Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374700 |
| Transcript ID | LotjaGi4g1v0374700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT3G13620.1 Amino acid permease family protein; Swiss-Prot: sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620; TrEMBL-Plants: tr|A0A0B2SUP0|A0A0B2SUP0_GLYSO Serine/threonine exchanger SteT; Found in the gene: LotjaGi4g1v0374700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75387121..75389325) extracted from Lotus japonicus Gifu genome v1.2.
CGCTGGTAGAGTACAAGCATGAAATGTGCTAGTTAGTGAATGAAATAGACGCAACTAGTTGATATCTTATTACATCTTCC ACACAAAAGATTATTGTATTTGAGTCGGTAACATTTACATGACACATATTCTCGCGTTGTTGCATTTAACATTTCCACCC TACCTTTTTTAAAAGAAATGTACCACCCGAACAAACGACACATAACAAACAACCCATTAGTGATGGAATCTATTGAGCTG AAAACAACCACATGTTGTTGCATTTAGCTCCTAGAGCAAAAAAAATTCCAAACATAAAGGTTGAACCCCACCTTATTTAA GAAAAATGTACCACATAACAAGCCACCCATTAGTGGTAGAATACATGTTTGGAATTACGGTGAAACTCGGGATGAAGACA AAATCACGTTGAGCAATCGTGATTTTCCGGTGTGTATCTAAACATACAAGAAATCTTTTCAAACTTGTAATCATTGTTCT TCATAAAGGCAGCCTTGCCTTTTACTATTAGTCCCTAATCATTGCACATTACTCACAAATGGAAGACACACTTTACTCTC CAACCCCAATTTCCCAGCAACATCTTCTTTCTGACCACACAGATGATCCAGCTCCAATCCCCAATCCCAAACCACACAAG AAGCTAGCTCTTCTCCCACTCATCTTCCTCATCTACTTTGAAGTTTCAGGTGGCCCTTATGGTGAAGAATCTGCAGTTGG TGCTGCAGGGCCTCTCTTTGCCATCCTTGGCTTTGTGATCTTCCCTTTCATCTGGAGCATCCCAGAGGCTCTTCTCACAG CAGAGCTAGCCACAACCTTCCCTGGCAATGGTGGATTTGTCATATGGGCTAATGAAGCCTTTGGACCCTTTTGGGGCTCC CTCATGGGCTTCTGGAAATTCTTCAGTGGGGTGATAAACCTTGCCTCATACCCAGTTCTCTGCATAGATTATCTCAAGCT TGTAATTCCAGCTTTATCCTCAGGTTTACCTCACTATGTAGCCATATTCCTCTCCACTTCTGTGCTATCCTTTCTCAATT ACTCTGGTTTGGTCATAGTGGGGTATACTGCAGTTGCTCTGGGAGTTATTTCCCTTTTCCCTTTTGTGTTGTTGTCTTTG TTTTCCTTGCCCAAAATTGATCCTAGCAGATGGGTTAGTTTAGGCCAGGAGAAAAAGGATTGGGCACTTTACTTCAACAC AATCTTTTGGAACTTGAATTTTTGGGACAATGCTAGTACTTTAGCTGGTGAAGTTGATCAACCACAGAAGACATTCCCAA AGGCTTTACTCTCTGCTGGATTGCTTACTTGTTTGGCTTATATAATTCCTTTGTTAGCTGCAACTGGTGCTATGCCACTT GATCAAAAAAATTGGGTTGGAGGGTATTTTGCTGATGTGGCTGGGATCATTGCTGGGAATTGGTTGAAATATTGGATGGA AATTGGGGCTGTTTTGTCAATTATTGGACTCTATGAAGCTCAATTGAGCAGTGCTGCATATCAGCTTCTAGGTATGGCAG ATTTAGGATTCATACCTAAAATATTTGGGGAAAGATCAAAGTGGTTTAACACTCCTTGGATGGCAATTTTGGTGTCAACA GTGATAGCAATGGGTGTGTCTTTCTTAACTTTCACAGAGATTATATCTACTGTGAATTTCTTGTACAGTTTGGGGATGCT