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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0379800 |
| Transcript ID | LotjaGi4g1v0379800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G29280.1 WRKY DNA-binding protein 65; Swiss-Prot: sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65; TrEMBL-Plants: tr|A0A0R4J3W0|A0A0R4J3W0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0379800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75907248..75910214) extracted from Lotus japonicus Gifu genome v1.2.
AACAAATAAAGCCAAAGTAAAATATAGATTGAGTTTTTCTTAGAAAGGGTGCCCAGAAAAGACAAAAAGGGGGTGATAGT TCACTTCAACTAATCAACAGTCTTATCCTTAACCAAAATTTTCATATAGAATAAGGACTAAAAAAACCAAGGGTTGCTTT CTCATGACATATACATATTCGTATATTGATATATAAATTAGAGTGAGGTTGGATATGATGGAGTATTTGCTCCCACGTCC TGTAATAAACAAAGACTATAGAGCTAGCGTAGCCAATCTGTCAACATGAATCCCCATTTTTTAAGGCCAATGATCTCCCT TCTCTCACCTCTTCTCTTTTCTTTAATTGTCTTTATTGCCTTCTATTCTGTGTACTCTAGCTAACCCCATTTCCATGCTT AGCTGAATTGCCACATTAATTATCATCATCATCGATCATCACTACCTTGTAGCTGGATCAAGGGTCAAGATCCAACCCAA ATCTCAAGAAATGGACAGTAAATTCAGCAACAACAGGCACCGTTATATCAATGAATTACTAGAAGAAGATGCTGAAGTAG CTCATCATCATCAAGAAAACATTGCTGATTCCCCTCCTTCTTCCACCGCGTTTAACATCGATGGCTTGGTCACTTCCTCC TCCACTTCTTCAGCTAAGAGAAGGTTTGTCTAGCTCCCCTCTCTATCTCTCTCACACACACACTCTCTACACACAAGATG TGTAGAGTTGAAGGGTAAAATAGCGAGTTGAAACAGCTTAATTCTGGGATTCAGAAGCTACTGATTGCGCAAATTCATCT CCGAAATTGATTATGACTTTGGACTCAATTGTTGAGACATTTCGAAACATGTACTAAATGGGATTTGTTTTTGTTTTGTT ATAAAAGCAGGCGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAGACGGAAGGATCAAGGCTAAAAGCAGAA AACAACACACCACCCTCCGATTCATGGGCATGGAGAAAGTACGGCCAAAAACCCATCAAAGGTTCCCCATATCCCAGGTA CACACCAAGTAACAATTCCATTTCCATAAATTGAATCTATATATTGACATATGCTTGATTTTGAGGGTATGCATGTTTGC ATAATAATTTGCCAATCATTGGTTAAATTTCACTAAAATACTATTCAAAACACATATTAATGATTGGTTACTTTATGATT TGATGATGCCAAGAAATATAAGAGTCTATCGGTTAGAAAGTATGAAAACGTGAACATAGCTTGATGCACTTTTTGAGACA TAAGAATGTAATTTTTCTATGTTCATACTTTCTAATCAGTATCCAAACAAATTGTAAGTTTGATTGAATTTTCTCAAATA AGCTTAGCCATGAGTAAATTAAAACCCACTTTAGACTGTGATTTCAAAACATGTATGCTAATTAAGGTTTTGGAGATGAC AACAACAAACTGAATGAAATTTTATGTGTTGTGAAATTGGTGACACAGAGGGTACTACCGGTGTAGCAGTTCCAAAGGTT GTCCGGCGAGGAAACAAGTGGAGAGAAGCCGCGCGGACCCCACCATGCTCGTCGTAACCTACTCCTCCGAGCACAACCAC CCGTGGCCGGTTTCCAGGAGCAACAACCAAGCTAAACCGGCAGCCAAGAAGCCCGAACCGGAACCGGAACCGGTCGAGCC GGAGGAGAAGTTGGAGGACCTGGGCGGCGAAAACGAGCTGGGGTGGCTGGGAGTAGAGATGGAGACGGCGTCATCCGCTG CCGCCATGCTCGAGAGCCCGATCATGGCGCCGGAGTTTGACGAGGCTGACGTGGCGTCGGTGTTTCTGCCGATGAGGGAG GAGGACGAGCTGCTGTTCGCTGACCTCGGGGAGCTGCCGGAGTGCTCCGCGGTGTTCCGGCATGGTTTGGTGGATGTCCG GCGGCGGCTAGCGACGCCGTGGTGCGGGACCACAACAAGTTGACATCTATCCCGTGTGACACGTTCCAAGAAAAAGATAC CCGGATTTTTAAATTTTATCTTCTTGTCATCAGATTTGAATTTGAATTTTTTATTTTATTTTTTTCTTTAATGCTACTAG TTCACTTGATAGTAGATTGAAGAAAAAAAGGAAAATAGAACAAGTGTGGATGGAGATGGGAAGCATGGGATAAGGAATAA