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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0377600 |
| Transcript ID | LotjaGi4g1v0377600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 protein; TAIR: AT2G42590.1 general regulatory factor 9; Swiss-Prot: sp|Q96452|1433C_SOYBN 14-3-3-like protein C; TrEMBL-Plants: tr|I3SJQ1|I3SJQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0377600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75647087..75650003) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCCACCAAGGAACGTGACAACTTCGTCTACATCGCCAAACTCGCTGAACAAGCCGAGCGCTATGAAGGTCCCTT CTCTCTCTCACCCATTTCCTTACAACTTCCAGTTTCTCATATAGTTTTTTTTTTCTTTTCAATATTTGATTCCTCTGCAT AGAGATTTAAGTGATTGTCTCCACTGTTCTGAGCTTTAAATTTTTTCAATATTTTGTTTCTGGTTAGCTTTTTTTTTATA TTTTTTTTACAATTTATTTGAATTTTTATTTTTTTTGGAATTTAGAGGAAAACTGGAGTTGGGGTTTTGAAAATTTTTAA TTTTACTAAGAAAAATTGAAAATTTATTTTTTATGTTTTTGTGGGTTAGAAATGGTGGAGGCAATGAAGAATGTGGCGAA GCTAAATGTTGAGTTGACTGTTGAGGAGAGAAACCTTCTGTCAGTTGGGTACAAGAATGTGGTGGGTGCTCGCCGGGCTT CGTGGAGGATTCTCTCCTCAATTGAGCAGAAGGAAGAAGCTAAAGGGAATGATGTGAGTGTGAAGAGGATAAGGGAGTAT AGGCAGAAGGTGGAGTCTGAGTTGTCCAATATATGCAGTGATATCATGATTGTTATTGATGAGCACCTTATTCCATCGAG CTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATGTGAGTGGTTTTTGCTCTTAGCCTAGCTCTATGTCTCTCTCTCA GAATTTAGGATTTCATTGTTTTGATTGTCTCCTTTGTTATTTGCAGGAAAGGAGACTACTATCGGTACCTGGCGGAATTC AAGTCTGGTGATGATAGAAAAGAGGCTGCTGATCAATCCATGAAAGCATATCAGGTTGGCTTGTGTTCAGACCTCTTGTA TCTGTCTGTTTTAAAAGATCTTGATGTTTGTTATATCTGTCCTGCCTGGTAATTCATGATTCATGTCATGGATGATATGG TTGCTTGATATGTCTCTATTAAGTGAGGTTCAGTGAAGAATAAAGTGTTTCGGTTTAATTATCAAGTCTTACTTATTGGT ATCTTTATATTTCTTGGGTGATGAAATTAATAAATTTCTGACAAAAGGACTTATATTATTGACCTGTGTTACTGGATAAA TTGTGAATCAAAAGTCATTATTGGGGATATTAACTTTGAAGGGGTGTTTCTAATCCAGGTAGTCACTCAAATTCGTGACT TTTATCATAGAATTACCGATCTTACAATATTTACGGTGGATTTCAATCTTGTTTCCACAAAAGATTATCAGCTGATGAGA TTGTGTGGAATCATCGGGAAATCTTATAGACAACAGAATTGTCGGTCTTTATAAGCTGAATTTGACAGGACTAGCAGCAC ACTAACAACCAAGTAAAACAAACCAATGACCCAACAATCTGTGATGTCGACCCAGCTAATGATGTACTGTGATCTGTCTT CGTCTCGCTAGTCATGCCCTCCTCTTCTCTGTTTTTGTCTCTCACATTTTCATCTCTCTCTGTCTGTCAGCCCTCAACTA TTGAAGCCTTGTCTATCATCTCTCTCTGTTTTTGTCCCTACCGGAACTCTCTGTCTCTTATTTATTTTGGGCCTTCTAAG TTCATATACATTCACTCTTTGACTTCCTGGTGAACTATACTTTTCCTTTTATGCTCTTTTCTTTTCTTACATAATTACTA TGAAATATTAATATTAACATATTACTAAAACAATTACAAAAAAATATCTGATGACTTAAATTATTTATATTATTACATTT ATTATTCAGTTGTATTATCAATTTATCATAAATTTTATATCAAAATGTATTAATATTTTGTAGGATTGTGGTCCGTGTTA TGATCCCATGTTTTACATTTTTTTCACTCCCTGAATTGACGTAGATTATTGATATTAGCTACCTCGATCCTAATGGTTCT TTATCACTTAGATTGTGTACTTATTAGGTAGGAAAAGCATAATTTGAGGATTCGAAGTTGATACAGGCTTGGTTTGTGAG TAAAATAAATGAATGGGTAGAGGAGTCACTTTTACGTGTTCTGTTAATATTTGGGGAGAGGAAAAATAGGAGGTAGTGCT TATCATCAGGCATGACATTCATGACACCTTGTCTTTGTTTTATGACATTCATGATATCTGACATTTATTTAGATGAAGGC