TTTGGAGTTTGCTTGTTTTCTTAGGTTGAGGAGAAAATTTCCAACATTGAAAAGGCCATTTGAGGTTCCATTGGGATTAT TTGGTCTGGTTCTAATGTGCTTGGTTCCTTCTGTGCTTTTGGTTTATGTGATGAGTGTTGCTACTAAAATTGTTTATGTG GCTAGTGCTTTCTTAACCACTTTTGGGATAGGGCTCTATTTTTTTATGAACCTTTGCAAGTCTAAGAGGTGGATTGAATT CAGTAAAGTAGGAGATAAATTGGAAGAAGAGGAGGATATGATATAGAACTAGCTCATTCTTGATGAAATACTAGTTGTCA TCATCATTATTTTTTACTGAACAAAATTGTAATGTTGGTTTTATCTCATTTTCTTTTGGGTTTATGAATCCGATAGCCAT ATTGTATGTATATTTGTTCATGAGAAATTGAATGATAGTTTACCTTGTATTAGACATGATAATATAATATTTATAAGTTT ATCTATTGTTATGGTTAAGAAATTTAAATTTAAAATCAATTTAGT
CDS sequence (LotjaGi4g1v0374700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACACACTTTACTCTCCAACCCCAATTTCCCAGCAACATCTTCTTTCTGACCACACAGATGATCCAGCTCCAAT CCCCAATCCCAAACCACACAAGAAGCTAGCTCTTCTCCCACTCATCTTCCTCATCTACTTTGAAGTTTCAGGTGGCCCTT ATGGTGAAGAATCTGCAGTTGGTGCTGCAGGGCCTCTCTTTGCCATCCTTGGCTTTGTGATCTTCCCTTTCATCTGGAGC ATCCCAGAGGCTCTTCTCACAGCAGAGCTAGCCACAACCTTCCCTGGCAATGGTGGATTTGTCATATGGGCTAATGAAGC CTTTGGACCCTTTTGGGGCTCCCTCATGGGCTTCTGGAAATTCTTCAGTGGGGTGATAAACCTTGCCTCATACCCAGTTC TCTGCATAGATTATCTCAAGCTTGTAATTCCAGCTTTATCCTCAGGTTTACCTCACTATGTAGCCATATTCCTCTCCACT TCTGTGCTATCCTTTCTCAATTACTCTGGTTTGGTCATAGTGGGGTATACTGCAGTTGCTCTGGGAGTTATTTCCCTTTT CCCTTTTGTGTTGTTGTCTTTGTTTTCCTTGCCCAAAATTGATCCTAGCAGATGGGTTAGTTTAGGCCAGGAGAAAAAGG ATTGGGCACTTTACTTCAACACAATCTTTTGGAACTTGAATTTTTGGGACAATGCTAGTACTTTAGCTGGTGAAGTTGAT CAACCACAGAAGACATTCCCAAAGGCTTTACTCTCTGCTGGATTGCTTACTTGTTTGGCTTATATAATTCCTTTGTTAGC TGCAACTGGTGCTATGCCACTTGATCAAAAAAATTGGGTTGGAGGGTATTTTGCTGATGTGGCTGGGATCATTGCTGGGA ATTGGTTGAAATATTGGATGGAAATTGGGGCTGTTTTGTCAATTATTGGACTCTATGAAGCTCAATTGAGCAGTGCTGCA TATCAGCTTCTAGGTATGGCAGATTTAGGATTCATACCTAAAATATTTGGGGAAAGATCAAAGTGGTTTAACACTCCTTG GATGGCAATTTTGGTGTCAACAGTGATAGCAATGGGTGTGTCTTTCTTAACTTTCACAGAGATTATATCTACTGTGAATT TCTTGTACAGTTTGGGGATGCTTTTGGAGTTTGCTTGTTTTCTTAGGTTGAGGAGAAAATTTCCAACATTGAAAAGGCCA TTTGAGGTTCCATTGGGATTATTTGGTCTGGTTCTAATGTGCTTGGTTCCTTCTGTGCTTTTGGTTTATGTGATGAGTGT TGCTACTAAAATTGTTTATGTGGCTAGTGCTTTCTTAACCACTTTTGGGATAGGGCTCTATTTTTTTATGAACCTTTGCA AGTCTAAGAGGTGGATTGAATTCAGTAAAGTAGGAGATAAATTGGAAGAAGAGGAGGATATGATATAG
