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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0381800 |
| Transcript ID | LotjaGi4g1v0381800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA ligase/cyclic nucleotide phosphodiesterase family protein; TAIR: AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein; Swiss-Prot: sp|O04147|CPD_ARATH Cyclic phosphodiesterase; TrEMBL-Plants: tr|G7L7Z2|G7L7Z2_MEDTR Cyclic phosphodiesterase-like protein; Found in the gene: LotjaGi4g1v0381800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76062695..76065759) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATTGGTCAATGTAAAACTAATTAATTTAATTAACCATTATAATACAGAGCATGTTCTTCTCTCTCTCTCTGACT TTTGATATTCCATGGCAACCACTGCGATTGAAACCCAGAAGAAGGAAGTGTATTCGGTGTGGGCAATCCCACCGGACCAC GTGCGTCCCAGGATCGCCAAGCTCATGACCGACCTCCGATCCGAGTTCGGCGGCCCCCACTTCGAACCCCACATCACCGT CGTTGGAGCCATCACCTTGACCGCCGACGACGCCCTCAACAAGCTCCGGTCAGCGTGCGAGGAGCTCAAGGCCTTCCAAG TCACCGTTGACCGTGTCGCCGCCGGCACCTTCTTCTATCAGTGTGTTTATCTCCTCCTTCATCCCTCTCCTCCGGTACTC TTCTTCTCTCTTCATATTTTTTCAATTTATCATTCTTTTTTATTTTAATGTTTTGTTTTTTCTTACTTTAGAAAATTTTA GAAATAATTAATTATACAATTTTTTTTTCTGCTCAATTTGAATAATGTTACTCATGAAGTGATAATTGATTTAACTTTCA ATGATTATTAATTGTTGATGCAAATTTGTATGTTGTTTGATTACTGTTGAAGAATCTTCACTTGAGAGTGATGGCTTTGG CTTGTCTTGTTAATTGTGGAACTGATTGATTGCCAGGTAGTGGAGACAAGTGCACACTGCAGCAACCATTTTGGTTATAA GAGTTCAACTCGTAAGTTACACAGCTCTTATTCTTAGCAATGATTTTGTGGTGCTATTATCAATTTATCATTACCATTTA TATGTGACATTATTAGATTTTACAATTGATGAATAAAATTCATGTGGGAAGAGTATATTAGTAAGTAGTAACCCTAACCC ATCTATATGATATTCGTTGATGAAGCTTGAGACAGAGTCGCTTTATCAGCATTGTTCATGTCTTAATTGTTGCATATACT AGTGCTGTTATGTTTCATGATGGTTTTCTAAGCCAGGAGATATATGTTCTCAGAAATGTCTCTCTATGATAAGCCTAAGG TTGAAAGCAGCCCTTTATAGCTAACCTTCTTAAGAGATAATTGGTAATAAGATTCAAGCAGAGTGTGGCATGAAAGGCTA TTTACTCAGTCAGTTTGCATTGTGAACAAAATCATTTTGCTGCTTTCGTTAATCAATCTAAACAAATTCACTGAAAGTAT TGACTATAAGTAGTCTTTTGAAGAAGAAAAAAAGTGAGCTGAATTTTGTGCTTTGGATGATGAAGAACATTTTCACTTGG AGGATGAATTGTAGTACTTTAAAACTCATTTCCCTAGAGTTGAATCTACTTTCTCTTTGAACGTTAATCAGTTATCATAG TGTGCTAGTCATTCTGATTAGAGGATATACATATTGTATCAAGTGTCTATCCTATAAGTGATAGTCACTTCTCAAATGAC TTGTTCTACAAGTGTTAAAAAATCAGAGTACCTCTTTGGCAATAACATAGGGTAAAAGGTCAGTAGGTGAATATGTACTG CTATAGTGTGAGGAACAGGGAGGGTGAGATTCATAACTCAAGGTTTTTGCCTCTTCTCCTTTACAATTGGATATCTTGTT TAATGTGCAGCTTACATGCCACACTTGAGCCTTCTATATGGAGATTTGACTGATGAAGAGAAGCAAAAGGCTCAAGAGAG AGCTAAAGTTCTTGACTACAGTCTCAGTGGCTTGAGCTTTGAGATTACTCGGCTTGCATTGTACAAAACAGACACTGAAG ACAAAACTCTGAAATCTTGGGAGAAAATTGCTGAATGCACCCTTAGTTCAAGTTAGCTTGACACATTAACGCCAGCACAA GCTGTTGTGTACAAAAAATAAAGAACACTTCTGTGTTATGACCTCTACTGTTGTCTTAAATATCTTCTAAACTGATTGGG ATATTATAAAGTGGACAATTATAAAAGTGGTCCACCCGTGAAACATCATAGTGGTGAAGTATGATGTTCACCGTGGACCA