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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0389000 |
| Transcript ID | LotjaGi4g1v0389000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G10780.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9SAC4|FB2_ARATH F-box protein At1g10780; TrEMBL-Plants: tr|V7CQP3|V7CQP3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0389000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76739190..76740945) extracted from Lotus japonicus Gifu genome v1.2.
GCAACTATTGAGTCTCTCCCTGATGCTGTTCTCCAATACATTTTGTCCCACATCAGCAATGCTCGCGATGTGGCGGCCTG CAATTGCGTTTCTAAGCGGTGGAGGGACGCTACGACGTCTGTTAGAGCACTCTACTTCCCTCGCAGCTCGTTTGACAACT ATTCTTCTTCGGGTGGTGTTGGTGAAGCTTCTGACAACATTGTGAGAAGAATGGTGTCTAGGGTCTTGCGGTTGGAAGAG CTGATTGTGTATAGCCCTTTCTCCCCTTCTGGCTTGGCATCATGGCTCTCGCTTGTGGGGCTGTCTCTTCGCCAGCTCGA GCTTCGAATGGACAACCTTGCTGCCCATAATCAAGGCTCCCATGAGACCCCTTCAAAGTCGGAGTGTGTTGGTGCTGCGA GGAATTTGGAATCTCTGAAACTGTGGGGTGTCTTGATGGTGCATTCCCCAAAATGGGATGTTTTTCCCAATCTCAAGAAC CTGGAAGTAATTGGTGCAAGATTGGAGGACCATGTGTTAACTGCGGTGCTTCAGGCGTGTCCTTTTCTCACCAGGTTGCT GCTGCTTGGATGTGAAGGGGTTAGATCAATCTCAATTGACCTGCCATACTTAGAGCAGTGTAAGCTAGATTTTTATGGCG TGGGGAACTGTTCACTTACCTTGAACTCCCCGAAAATTGAATCCCTTGAGATACAAGGTTGTAGCTGGATTAAGGTCTCT GAAACCAAGCATTTGAGGAACCTTTCAATATCCAATAGTTCAGGTAATTAATTATCTTAAGTGGTTAATAAATTTACATA TTTCTCATTGCCCATATCTATTTTTCCCTTTGTTTCCAAGTAATCCCGTATAGGTTTGTCCTTTAGGATTTTGTTTAGCT AATAGCATGTTTAGATCAACTTTTCTTTTTCTCATAGGCAATTTTGACATCCAATAGTTACTTACATGAGCTTTTCATCT AATGTGATTTTGAAATCAATTATAGATGCATTCTCAAACATGCATTAAAATCATTATCCTCAAACTTTTTGCTTCCACAT TTTAAAGCTAGCTGCTTGTTTGGATTAAATTTTCTTTTTTCAGAATCAATTCTGATATCCAAAAGCTACTTACATCAGTT TCTCTTTCAATGTGATTTTGCTTCCAGGGAGAGTATATATGGTTGATTTTGGAAACCTTTCAGCTCTGGAGTTCCTGTCT ATGAGGGGTGTCCAGTGGTGCTGGGATGCAATATGCAGAATGCTGAAATTGGCTAGTGAGGTGAAACATCTCTACATGAA GGTTGAATTCACTGGGGACTTTGAGGCTCTTCAACCCTTTCCAGAGATTGATTTTGTTGATTTTTTCAACAGCCATCAAA AGCTGAGAAAGTTTGATATTCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGCCTCAAACATGTAAAGTCATTT TAGTAACAACTTTGATATCACTTTTCTGATTGAGGATCTTTAATATCTCATTTATGAAGATACTTTGCTTATTTTACAGG TGGATTCAGGATTTGCGATACCATTTTTGGAGGAGGTTGTGATCACAGTGAGGTCACCGCTAAATGCTGAACAGAAAATG AGTACTCTTGAATCCTTGTTGAAGTACGGGAAGAGTCTGAGGACCATGGTAATCAAGATTCTTGAGATGAAGGCTTGCCA TAACAGCACTGATGATTTTTTTGATGAGATTTGCAGGTTCAGATACATGAACCACAACATAGTTCGAATACAATAA
