Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0380900 |
| Transcript ID | LotjaGi4g1v0380900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT1G06920.1 ovate family protein 4; Swiss-Prot: sp|F4HNU8|OFP4_ARATH Transcription repressor OFP4; TrEMBL-Plants: tr|A0A151RVF7|A0A151RVF7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0380900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75990244..75991780) extracted from Lotus japonicus Gifu genome v1.2.
GGATTAGTGGCGGGTTCTCTTTTGAAAACAGAGCAAAACAACAAACAGAGTATGAAACCCACGTTCCTCCTATTTATCAA CATAACCGTCCCATTAAGTGCTAGAAATCTTCCACAACTCACACCATCATTATGTACCTCTTCAGTTCTGGTCTCTTCTA TGAGGGTTTATAAATCACCAAATCAAGAGAGAATCATCTTTACAACAACAAAAAGATGAAGTGGGGTGGAAGAAGAAAAC CTTCTTCAGGTTCTTCTTCTTCTTCTTCTAAGCCTTCTTTCACCTCTCCTTTTTCTTGGCTCTCCAAGTTCAAGCAGATG AGAATCAACAACAACTCTGAGCCAAAACAAGAAAAACAACTGAAGCATCAGAATACAAAGCAGAATTCCCCATCTGATAA TTCATCCCAATATCAATATGCTAGTGGGAGTGGAGCCAGGTTTTATGGAGAGGATGGTGATGATTTCTGGAGACTTTCAT TCTATGTAGAGGGCAATAATGATCATAAGGAGAGTACTGAAGATGTTATCAAGCCAGAAAAGTACAATTTGGATGCTGAA AGACATGGAAGAAGAGAAGGGACAAGGCAGAAGAAGGAAATTGGGGTGAAAGAAGAAAGGGAATCACTAAATGAAGCAAA GTGTGCAAAGGAGCTTGAATGCTTGAGGAGGAGATATGAGAGGAAAGCACATAGAGTTTTGCAAGAGCATCTCTTGAAAT CAGAAAGAGCAGAATTACAAGAAGTTGAATTTGCACCAAGAAGTAAGTACTTGGAAAAGGATGAGATTCAATTTGAATCA CCAAAAACAATTAGGACACCAAGAATGCACATGCTTTTCTCTTCTAGTGCATCTAGCACCCAAAACTCTGAGAAGAAAAT GAGCTCACAGAGGCAGAATTTGAAACAAGGTGAGGATGTCAAAGCAAAAGTCAGCAAACCAAGGAAATCAATTCATGTGA GCAGAGAAATCCAGGGGAGGAAACCAAAGCCCACTTCCTCCAAGGTGAGAGTGCATTCTCCAAGGATGAGTTCCAAGGTT GAAACATGCAAAATAAAGGCTTTGGAAGAAAAGAAAGCAAAGCTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAAA AGTAGAATTAGATAGCTTTGCTGTGGTGAAATCTTCCCTTGACCCACAACAAGATTTCATGGATTCAATGATTGAGATGA TCACAGAGAAACAGATTAGCAAGCCAGAAGAAATGGAAGAGCTTCTAGCATGTTACCTGACTTTGAATTCTAATGAGTGG CATGATCTCATCATTGAAGCGTTCAGGCAGGTATGGTTATATCTGAGCCAAGCTGGTTTGAGTGTTAAATCAGACAAGCA ATGTTGTTGTTGTCATGATTGAGAACTTCAGTTTAGCTTGTAGTTTGTAGGAAAACTTCAACATAATTGTAAGTAATTGC TCTTGTTCTAGTTATGCTTTAATTTTGCCTGAATTTTCAGTATTCTCTTCACATATTCTGTAAAAATTTCAAGACAAGTT GCATCAAGATATCAACA
