Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0377600 |
| Transcript ID | LotjaGi4g1v0377600.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 protein; TAIR: AT2G42590.3 general regulatory factor 9; Swiss-Prot: sp|Q96452|1433C_SOYBN 14-3-3-like protein C; TrEMBL-Plants: tr|I3SJQ1|I3SJQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0377600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75647087..75650003) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCCACCAAGGAACGTGACAACTTCGTCTACATCGCCAAACTCGCTGAACAAGCCGAGCGCTATGAAGGTCCCTT CTCTCTCTCACCCATTTCCTTACAACTTCCAGTTTCTCATATAGTTTTTTTTTTCTTTTCAATATTTGATTCCTCTGCAT AGAGATTTAAGTGATTGTCTCCACTGTTCTGAGCTTTAAATTTTTTCAATATTTTGTTTCTGGTTAGCTTTTTTTTTATA TTTTTTTTACAATTTATTTGAATTTTTATTTTTTTTGGAATTTAGAGGAAAACTGGAGTTGGGGTTTTGAAAATTTTTAA TTTTACTAAGAAAAATTGAAAATTTATTTTTTATGTTTTTGTGGGTTAGAAATGGTGGAGGCAATGAAGAATGTGGCGAA GCTAAATGTTGAGTTGACTGTTGAGGAGAGAAACCTTCTGTCAGTTGGGTACAAGAATGTGGTGGGTGCTCGCCGGGCTT CGTGGAGGATTCTCTCCTCAATTGAGCAGAAGGAAGAAGCTAAAGGGAATGATGTGAGTGTGAAGAGGATAAGGGAGTAT AGGCAGAAGGTGGAGTCTGAGTTGTCCAATATATGCAGTGATATCATGATTGTTATTGATGAGCACCTTATTCCATCGAG CTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATGTGAGTGGTTTTTGCTCTTAGCCTAGCTCTATGTCTCTCTCTCA GAATTTAGGATTTCATTGTTTTGATTGTCTCCTTTGTTATTTGCAGGAAAGGAGACTACTATCGGTACCTGGCGGAATTC AAGTCTGGTGATGATAGAAAAGAGGCTGCTGATCAATCCATGAAAGCATATCAGGTTGGCTTGTGTTCAGACCTCTTGTA TCTGTCTGTTTTAAAAGATCTTGATGTTTGTTATATCTGTCCTGCCTGGTAATTCATGATTCATGTCATGGATGATATGG TTGCTTGATATGTCTCTATTAAGTGAGGTTCAGTGAAGAATAAAGTGTTTCGGTTTAATTATCAAGTCTTACTTATTGGT ATCTTTATATTTCTTGGGTGATGAAATTAATAAATTTCTGACAAAAGGACTTATATTATTGACCTGTGTTACTGGATAAA TTGTGAATCAAAAGTCATTATTGGGGATATTAACTTTGAAGGGGTGTTTCTAATCCAGGTAGTCACTCAAATTCGTGACT TTTATCATAGAATTACCGATCTTACAATATTTACGGTGGATTTCAATCTTGTTTCCACAAAAGATTATCAGCTGATGAGA TTGTGTGGAATCATCGGGAAATCTTATAGACAACAGAATTGTCGGTCTTTATAAGCTGAATTTGACAGGACTAGCAGCAC ACTAACAACCAAGTAAAACAAACCAATGACCCAACAATCTGTGATGTCGACCCAGCTAATGATGTACTGTGATCTGTCTT CGTCTCGCTAGTCATGCCCTCCTCTTCTCTGTTTTTGTCTCTCACATTTTCATCTCTCTCTGTCTGTCAGCCCTCAACTA TTGAAGCCTTGTCTATCATCTCTCTCTGTTTTTGTCCCTACCGGAACTCTCTGTCTCTTATTTATTTTGGGCCTTCTAAG TTCATATACATTCACTCTTTGACTTCCTGGTGAACTATACTTTTCCTTTTATGCTCTTTTCTTTTCTTACATAATTACTA TGAAATATTAATATTAACATATTACTAAAACAATTACAAAAAAATATCTGATGACTTAAATTATTTATATTATTACATTT ATTATTCAGTTGTATTATCAATTTATCATAAATTTTATATCAAAATGTATTAATATTTTGTAGGATTGTGGTCCGTGTTA TGATCCCATGTTTTACATTTTTTTCACTCCCTGAATTGACGTAGATTATTGATATTAGCTACCTCGATCCTAATGGTTCT TTATCACTTAGATTGTGTACTTATTAGGTAGGAAAAGCATAATTTGAGGATTCGAAGTTGATACAGGCTTGGTTTGTGAG TAAAATAAATGAATGGGTAGAGGAGTCACTTTTACGTGTTCTGTTAATATTTGGGGAGAGGAAAAATAGGAGGTAGTGCT TATCATCAGGCATGACATTCATGACACCTTGTCTTTGTTTTATGACATTCATGATATCTGACATTTATTTAGATGAAGGC ATCACCAATGTGACGTTTGCTGTTGAATTGCCTAAGTATTTTTCCAACTGTTCATGTTTATCTGAACAAATCATAAATTT