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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0389800 |
| Transcript ID | LotjaGi4g1v0389800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine-specific demethylase; TAIR: AT4G20400.1 JUMONJI 14; Swiss-Prot: sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14; TrEMBL-Plants: tr|A0A0B2SUA6|A0A0B2SUA6_GLYSO Putative lysine-specific demethylase JMJ14; Found in the gene: LotjaGi4g1v0389800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76826829..76828779) extracted from Lotus japonicus Gifu genome v1.2.
TATTGACCTCACTTCTGATGAACCTGATAACGATCACTTTAAGGGCCTAATTGAATCTGCTTATGAAGCTGTTAATCTTG TAAGTTTGGGCTCTGTTATGTTTGGAAAGCTCTGGAGCAGTAAGCATGCAATATATCCAAAAGGTATGTTGCAAATCTTT TCTGGGCTTATTGCTTTATTATACACTTTTGTCTGAGATTAACTTTTGTTTTGGTAAACTTGTGAAGGATTCAAGAGCCG TTTTATGTTCTTTAGCACTTTAGATCCAGCAAACCTATGTGACTATGTTTGTGAAGTCATTGATGCTGGACTTCTTGGGC CTGTTTTCAAGGTATCATTCCTATCCTTGTTTCTGTTTTAAGTTTAAAATCATACTGACACATGCTTCTGTTTCTAAATA TAAGTTATTTCTGGGGCTGAATCATACTGGCTCAAATACAATGATATATATTTCTCAGGTTTTTGTGTGGGTTGAGTTGG AGTGAAGAGAAAGTGAGTGTGATTATATCAAAAGTGTTACTTTAGGTCGGAGGAAACTTGATACAATACTTTATTTGCGG TTTATGTTGTTGCCCAATAAAAAAAATTCCAAATACTTTCTTTCTTAATGTTTTATTGACTTTTTAATGTGATGACTTCC CTCAACTTCACTTTAGCTCACGTGTTATGTTGTAATTGAACAACAGTAAAAACAACATGTATGAATGTGTAGTTAAGTTT TGTCCTTCTTTTTCTAGCTTGCATTGGGACTGAATCTCTTATATATTGTTATTATTTCTAATAATCCTATAGGAAAAGTT GCTTTCTTCTTTTCTTCCACACTCTTATTGAAGTCTTCTTTCTTCATAAACTTTGTTTTAGTTGTTTCATTATGTATTGT TTGGGATAATTTTTTTGTCCTCTTCTTTGCTTGTTTTGGAATTTTGTTTTTGAAATTTTCTAGAGAAACTCAGGGGCTGT TATGGTTTGTACTTTGTACTTATTTGCATGCCATGTTTTTCAATTGAATGTATACTTCTTTCTCATTAAGTAAAATATTT TTCAGGTTACAATGGAATTACACCCAAATGAGACATTCACACAGGCTTCAGCAGATAAGTGCTGGGAGACAGTTCTGAAT AAACTAATTCATGAAATCAAGAGGCGAGAGAGTCTAGGTGAAGAAGCACTTCCTCCCTTAGAACTTCTGCAAAGCACCAA TGGTCATAAAATGTTTGGATTCCTTTCTCCACCCATTATTCAGGTAATGCAAACTCATAAAATGCAGAAGTTTTTTTACG TCAACCAATCCGATTCCAAAGACGTGGGAAAATAGTTTCTTACACATTTTTTAAATCTGATTGGTTGACAGAGTAAAGTA AGAGTGTCAGTGCATCCAAATCAAACTCTTATGTACATGGTTTGAATCTTTTATGCTTCAACTTCTGATGTTTTAATCCA TTGTGACCAACTTTTTGCAGTCAATTGAAGCTCTAGATCCTGGTCATAAATGTGTGGAGTACTGGAACCACAAAGGAGCA ATTTCTGAATCTTCAGGCAGGGCCATTGATGCCTCTACGAGTAAGGCTCCTCATGGCTCTAGTAACTCTACACAAGGTGT CAGTACCACCAAACTTTTTGGTGTCACTTTGGTAAAGCGGGAGGAGGATGACATGGTACAAGGTTCTTCTCATTCCTCTG AAGAGAACAAGTTGAGGCTACAAGGGTTGTTGAAAAAGGCAAGTCCTGATGAGTTAAGTTCCATGCATCAGTTATTCAGC TCTGATGCAGAGTTAACTCAATCTAGAGTGGAAATTGTGAAGCAGATAGATGGAATCCAGAAATCTCGTGCATAAAACAA GAAATAGTTCTTAATTCTGTGACTGTGGATGATTGTATTTCAACTTAGTCAATTGTTTAGTACTTTAGTTCTTTCAGAGA TTATTTAAACTACAGAGGAGGTTGATGGATT
CDS sequence (LotjaGi4g1v0389800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGAAAGCTCTGGAGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGTTTTATGTTCTTTAGCACTTT AGATCCAGCAAACCTATGTGACTATGTTTGTGAAGTCATTGATGCTGGACTTCTTGGGCCTGTTTTCAAGGTTACAATGG AATTACACCCAAATGAGACATTCACACAGGCTTCAGCAGATAAGTGCTGGGAGACAGTTCTGAATAAACTAATTCATGAA ATCAAGAGGCGAGAGAGTCTAGGTGAAGAAGCACTTCCTCCCTTAGAACTTCTGCAAAGCACCAATGGTCATAAAATGTT TGGATTCCTTTCTCCACCCATTATTCAGTCAATTGAAGCTCTAGATCCTGGTCATAAATGTGTGGAGTACTGGAACCACA AAGGAGCAATTTCTGAATCTTCAGGCAGGGCCATTGATGCCTCTACGAGTAAGGCTCCTCATGGCTCTAGTAACTCTACA CAAGGTGTCAGTACCACCAAACTTTTTGGTGTCACTTTGGTAAAGCGGGAGGAGGATGACATGGTACAAGGTTCTTCTCA TTCCTCTGAAGAGAACAAGTTGAGGCTACAAGGGTTGTTGAAAAAGGCAAGTCCTGATGAGTTAAGTTCCATGCATCAGT TATTCAGCTCTGATGCAGAGTTAACTCAATCTAGAGTGGAAATTGTGAAGCAGATAGATGGAATCCAGAAATCTCGTGCA TAA
Protein sequence (LotjaGi4g1v0389800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGKLWSSKHAIYPKGFKSRFMFFSTLDPANLCDYVCEVIDAGLLGPVFKVTMELHPNETFTQASADKCWETVLNKLIHE IKRRESLGEEALPPLELLQSTNGHKMFGFLSPPIIQSIEALDPGHKCVEYWNHKGAISESSGRAIDASTSKAPHGSSNST QGVSTTKLFGVTLVKREEDDMVQGSSHSSEENKLRLQGLLKKASPDELSSMHQLFSSDAELTQSRVEIVKQIDGIQKSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 42 | 42 | 18.354 | ||
| PANTHER | 1 | 226 | 226 | 1.3E-91 | – | |
| PANTHER | 1 | 226 | 226 | 1.3E-91 | – | |
| SMART | 1 | 42 | 42 | 5.7E-8 | ||
| Gene3D | 3 | 128 | 126 | 1.8E-20 | – | |
| Pfam | 5 | 39 | 35 | 3.9E-8 | ||
| ProSiteProfiles | 44 | 134 | 91 | 24.475 | ||
| Pfam | 46 | 132 | 87 | 9.4E-20 | ||
| SMART | 48 | 140 | 93 | 9.1E-18 | ||
| MobiDBLite | 142 | 163 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0389800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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