TTTTCAAATTGGCCTGCATATACCGACCCGAACTGTTTGTTTTCTGCATCTGTGTTCTATGGTTTTTTATACTCTGTTTG CCACTTACCCTTTCTACTGTGTGCTCACCAACTAACATAGTCCCTGGATAATGTGGAAGAAGATTCCAATTAACATATTC CATGGACAATTTGGTGTCTTTGAGAGGAAGGGAAGGTAAGCGCTCCCTTGTTTGGAAGCTCAAATTCTACAAAACCCCAT AATTCGGGGCAACTCCACAAAATAACTAAAGAGCGATCTTGGATAGTTTTCAAAAATTCCCCAAACTCTTTCCCCATTTT AAAAAAACTCTCAAACAAAGGGAGAGTTTCTCATAATCCTCATATTTCCTTTCTCAGTTTCTCTCCCCTCCAAAATCCAA CATGCTTAGGCTTTGTATGGAAGTTTTTGAGAAAGGGAAGTGGAAGACTTTGAGGGGAAGGGAGGGTAAGTCCTCCCATT GGTTCTTGGAAGATCAAAATTCCTTAAAACCTCAAATTTGGGGAAACTTCACAGCATAACTAGGCTTTGTTTGTGAGTTT TTAGGGAATGCGTGTGAAAGACTTTGAGGAGAAGGGAATGAGAGGGCAAGAGAGAGGAGAGGGAGTAAGCCCTTTCCCTT GTTTGCGAGTTCCAAATTCCCTAAAATGCCCCAAATTGGAGGAACTAAAAGAAGGCTTTGAAGGGGTGTTTTCAGAAACA TCTCAAACCATTCTCCTCTTTTTAAAATCCCCCGAACTAAGGAATGACTTCTCATGAGCTCTCATTTCCCTTTCACTCTC TTTCAAAACTCAACTCACAAACACCTGGGTCATGGAGGAGTATTAAAAAATTCTCCACGACATTTTTTCCTTCTTAAAAA ACTCTCAAACAATAGAAGAGCTTCTCATAAACTTTGTATTTCCCTTCCCCATTCAAAATCCAAATTGCAAACAAAACCTA ATTAAACTTAAGAGGGGACCACAAAACAAAATACATTGTTTCTTTATTTAACTTTCAATTGATTCTTCGTGTTGCAATCC TTCAATGCTAGACCTAACATCATAA
CDS sequence (LotjaGi4g1v0381800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCACTGCGATTGAAACCCAGAAGAAGGAAGTGTATTCGGTGTGGGCAATCCCACCGGACCACGTGCGTCCCAG GATCGCCAAGCTCATGACCGACCTCCGATCCGAGTTCGGCGGCCCCCACTTCGAACCCCACATCACCGTCGTTGGAGCCA TCACCTTGACCGCCGACGACGCCCTCAACAAGCTCCGGTCAGCGTGCGAGGAGCTCAAGGCCTTCCAAGTCACCGTTGAC CGTGTCGCCGCCGGCACCTTCTTCTATCAGTGTGTTTATCTCCTCCTTCATCCCTCTCCTCCGGTAGTGGAGACAAGTGC ACACTGCAGCAACCATTTTGGTTATAAGAGTTCAACTCCTTACATGCCACACTTGAGCCTTCTATATGGAGATTTGACTG ATGAAGAGAAGCAAAAGGCTCAAGAGAGAGCTAAAGTTCTTGACTACAGTCTCAGTGGCTTGAGCTTTGAGATTACTCGG CTTGCATTGTACAAAACAGACACTGAAGACAAAACTCTGAAATCTTGGGAGAAAATTGCTGAATGCACCCTTAGTTCAAG TTAG
Protein sequence (LotjaGi4g1v0381800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTAIETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVTVD RVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSSTPYMPHLSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITR LALYKTDTEDKTLKSWEKIAECTLSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 186 | 186 | 8.6E-74 | ||
| Gene3D | 6 | 187 | 182 | 1.7E-61 | – | |
| PANTHER | 10 | 185 | 176 | 1.9E-80 | – | |
| SUPERFAMILY | 10 | 184 | 175 | 1.26E-40 | ||
| PANTHER | 10 | 185 | 176 | 1.9E-80 | ||
| Pfam | 20 | 169 | 150 | 1.3E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclic-nucleotide phosphodiesterase activity | Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate. |
Expression pattern of LotjaGi4g1v0381800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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