AACAGGGAAGGATAAGAGGGATTGGTTGAATGTAAATGTGTCTTTCAAAACCAGGTTTATATGTGGAAAAGTGATTTTAG AACAAACTTTTAGTGTTTGTTTACTTTTATAGTCAAACTAATTTATTATTTTCCAATCTAGAAACCCACGAGATTTAAAC GCGTACTAATGTTAATTTAGAAAATGATGTCACGACATTCGTTTGATGTGGTATTTAAAGTAAGAAATGAACATAAGAGA AATAAGTAATGAATGTGATATTTGAAAGAATAGATGTAAAGAAAAAATTAAATATATGTTAAGTGTTTACATTGTTTGTA TGTCTAAGTATCATCACTGTTTTAACACTGTCAAAAAAAATCATCACTGTTTTAACTTTCATGAAAGAAAAATTGTAGTA TCTTCTAAAAGTATTGGTGAGTTCTACTATCAATAGAATTGAAGCTTGTAGTTGTAGGGGGTTATCCACCCTTTACATAT ATCTCAGTTAGACAAACGATCAGACCGCACACCTAATAGACTCAAAGCTTTGAGGCAGGGTCGTGTAAGGCCTTAGTTAA AATAAGCAATTGCCTAAGGCCCCCAAGAATATATAGGCCTCCGAATATATTTAGTATGTAGACATGATATATTACTGAGA CTTGAGATGGTAATGAAATAATGAAAAATTAGATAACATGAATTGCAACATGAGCAATGCAATGTAAGAACTTAGAAGTG CTAAACTCAAAAAATTAAATTGTGTTACTCATAATAGTTTTTAATAACTTATATATATATATATTATTGTATATGTTTGC TCTTCCC
CDS sequence (LotjaGi4g1v0379800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGTAAATTCAGCAACAACAGGCACCGTTATATCAATGAATTACTAGAAGAAGATGCTGAAGTAGCTCATCATCA TCAAGAAAACATTGCTGATTCCCCTCCTTCTTCCACCGCGTTTAACATCGATGGCTTGGTCACTTCCTCCTCCACTTCTT CAGCTAAGAGAAGGCGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAGACGGAAGGATCAAGGCTAAAAGCA GAAAACAACACACCACCCTCCGATTCATGGGCATGGAGAAAGTACGGCCAAAAACCCATCAAAGGTTCCCCATATCCCAG AGGGTACTACCGGTGTAGCAGTTCCAAAGGTTGTCCGGCGAGGAAACAAGTGGAGAGAAGCCGCGCGGACCCCACCATGC TCGTCGTAACCTACTCCTCCGAGCACAACCACCCGTGGCCGGTTTCCAGGAGCAACAACCAAGCTAAACCGGCAGCCAAG AAGCCCGAACCGGAACCGGAACCGGTCGAGCCGGAGGAGAAGTTGGAGGACCTGGGCGGCGAAAACGAGCTGGGGTGGCT GGGAGTAGAGATGGAGACGGCGTCATCCGCTGCCGCCATGCTCGAGAGCCCGATCATGGCGCCGGAGTTTGACGAGGCTG ACGTGGCGTCGGTGTTTCTGCCGATGAGGGAGGAGGACGAGCTGCTGTTCGCTGACCTCGGGGAGCTGCCGGAGTGCTCC GCGGTGTTCCGGCATGGTTTGGTGGATGTCCGGCGGCGGCTAGCGACGCCGTGGTGCGGGACCACAACAAGTTGA
Protein sequence (LotjaGi4g1v0379800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSKFSNNRHRYINELLEEDAEVAHHHQENIADSPPSSTAFNIDGLVTSSSTSSAKRRRAIQKRVVQIPIKETEGSRLKA ENNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRADPTMLVVTYSSEHNHPWPVSRSNNQAKPAAK KPEPEPEPVEPEEKLEDLGGENELGWLGVEMETASSAAAMLESPIMAPEFDEADVASVFLPMREEDELLFADLGELPECS AVFRHGLVDVRRRLATPWCGTTTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 262 | 251 | 2.2E-107 | – | |
| PANTHER | 12 | 262 | 251 | 2.2E-107 | – | |
| MobiDBLite | 20 | 60 | 41 | - | – | |
| MobiDBLite | 31 | 56 | 26 | - | – | |
| Gene3D | 71 | 148 | 78 | 7.1E-30 | ||
| SUPERFAMILY | 83 | 147 | 65 | 4.84E-27 | ||
| SMART | 86 | 146 | 61 | 1.8E-37 | ||
| ProSiteProfiles | 87 | 147 | 61 | 32.592 | ||
| Pfam | 88 | 145 | 58 | 1.4E-26 | ||
| MobiDBLite | 142 | 156 | 15 | - | – | |
| MobiDBLite | 142 | 175 | 34 | - | – | |
| MobiDBLite | 160 | 175 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0379800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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