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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0384800 |
| Transcript ID | LotjaGi4g1v0384800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein, putative; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L680|K7L680_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0384800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76327117..76328640) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGGTAAGTTAGCACAATAAGACACATTCTCAAAAGGCTATCCATCCATGAAGCCCTTGCATACCCTTTTCAATTCCT TGTCCCAAGAGTGCTCCAAGCTCTTCAAAGCTCCAAAATTCTTCTTAGATAATTTACTTAGCTCCACCCAGAGAAACCCA TTTCTAATCCTTGATCGCTTTCACTGGAAGGACAATATCTGTGGCCAGCAGTTGTTTCTCCTAGATGTCAAAAGAAAAGA GCTTAAAGAACTTCACATTCCAAGAGTCACAGATTCTGACATGGGTTTTAAGGTGGTGGGTTCATGCAATGGTTTACTCT GTGTTGTTCATTATTCCTTGGATCCAAACTCTGCAATCTTCCTCTGGAACCCAGCTACATCACAAACCAAAAGGGTCCTG GAATCAGAAAACGCTTTGCTTCCTCATAAGGTGCCACCAAATTGTCTAATAGGCTTTTACTTCAACTACAGTGACAATGA TTATCAAGTTGTGAGGCTCTACTCTTTTGGTTTTGATGATTCTCTTAGCAAGATTAATGCTGTTCAGGTTGAAAAATACT CACTGAGTACTGGGTTGTGGAGAGAAATCAAATGTGATCAGCAAATAACAGTGAATGGATGTTTGTTTTGGACAGAGAAC ACTGTGACAGTGGATGAAACTTTGTTTTGGGGGGCCATGGAGGTGAGTGAAAAGGTTAGCCATGAAATGATTATTTCTTT CAATTCATGTAACAATGTGGTTAGCAAGATTGAGTTGCCTGTTTCTGCTAAGAATTGTTCTGAAGTTTATAAGAAACTTG CAGTGTACAAGGGTTTTGTTTCTGTGATTATTTGCTTAGAAAGTGAACATATGGAACAATGGTTAGAATTGTGGGGTTTT TATGATAAATATGAAGGTGTGGAGTGTTGGAACAAGTTACAGACAATAGGAATGTTTTCAAGATTAGAGCGTCCAGTGGG GGTTTGGAAAAATGAAATTCTTATGGCAACTGATAAGCAAATACATGGTGTTAGTGGAACCATAGCTTTGCTTCCGGAAG ATGATGATCTTGAAGCTGAGTTTTCCTACAATGTCTTTAACTATGTGGAGAGCTTCATTCCTTTACTGGGTGGGAATATG AATGTGGAGACTGACCCCTTTGAAAGCGAATGGATTCTGGTTACATGATGTGCTCAGGAGCAATATCAGCAAATTAAGCA TTGAAGGCAATGTACAGATAGGACTGAAGACTAAGACTATGTTTGTATATTCGTTGACACCATTGTAAACTGATGTTAAC ACGAACTTACAGAAAAAAAAAGTGAACACAATTCTTCTTATGGATTGAAATGAAAGTGAGTTCATGTTGCTCTCAATTGG CCCAAATACAGACTAACTAGATTTCCTTTGTTAGTCTATAATATATGTATGTGGAAGAAGCCTGTGAATGCCATTGTGTA ACTTAAGCTCATTATCTTCTCTACATTGGTATCCATCTGCATATGTACATATAGCTATGGTAGCATAGAACAATATTAAG GGAA
CDS sequence (LotjaGi4g1v0384800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCCTTGCATACCCTTTTCAATTCCTTGTCCCAAGAGTGCTCCAAGCTCTTCAAAGCTCCAAAATTCTTCTTAGA TAATTTACTTAGCTCCACCCAGAGAAACCCATTTCTAATCCTTGATCGCTTTCACTGGAAGGACAATATCTGTGGCCAGC AGTTGTTTCTCCTAGATGTCAAAAGAAAAGAGCTTAAAGAACTTCACATTCCAAGAGTCACAGATTCTGACATGGGTTTT AAGGTGGTGGGTTCATGCAATGGTTTACTCTGTGTTGTTCATTATTCCTTGGATCCAAACTCTGCAATCTTCCTCTGGAA CCCAGCTACATCACAAACCAAAAGGGTCCTGGAATCAGAAAACGCTTTGCTTCCTCATAAGGTGCCACCAAATTGTCTAA TAGGCTTTTACTTCAACTACAGTGACAATGATTATCAAGTTGTGAGGCTCTACTCTTTTGGTTTTGATGATTCTCTTAGC AAGATTAATGCTGTTCAGGTTGAAAAATACTCACTGAGTACTGGGTTGTGGAGAGAAATCAAATGTGATCAGCAAATAAC AGTGAATGGATGTTTGTTTTGGACAGAGAACACTGTGACAGTGGATGAAACTTTGTTTTGGGGGGCCATGGAGGTGAGTG AAAAGGTTAGCCATGAAATGATTATTTCTTTCAATTCATGTAACAATGTGGTTAGCAAGATTGAGTTGCCTGTTTCTGCT AAGAATTGTTCTGAAGTTTATAAGAAACTTGCAGTGTACAAGGGTTTTGTTTCTGTGATTATTTGCTTAGAAAGTGAACA TATGGAACAATGGTTAGAATTGTGGGGTTTTTATGATAAATATGAAGGTGTGGAGTGTTGGAACAAGTTACAGACAATAG GAATGTTTTCAAGATTAGAGCGTCCAGTGGGGGTTTGGAAAAATGAAATTCTTATGGCAACTGATAAGCAAATACATGGT GTTAGTGGAACCATAGCTTTGCTTCCGGAAGATGATGATCTTGAAGCTGAGTTTTCCTACAATGTCTTTAACTATGTGGA GAGCTTCATTCCTTTACTGGGTGGGAATATGAATGTGGAGACTGACCCCTTTGAAAGCGAATGGATTCTGGTTACATGA
Protein sequence (LotjaGi4g1v0384800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLHTLFNSLSQECSKLFKAPKFFLDNLLSSTQRNPFLILDRFHWKDNICGQQLFLLDVKRKELKELHIPRVTDSDMGF KVVGSCNGLLCVVHYSLDPNSAIFLWNPATSQTKRVLESENALLPHKVPPNCLIGFYFNYSDNDYQVVRLYSFGFDDSLS KINAVQVEKYSLSTGLWREIKCDQQITVNGCLFWTENTVTVDETLFWGAMEVSEKVSHEMIISFNSCNNVVSKIELPVSA KNCSEVYKKLAVYKGFVSVIICLESEHMEQWLELWGFYDKYEGVECWNKLQTIGMFSRLERPVGVWKNEILMATDKQIHG VSGTIALLPEDDDLEAEFSYNVFNYVESFIPLLGGNMNVETDPFESEWILVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 73 | 313 | 241 | 1.7E-20 | – | |
| PANTHER | 73 | 313 | 241 | 1.7E-20 | – | |
| TIGRFAM | 84 | 316 | 233 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0384800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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