CDS sequence (LotjaGi4g1v0380900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGGGTGGAAGAAGAAAACCTTCTTCAGGTTCTTCTTCTTCTTCTTCTAAGCCTTCTTTCACCTCTCCTTTTTC TTGGCTCTCCAAGTTCAAGCAGATGAGAATCAACAACAACTCTGAGCCAAAACAAGAAAAACAACTGAAGCATCAGAATA CAAAGCAGAATTCCCCATCTGATAATTCATCCCAATATCAATATGCTAGTGGGAGTGGAGCCAGGTTTTATGGAGAGGAT GGTGATGATTTCTGGAGACTTTCATTCTATGTAGAGGGCAATAATGATCATAAGGAGAGTACTGAAGATGTTATCAAGCC AGAAAAGTACAATTTGGATGCTGAAAGACATGGAAGAAGAGAAGGGACAAGGCAGAAGAAGGAAATTGGGGTGAAAGAAG AAAGGGAATCACTAAATGAAGCAAAGTGTGCAAAGGAGCTTGAATGCTTGAGGAGGAGATATGAGAGGAAAGCACATAGA GTTTTGCAAGAGCATCTCTTGAAATCAGAAAGAGCAGAATTACAAGAAGTTGAATTTGCACCAAGAAGTAAGTACTTGGA AAAGGATGAGATTCAATTTGAATCACCAAAAACAATTAGGACACCAAGAATGCACATGCTTTTCTCTTCTAGTGCATCTA GCACCCAAAACTCTGAGAAGAAAATGAGCTCACAGAGGCAGAATTTGAAACAAGGTGAGGATGTCAAAGCAAAAGTCAGC AAACCAAGGAAATCAATTCATGTGAGCAGAGAAATCCAGGGGAGGAAACCAAAGCCCACTTCCTCCAAGGTGAGAGTGCA TTCTCCAAGGATGAGTTCCAAGGTTGAAACATGCAAAATAAAGGCTTTGGAAGAAAAGAAAGCAAAGCTGAAGATGAAGA AAGAAGAGGAAATTGTGGAGGAAAAAGTAGAATTAGATAGCTTTGCTGTGGTGAAATCTTCCCTTGACCCACAACAAGAT TTCATGGATTCAATGATTGAGATGATCACAGAGAAACAGATTAGCAAGCCAGAAGAAATGGAAGAGCTTCTAGCATGTTA CCTGACTTTGAATTCTAATGAGTGGCATGATCTCATCATTGAAGCGTTCAGGCAGGTATGGTTATATCTGAGCCAAGCTG GTTTGAGTGTTAAATCAGACAAGCAATGTTGTTGTTGTCATGATTGA
Protein sequence (LotjaGi4g1v0380900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWGGRRKPSSGSSSSSSKPSFTSPFSWLSKFKQMRINNNSEPKQEKQLKHQNTKQNSPSDNSSQYQYASGSGARFYGED GDDFWRLSFYVEGNNDHKESTEDVIKPEKYNLDAERHGRREGTRQKKEIGVKEERESLNEAKCAKELECLRRRYERKAHR VLQEHLLKSERAELQEVEFAPRSKYLEKDEIQFESPKTIRTPRMHMLFSSSASSTQNSEKKMSSQRQNLKQGEDVKAKVS KPRKSIHVSREIQGRKPKPTSSKVRVHSPRMSSKVETCKIKALEEKKAKLKMKKEEEIVEEKVELDSFAVVKSSLDPQQD FMDSMIEMITEKQISKPEEMEELLACYLTLNSNEWHDLIIEAFRQVWLYLSQAGLSVKSDKQCCCCHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 74 | 74 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| MobiDBLite | 8 | 42 | 35 | - | – | |
| PANTHER | 10 | 382 | 373 | 1.4E-100 | – | |
| PANTHER | 10 | 382 | 373 | 1.4E-100 | ||
| MobiDBLite | 52 | 71 | 20 | - | – | |
| Coils | 144 | 164 | 21 | - | – | |
| MobiDBLite | 210 | 271 | 62 | - | – | |
| MobiDBLite | 210 | 230 | 21 | - | – | |
| MobiDBLite | 231 | 258 | 28 | - | – | |
| Coils | 280 | 300 | 21 | - | – | |
| TIGRFAM | 308 | 371 | 64 | 2.2E-22 | ||
| ProSiteProfiles | 310 | 369 | 60 | 18.047 | ||
| Pfam | 314 | 370 | 57 | 2.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0380900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…