TGCAGTTGGCTTCCACTACAGCAGAGACTGAATTACCTCCCACTCATCCCATTCGATTGGGCTTGGCTTTGAACTTCTCT GTCTTCTACTATGAAATTTTGAACTCTCCTGAAAGGTATACCAATTTTTTTTTTCATGATGGTATTATTGTTTAACATCC CAACTTCCTTTGTTCATGCACTAAATGTATACTTAGTCTGTTTAATGGATTTAACATGGTACTCCTCATATTTCAGGGCA TGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAACTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCAC ACTAATTATGCAGCTTCTGAGGGACAACCTCACCTTGTGGACCTCTGACATCCCTGAAGAAGGAGGTAATCATTTATAGA TATTAGTGTTCATTGCCACTATGTTAGTTGGACTTGGTCTGCAATGTAAATGAAATATATGAATTTTTTGTTTTATAGAA TGTTCATTGGTATAGTCGGCATTAATGTATGGTTATTGTGGTTGTTTGTTCATGGTCATGGCTATTGTGATTTCCTTTGT TTGATGTCTGTTTCATTTTTTGAGATAAGTTTATGCTTGTGGCCTGCTAAGTTTATCCCATGTTGATCAAAATTCCAGAA TATTGAAGAAAAGCCTGTACCTAACAGTATCAGTTGA
CDS sequence (LotjaGi4g1v0377600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCACCAAGGAACGTGACAACTTCGTCTACATCGCCAAACTCGCTGAACAAGCCGAGCGCTATGAAGAAATGGT GGAGGCAATGAAGAATGTGGCGAAGCTAAATGTTGAGTTGACTGTTGAGGAGAGAAACCTTCTGTCAGTTGGGTACAAGA ATGTGGTGGGTGCTCGCCGGGCTTCGTGGAGGATTCTCTCCTCAATTGAGCAGAAGGAAGAAGCTAAAGGGAATGATGTG AGTGTGAAGAGGATAAGGGAGTATAGGCAGAAGGTGGAGTCTGAGTTGTCCAATATATGCAGTGATATCATGATTGTTAT TGATGAGCACCTTATTCCATCGAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATGAAAGGAGACTACTATCGGT ACCTGGCGGAATTCAAGTCTGGTGATGATAGAAAAGAGGCTGCTGATCAATCCATGAAAGCATATCAGTTGGCTTCCACT ACAGCAGAGACTGAATTACCTCCCACTCATCCCATTCGATTGGGCTTGGCTTTGAACTTCTCTGTCTTCTACTATGAAAT TTTGAACTCTCCTGAAAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAACTGGATACTCTGAGTG AGGAGTCTTACAAAGACAGCACACTAATTATGCAGCTTCTGAGGGACAACCTCACCTTGTGGACCTCTGACATCCCTGAA GAAGGAGCAAAATTCCAGAATATTGAAGAAAAGCCTGTACCTAACAGTATCAGTTGA
Protein sequence (LotjaGi4g1v0377600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTKERDNFVYIAKLAEQAERYEEMVEAMKNVAKLNVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNDV SVKRIREYRQKVESELSNICSDIMIVIDEHLIPSSSAGEPSVFFYKMKGDYYRYLAEFKSGDDRKEAADQSMKAYQLAST TAETELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE EGAKFQNIEEKPVPNSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 247 | 247 | 3.7E-118 | ||
| Gene3D | 1 | 248 | 248 | 1.0E-123 | ||
| PANTHER | 3 | 246 | 244 | 1.3E-151 | – | |
| PANTHER | 3 | 246 | 244 | 1.3E-151 | ||
| SUPERFAMILY | 6 | 237 | 232 | 2.88E-103 | ||
| SMART | 7 | 250 | 244 | 5.3E-172 | ||
| Coils | 13 | 46 | 34 | - | – | |
| Pfam | 14 | 235 | 222 | 7.7E-105 | ||
| PRINTS | 39 | 68 | 30 | 3.0E-84 | ||
| ProSitePatterns | 45 | 55 | 11 | - | ||
| PRINTS | 88 | 112 | 25 | 3.0E-84 | ||
| PRINTS | 119 | 141 | 23 | 3.0E-84 | ||
| PRINTS | 154 | 180 | 27 | 3.0E-84 | ||
| PRINTS | 181 | 207 | 27 | 3.0E-84 | ||
| PRINTS | 208 | 237 | 30 | 3.0E-84 | ||
| ProSitePatterns | 217 | 236 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0377600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…