ATCACCAATGTGACGTTTGCTGTTGAATTGCCTAAGTATTTTTCCAACTGTTCATGTTTATCTGAACAAATCATAAATTT TGCAGTTGGCTTCCACTACAGCAGAGACTGAATTACCTCCCACTCATCCCATTCGATTGGGCTTGGCTTTGAACTTCTCT GTCTTCTACTATGAAATTTTGAACTCTCCTGAAAGGTATACCAATTTTTTTTTTCATGATGGTATTATTGTTTAACATCC CAACTTCCTTTGTTCATGCACTAAATGTATACTTAGTCTGTTTAATGGATTTAACATGGTACTCCTCATATTTCAGGGCA TGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAACTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCAC ACTAATTATGCAGCTTCTGAGGGACAACCTCACCTTGTGGACCTCTGACATCCCTGAAGAAGGAGGTAATCATTTATAGA TATTAGTGTTCATTGCCACTATGTTAGTTGGACTTGGTCTGCAATGTAAATGAAATATATGAATTTTTTGTTTTATAGAA TGTTCATTGGTATAGTCGGCATTAATGTATGGTTATTGTGGTTGTTTGTTCATGGTCATGGCTATTGTGATTTCCTTTGT TTGATGTCTGTTTCATTTTTTGAGATAAGTTTATGCTTGTGGCCTGCTAAGTTTATCCCATGTTGATCAAAATTCCAGAA TATTGAAGAAAAGCCTGTACCTAACAGTATCAGTTGA
CDS sequence (LotjaGi4g1v0377600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGGCAATGAAGAATGTGGCGAAGCTAAATGTTGAGTTGACTGTTGAGGAGAGAAACCTTCTGTCAGTTGGGTA CAAGAATGTGGTGGGTGCTCGCCGGGCTTCGTGGAGGATTCTCTCCTCAATTGAGCAGAAGGAAGAAGCTAAAGGGAATG ATGTGAGTGTGAAGAGGATAAGGGAGTATAGGCAGAAGGTGGAGTCTGAGTTGTCCAATATATGCAGTGATATCATGATT GTTATTGATGAGCACCTTATTCCATCGAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATGAAAGGAGACTACTA TCGGTACCTGGCGGAATTCAAGTCTGGTGATGATAGAAAAGAGGCTGCTGATCAATCCATGAAAGCATATCAGTTGGCTT CCACTACAGCAGAGACTGAATTACCTCCCACTCATCCCATTCGATTGGGCTTGGCTTTGAACTTCTCTGTCTTCTACTAT GAAATTTTGAACTCTCCTGAAAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAACTGGATACTCT GAGTGAGGAGTCTTACAAAGACAGCACACTAATTATGCAGCTTCTGAGGGACAACCTCACCTTGTGGACCTCTGACATCC CTGAAGAAGGAGCAAAATTCCAGAATATTGAAGAAAAGCCTGTACCTAACAGTATCAGTTGA
Protein sequence (LotjaGi4g1v0377600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEAMKNVAKLNVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNDVSVKRIREYRQKVESELSNICSDIMI VIDEHLIPSSSAGEPSVFFYKMKGDYYRYLAEFKSGDDRKEAADQSMKAYQLASTTAETELPPTHPIRLGLALNFSVFYY EILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEEGAKFQNIEEKPVPNSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| Pfam | 1 | 210 | 210 | 5.4E-98 | ||
| SMART | 1 | 225 | 225 | 1.1E-148 | ||
| PANTHER | 1 | 221 | 221 | 4.2E-137 | ||
| Gene3D | 1 | 223 | 223 | 2.0E-112 | ||
| PIRSF | 1 | 222 | 222 | 1.4E-107 | ||
| PANTHER | 1 | 221 | 221 | 4.2E-137 | – | |
| SUPERFAMILY | 2 | 217 | 216 | 1.44E-95 | ||
| PRINTS | 14 | 43 | 30 | 2.6E-84 | ||
| ProSitePatterns | 20 | 30 | 11 | - | ||
| PRINTS | 63 | 87 | 25 | 2.6E-84 | ||
| PRINTS | 94 | 116 | 23 | 2.6E-84 | ||
| PRINTS | 129 | 155 | 27 | 2.6E-84 | ||
| PRINTS | 156 | 182 | 27 | 2.6E-84 | ||
| PRINTS | 183 | 212 | 30 | 2.6E-84 | ||
| ProSitePatterns | 192 | 211 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0377600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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