGATATTCTATATTGTTACAGTTGTC CTTTTACTTTATGTGTGGAAATATCGGTAAGCTGAATTATTCGTTTGCACATTGCGATATCTGCTGTTATGGAATTATTT AAGGACTCTGCACTACTCTGTGCTGTATTACATTTGTTTAATAGACTAAATTATAAATAAGTGTGGCTCTTTCCTGTTTC ATTTTTTTAGTGACGTGAGTTTGACCTTCTCTATGTTAGATTTTTTTTCTTTCTATTTACAATGTTTTATGTTTCTCCAC TACTGCTAATGAAGTGATAAGAGGCTTTAATTAGTCATTGTACTTTTTTGAGTGCATATGCTTGCCTGATTGATTATTCT ACCATTATTTGCTTCTGGCTATTGTACGGTTGATCAGAAATGGCTCATTTTTTCTGCTTGTGAATGTCAGGTCAATCCCC AATTCTATGCATTTAGGTGGATCACTCTCCTGCTAACTCAAGAATTCAATTTCGCTGACAGCATTCACATTTGGGACACT ATTTTAAGTGATCCAGAGGGTCCACAGGTACAAAATTGTTCGTATTTATGTAGTACTACATTGGACTAGAATTTAGCTTT ATGATACACTTCTCTTCTTTGATGACTGTGACAAAAAGAGTTATTAGATATAAATTATAAACTTGTACATATACAAAATA AGGGAATGAATTCAGCTCCATATGAGTACAGTGCAAGGAAGCAACTATTAATGAGAAAATCAATGACAGTTTTAAGTTTT AACAACTGTATTTTTTACTATCAGACTGTTTTTGATTTCTGTGATTGCGGTCCACTTTGCACTTCTACTCTAGAATGCCA GACCTACTTTAGAAGATCCTAATTGTAAAGGAAAATAAATATTCATCAGGGCCGATAGTTATATTAGAGGAACATTAGAA GTTTAGAAAATGTCAAAGTGTGCTTGAGTAATGTGGTACAATAAGTGGTATATGCTTTTGGTGACTGCTACTTGGTACTG AAATTCCATTGTTGCTTTTGAAACTCTTGTGTATTGAACTGATGATGATAGAACTTCTACTTGGGTTCTGTTTATTTTCT TTGCCTCAAAGCATCTTATAGGAAAACTAATACTATAATTCGCAGGAGACTCTTCTCCGGATATGCTGTGCAATGCTAAT TCTGATTCGTAAGCGCCTCCTTGCCGGTGATTTCACTTCTAATCTGAAGTTGCTGCAAAATTATCCCACTACAAACATTA GTCATTTGCTCTATGTTGCCAATAAGTTTCGTGTACAGTCAATCTAATGGTTTACGCCCCTGGTATTCTGCATTTTGCTT TTGTACCTCTGTTTGAGTGTTTCTAATTTAGTGCTTGTAAATGACTGAATGTCAGGCTCCGAGTTCGAGCATCAACTGCT TGTTTATTTATTCATTACTTTTATTTTATGCACATTTTTGCTTTTAGAATAAGGTTTCGCTTCGGTGAAATACCTTTGAC AATGTAAAACTGTACTACCCGTGCATATATATTAAACTCAGAGAAAAAAAAACTTGCTATTACCGTTTGAGT
CDS sequence (LotjaGi4g1v0373200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGAAGAAAGTCCCCGATTGGCTCAACAGCTCTCTCTGGTCATCACCAATTACCACTCCTCCTTCCTCCGCCGC GGTCGAAGACATCCCCGCCGTCGTCACCTCACCGGAACCGCCACGACCTCCTTCCCCTCCCGTCATCATCCAAGATCCTC CACAGGCACAGAAAATCCAGGACTCGCGATCCGACGATGACGGCGACACATCCCCTTCTTTCTCCGCCCGCGATGTCCCT CACCAGGCTCAGTTGTTGGCCGAGTTGTCGAGGAAGGTGATTGATATTCGGGAGTTGCGGAAGCTCGCGTGTGATGGTGT ACCTGATGCTTCTGGGATACGCTCCACCGTGTGGAAGCTTTTGCTTGGATATCTTCTGCCAGATCGAGGGCTTTGGTCAT