CDS sequence (LotjaGi4g1v0389000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTAGGGTCTTGCGGTTGGAAGAGCTGATTGTGTATAGCCCTTTCTCCCCTTCTGGCTTGGCATCATGGCTCTC GCTTGTGGGGCTGTCTCTTCGCCAGCTCGAGCTTCGAATGGACAACCTTGCTGCCCATAATCAAGGCTCCCATGAGACCC CTTCAAAGTCGGAGTGTGTTGGTGCTGCGAGGAATTTGGAATCTCTGAAACTGTGGGGTGTCTTGATGGTGCATTCCCCA AAATGGGATGTTTTTCCCAATCTCAAGAACCTGGAAGTAATTGGTGCAAGATTGGAGGACCATGTGTTAACTGCGGTGCT TCAGGCGTGTCCTTTTCTCACCAGGTTGCTGCTGCTTGGATGTGAAGGGGTTAGATCAATCTCAATTGACCTGCCATACT TAGAGCAGTGTAAGCTAGATTTTTATGGCGTGGGGAACTGTTCACTTACCTTGAACTCCCCGAAAATTGAATCCCTTGAG ATACAAGGTTGTAGCTGGATTAAGGTCTCTGAAACCAAGCATTTGAGGAACCTTTCAATATCCAATAGTTCAGGGAGAGT ATATATGGTTGATTTTGGAAACCTTTCAGCTCTGGAGTTCCTGTCTATGAGGGGTGTCCAGTGGTGCTGGGATGCAATAT GCAGAATGCTGAAATTGGCTAGTGAGGTGAAACATCTCTACATGAAGGTTGAATTCACTGGGGACTTTGAGGCTCTTCAA CCCTTTCCAGAGATTGATTTTGTTGATTTTTTCAACAGCCATCAAAAGCTGAGAAAGTTTGATATTCATGGAGCCATGTT TGCAGCACTATGCCAGAAGAACAGCCTCAAACATGTGGATTCAGGATTTGCGATACCATTTTTGGAGGAGGTTGTGATCA CAGTGAGGTCACCGCTAAATGCTGAACAGAAAATGAGTACTCTTGAATCCTTGTTGAAGTACGGGAAGAGTCTGAGGACC ATGGTAATCAAGATTCTTGAGATGAAGGCTTGCCATAACAGCACTGATGATTTTTTTGATGAGATTTGCAGGTTCAGATA CATGAACCACAACATAGTTCGAATACAATAA
Protein sequence (LotjaGi4g1v0389000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSRVLRLEELIVYSPFSPSGLASWLSLVGLSLRQLELRMDNLAAHNQGSHETPSKSECVGAARNLESLKLWGVLMVHSP KWDVFPNLKNLEVIGARLEDHVLTAVLQACPFLTRLLLLGCEGVRSISIDLPYLEQCKLDFYGVGNCSLTLNSPKIESLE IQGCSWIKVSETKHLRNLSISNSSGRVYMVDFGNLSALEFLSMRGVQWCWDAICRMLKLASEVKHLYMKVEFTGDFEALQ PFPEIDFVDFFNSHQKLRKFDIHGAMFAALCQKNSLKHVDSGFAIPFLEEVVITVRSPLNAEQKMSTLESLLKYGKSLRT MVIKILEMKACHNSTDDFFDEICRFRYMNHNIVRIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 1.3E-167 | – | |
| PANTHER | 1 | 356 | 356 | 1.3E-167 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Gene3D | 2 | 353 | 352 | 1.5E-15 | ||
| Phobius | 12 | 33 | 22 | - | – | |
| Phobius | 34 | 356 | 323 | - | – | |
| SUPERFAMILY | 62 | 279 | 218 | 3.45E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0389000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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