Protein sequence (LotjaGi4g1v0374700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDTLYSPTPISQQHLLSDHTDDPAPIPNPKPHKKLALLPLIFLIYFEVSGGPYGEESAVGAAGPLFAILGFVIFPFIWS IPEALLTAELATTFPGNGGFVIWANEAFGPFWGSLMGFWKFFSGVINLASYPVLCIDYLKLVIPALSSGLPHYVAIFLST SVLSFLNYSGLVIVGYTAVALGVISLFPFVLLSLFSLPKIDPSRWVSLGQEKKDWALYFNTIFWNLNFWDNASTLAGEVD QPQKTFPKALLSAGLLTCLAYIIPLLAATGAMPLDQKNWVGGYFADVAGIIAGNWLKYWMEIGAVLSIIGLYEAQLSSAA YQLLGMADLGFIPKIFGERSKWFNTPWMAILVSTVIAMGVSFLTFTEIISTVNFLYSLGMLLEFACFLRLRRKFPTLKRP FEVPLGLFGLVLMCLVPSVLLVYVMSVATKIVYVASAFLTTFGIGLYFFMNLCKSKRWIEFSKVGDKLEEEEDMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 23 | 472 | 450 | 4.4E-262 | – | |
| PANTHER | 23 | 472 | 450 | 4.4E-262 | – | |
| PIRSF | 29 | 474 | 446 | 1.6E-60 | – | |
| Phobius | 36 | 54 | 19 | - | – | |
| TMHMM | 36 | 55 | 20 | - | – | |
| Gene3D | 52 | 470 | 419 | 9.9E-46 | – | |
| Phobius | 55 | 59 | 5 | - | – | |
| Pfam | 59 | 423 | 365 | 2.4E-31 | ||
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 60 | 79 | 20 | - | – | |
| Phobius | 80 | 85 | 6 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| Phobius | 111 | 134 | 24 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 135 | 140 | 6 | - | – | |
| Phobius | 141 | 166 | 26 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 167 | 171 | 5 | - | – | |
| Phobius | 172 | 195 | 24 | - | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 196 | 214 | 19 | - | – | |
| Phobius | 215 | 237 | 23 | - | – | |
| Phobius | 238 | 248 | 11 | - | – | |
| Phobius | 249 | 267 | 19 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 268 | 278 | 11 | - | – | |
| Phobius | 279 | 296 | 18 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 297 | 301 | 5 | - | – | |
| Phobius | 302 | 324 | 23 | - | – | |
| Phobius | 325 | 344 | 20 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 345 | 365 | 21 | - | – | |
| Phobius | 366 | 370 | 5 | - | – | |
| TMHMM | 368 | 390 | 23 | - | – | |
| Phobius | 371 | 391 | 21 | - | – | |
| Phobius | 392 | 402 | 11 | - | – | |
| TMHMM | 403 | 425 | 23 | - | – | |
| Phobius | 403 | 425 | 23 | - | – | |
| Phobius | 426 | 430 | 5 | - | – | |
| TMHMM | 431 | 453 | 23 | - | – | |
| Phobius | 431 | 453 | 23 | - | – | |
| Phobius | 454 | 475 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0374700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…