CTGAATTAGCGAAGAAGAGAACCCAGTACAAGCAGTTCAAAGAGGAGGTTCTCATGAATCCTTCAGAAATAACATGGAAG ATGTACAACTCCCTTAGTTGTGATAGTGATGAAGCCAAATGTGAGAGGGCCTTGCTCTCCAGATCAGAAATCACTCATGG GGAGCACCCTTTAAGCCTTGGGAAGACCAGCGTATGGAATCAGTTCTTCCAGGACACAGAGATCATAGATCAGATTGACC GAGATGTGATGCGCACTCATCCTGATATGCACTTCTTCTCTGGTGATTCTCAATTTGCAAAACTGAATCAGGAGGCTTTA AAGAACATACTAATTATTTTCGCCAAGTTAAACCCAGGTGTAAGATATGTTCAAGGGATGAATGAGGTATTGGCTCCTCT GTTCTATGTGTTCAAGAATGACCCTGATGAGGAAAATTCGGCCTTTGCTGAAGCTGATACGTTCTTTTGTTTTGTTGAGC TATTGAGTGGGTTCCGAGATAACTTTGTTCAACAATTAGACAACAGTGCTGTTGGAATCCGTGCAACTATTACAAGATTG TCTCAGCTTTTAAAAGAACATGATGAAGAGCTGTGGCGTCATCTTGAGATCACTTCTAAAGTCAATCCCCAATTCTATGC ATTTAGGTGGATCACTCTCCTGCTAACTCAAGAATTCAATTTCGCTGACAGCATTCACATTTGGGACACTATTTTAAGTG ATCCAGAGGGTCCACAGGAGACTCTTCTCCGGATATGCTGTGCAATGCTAATTCTGATTCGTAAGCGCCTCCTTGCCGGT GATTTCACTTCTAATCTGAAGTTGCTGCAAAATTATCCCACTACAAACATTAGTCATTTGCTCTATGTTGCCAATAAGTT TCGTGTACAGTCAATCTAA
Protein sequence (LotjaGi4g1v0373200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKKKVPDWLNSSLWSSPITTPPSSAAVEDIPAVVTSPEPPRPPSPPVIIQDPPQAQKIQDSRSDDDGDTSPSFSARDVP HQAQLLAELSRKVIDIRELRKLACDGVPDASGIRSTVWKLLLGYLLPDRGLWSSELAKKRTQYKQFKEEVLMNPSEITWK MYNSLSCDSDEAKCERALLSRSEITHGEHPLSLGKTSVWNQFFQDTEIIDQIDRDVMRTHPDMHFFSGDSQFAKLNQEAL KNILIIFAKLNPGVRYVQGMNEVLAPLFYVFKNDPDEENSAFAEADTFFCFVELLSGFRDNFVQQLDNSAVGIRATITRL SQLLKEHDEELWRHLEITSKVNPQFYAFRWITLLLTQEFNFADSIHIWDTILSDPEGPQETLLRICCAMLILIRKRLLAG DFTSNLKLLQNYPTTNISHLLYVANKFRVQSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 431 | 431 | 7.7E-201 | – | |
| PANTHER | 1 | 431 | 431 | 7.7E-201 | – | |
| MobiDBLite | 12 | 79 | 68 | - | – | |
| MobiDBLite | 36 | 51 | 16 | - | – | |
| SUPERFAMILY | 88 | 334 | 247 | 2.38E-48 | ||
| SMART | 103 | 401 | 299 | 2.3E-50 | ||
| ProSiteProfiles | 108 | 375 | 268 | 32.873 | ||
| Gene3D | 192 | 302 | 111 | 7.0E-12 | – | |
| Pfam | 205 | 398 | 194 | 1.4E-40 | ||
| Gene3D | 310 | 431 | 122 | 3.5E-36 | – | |
| SUPERFAMILY | 312 | 428 | 117 | 4.97E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0373200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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