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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0380600 |
| Transcript ID | LotjaGi4g1v0380600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G60490.1 FASCICLIN-like arabinogalactan-protein 12; Swiss-Prot: sp|Q8LEE9|FLA12_ARATH Fasciclin-like arabinogalactan protein 12; TrEMBL-Plants: tr|I3SEV8|I3SEV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0380600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75972977..75974482) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCACCTATAAAAAACCCTCCCCCCATGACACTTTCCACACATCAAACACTTTGCAATAACAAAAACTACCCATTCAT TTGTGATTTTTTCTTTCATAGATCCTAGAGCATTCAATTACCAACAAGATGATGAAGCAAATTCTCTTCTCATTCTTATT TCTTGCCCCAATTTTTTCAATCACCACTTTAGCTCAATCGCCTGCTGCAGCCCCTAAACCGCCAGCAAAACCAGCTCCAA CAAAACCTTCCCCTGCCACACCAGCTCCAGCACCATCAAAACCATTAGTCCCAGCATTACCCCAATCACCAATGGTGAAT CCTGACTCTTCAGGCAACCAAGATGTCGTCAAGATTCTGAGGAAGGCCAAATCATTCAACACGCTGATCCGTTTACTGAA GACCACCCAAATCATCAACCAAGTCAATGCACAACTTGTTGCCACAAAAAATGGAGGACTAACCATTCTTGCACCTGATG ATGGTGCATTCTCACAGCTCAAAGCAGGGTTCTTCAATTCTCTAGGAGAGAGGCAACAAAAGGAGCTGATCCAGTTCCAT GTTCTTCCTGTTTATGTTTCAAGCTCAAATTTTGACTCGCTCAGCAACCCTGTGATGACTCTGGCTAGTGATAGCCCCTC AAGTTTTGAGCTCAATGTGACTGCTTATGGTAACAGTGTGAACATTTCAACTGGGGTGGTTGATGTCACCATCACAGGCA TTGTGTACTCTGATAAGACACTTGCCATATACCGTGTGGACAAGGTGCTTATTCCTTTGGATTTCAAAAAGCCTAAGCCT ATTGCTCCGGCACCGGCTCTGGCTAAGGCCCCGAAAGCTGATAAGGAGAATTCATCTGCAGAAGATGATGATGATCAGGG TCAGGGAACAAAGAACAGCTCTGGAGCAAACAGATTGATTAGTAGCATTCGCGGAACAACGTTGGTACTGTCTCTTGTGC TTGCTGCTGCTGCAGCAGCAACTATGTCATGATGAAGAACATCAATCTTTTGTGCACAGAACAAGCATGCTATTGCTGTG GACTTGTGTTTATGTTGCTTTCTTCTTGGCTTGTGTATATTGCTGAGATGTGTATTTTTTGTGAGCCTTGTGAAAATTTG CTTTGTATTCTTGTTTTGTCATTGAAACAATATATGTGATTGTTTTCTGTCGAAGACAAAAAGAATATCTATAATTGCTT TTCTCAATTAATTCTGTGCTTTTCTTAATTCTATGCACTTTGAGAATCTCCATCATCAGTGAGTATTAGCAGGGTAGATC AATTCCTTCCTAATTTGTTGAGAGTGAAGAGTGAAGACTGAGGGAAGCATATTAGTCAGAATGATGTATACGAGTAATGA TATATACACACCTCACTTTTTCTTCCATCTCATTTCCACACATTTTTCTTACCTTATCTTATTAGGTGGAGATGGAATTA ATTTGTGTACTAAACATTATTATATGTATACCTTTCAAAATAAGGTTCAAACTTTGTTTAGCATCC
CDS sequence (LotjaGi4g1v0380600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGCAAATTCTCTTCTCATTCTTATTTCTTGCCCCAATTTTTTCAATCACCACTTTAGCTCAATCGCCTGCTGC AGCCCCTAAACCGCCAGCAAAACCAGCTCCAACAAAACCTTCCCCTGCCACACCAGCTCCAGCACCATCAAAACCATTAG TCCCAGCATTACCCCAATCACCAATGGTGAATCCTGACTCTTCAGGCAACCAAGATGTCGTCAAGATTCTGAGGAAGGCC AAATCATTCAACACGCTGATCCGTTTACTGAAGACCACCCAAATCATCAACCAAGTCAATGCACAACTTGTTGCCACAAA AAATGGAGGACTAACCATTCTTGCACCTGATGATGGTGCATTCTCACAGCTCAAAGCAGGGTTCTTCAATTCTCTAGGAG AGAGGCAACAAAAGGAGCTGATCCAGTTCCATGTTCTTCCTGTTTATGTTTCAAGCTCAAATTTTGACTCGCTCAGCAAC CCTGTGATGACTCTGGCTAGTGATAGCCCCTCAAGTTTTGAGCTCAATGTGACTGCTTATGGTAACAGTGTGAACATTTC AACTGGGGTGGTTGATGTCACCATCACAGGCATTGTGTACTCTGATAAGACACTTGCCATATACCGTGTGGACAAGGTGC TTATTCCTTTGGATTTCAAAAAGCCTAAGCCTATTGCTCCGGCACCGGCTCTGGCTAAGGCCCCGAAAGCTGATAAGGAG AATTCATCTGCAGAAGATGATGATGATCAGGGTCAGGGAACAAAGAACAGCTCTGGAGCAAACAGATTGATTAGTAGCAT TCGCGGAACAACGTTGGTACTGTCTCTTGTGCTTGCTGCTGCTGCAGCAGCAACTATGTCATGA
Protein sequence (LotjaGi4g1v0380600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKQILFSFLFLAPIFSITTLAQSPAAAPKPPAKPAPTKPSPATPAPAPSKPLVPALPQSPMVNPDSSGNQDVVKILRKA KSFNTLIRLLKTTQIINQVNAQLVATKNGGLTILAPDDGAFSQLKAGFFNSLGERQQKELIQFHVLPVYVSSSNFDSLSN PVMTLASDSPSSFELNVTAYGNSVNISTGVVDVTITGIVYSDKTLAIYRVDKVLIPLDFKKPKPIAPAPALAKAPKADKE NSSAEDDDDQGQGTKNSSGANRLISSIRGTTLVLSLVLAAAAAATMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 2 | 284 | 283 | 3.5E-140 | – | |
| PANTHER | 2 | 284 | 283 | 3.5E-140 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 22 | 6 | - | – | |
| Phobius | 23 | 287 | 265 | - | – | |
| MobiDBLite | 26 | 69 | 44 | - | – | |
| MobiDBLite | 28 | 59 | 32 | - | – | |
| Gene3D | 53 | 217 | 165 | 4.0E-14 | ||
| ProSiteProfiles | 70 | 214 | 145 | 18.393 | ||
| SUPERFAMILY | 76 | 217 | 142 | 2.09E-22 | ||
| Pfam | 82 | 216 | 135 | 5.0E-18 | ||
| SMART | 112 | 217 | 106 | 1.2E-12 | ||
| MobiDBLite | 229 | 260 | 32 | - | – | |
| MobiDBLite | 238 | 252 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0380600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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