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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10694
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.016s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0106299.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Glycine max] gi|356533957|ref|XP_003535524.1| chr0 45691078 45700478 +
1 domain prediction
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Lj0g3v0258129.1
n.a. PREDICTED: lysine-specific demethylase 5D-like [Glycine max] gi|356530249|ref|XP_003533695.1| chr0 134045107 134048028 -
1 domain prediction
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Lj0g3v0287519.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr0 149393149 149395990 +
1 domain prediction
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Lj0g3v0351959.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Glycine max] gi|356518921|ref|XP_003528124.1| chr0 185067569 185075929 +
1 domain prediction
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Lj1g3v4515430.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum] gi|502110041|ref|XP_004493785.1| chr1 52895050 52901392 -
1 domain prediction
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Lj2g3v1509500.1
n.a. PREDICTED: lysine-specific demethylase 5C-like [Glycine max] gi|356531447|ref|XP_003534289.1| chr2 23827135 23832890 -
1 domain prediction
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Lj2g3v2017660.1
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481615|ref|XP_003611093.1| chr2 30946701 30948203 -
1 domain prediction
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Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
1 domain prediction
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Lj2g3v2017660.3
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481615|ref|XP_003611093.1| chr2 30948598 30954085 -
1 domain prediction
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Lj4g3v1389260.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Cicer arietinum] gi|502176308|ref|XP_004515844.1| chr4 21659660 21668111 -
1 domain prediction
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Lj5g3v1265040.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356574834|ref|XP_003555549.1| chr5 20155323 20164611 -
1 domain prediction
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Lj5g3v1811440.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr5 25871792 25878785 +
1 domain prediction
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Lj6g3v1116100.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356532896|ref|XP_003535005.1| chr6 13781026 13788064 +
1 domain prediction
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LotjaGi1g1v0231500.1
n.a. Zinc finger protein; TAIR: AT3G48430.1 relative of early flowering 6; Swiss-Prot: sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6; TrEMBL-Plants: tr|I1JXF4|I1JXF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0231500 LjG1.1_chr1 54298398 54306996 +
1 domain prediction
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LotjaGi1g1v0707900.1
n.a. Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q53WJ1|JM703_ORYSJ Lysine-specific demethylase JMJ703; TrEMBL-Plants: tr|K7MYQ0|K7MYQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707900 LjG1.1_chr1 127628633 127635600 +
1 domain prediction
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LotjaGi1g1v0707900.2
n.a. Transcription factor jumonji family protein / zinc finger family protein; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|C0SUT9|JMJ16_ARATH Putative lysine-specific demethylase JMJ16; TrEMBL-Plants: tr|K7MYQ0|K7MYQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707900 LjG1.1_chr1 127628661 127635321 +
1 domain prediction
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LotjaGi2g1v0021700.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|K7LKB6|K7LKB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021700 LjG1.1_chr2 7701183 7706947 +
1 domain prediction
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LotjaGi2g1v0336400.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|A0A0B2RWY9|A0A0B2RWY9_GLYSO Lysine-specific demethylase REF6; Found in the gene: LotjaGi2g1v0336400 LjG1.1_chr2 81324278 81330737 -
1 domain prediction
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LotjaGi2g1v0433900.1
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93045415 93061638 -
1 domain prediction
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LotjaGi2g1v0433900.2
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93046189 93061632 -
1 domain prediction
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LotjaGi3g1v0530600.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|I1L793|I1L793_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0530600 LjG1.1_chr3 94744671 94748726 +
1 domain prediction
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LotjaGi4g1v0225200.1
n.a. Zinc finger protein; TAIR: AT3G48430.1 relative of early flowering 6; Swiss-Prot: sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6; TrEMBL-Plants: tr|A0A0S3R676|A0A0S3R676_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225200 LjG1.1_chr4 53081818 53090306 -
1 domain prediction
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LotjaGi4g1v0389800.1
n.a. Lysine-specific demethylase; TAIR: AT4G20400.1 JUMONJI 14; Swiss-Prot: sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14; TrEMBL-Plants: tr|A0A0B2SUA6|A0A0B2SUA6_GLYSO Putative lysine-specific demethylase JMJ14; Found in the gene: LotjaGi4g1v0389800 LjG1.1_chr4 76826829 76828779 -
1 domain prediction
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LotjaGi4g1v0389900_LC.1
n.a. Lysine-specific demethylase; TAIR: AT2G34880.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|O64752|JMJ15_ARATH Lysine-specific demethylase JMJ15; TrEMBL-Plants: tr|K7L6B8|K7L6B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0389900_LC LjG1.1_chr4 76829993 76831495 -
1 domain prediction
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LotjaGi5g1v0201800.1
n.a. Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|C0SUT9|JMJ16_ARATH Putative lysine-specific demethylase JMJ16; TrEMBL-Plants: tr|K7N4Y4|K7N4Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0201800 LjG1.1_chr5 50161856 50171910 -
1 domain prediction
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LotjaGi6g1v0214500.1
n.a. Lysine-specific demethylase; TAIR: AT4G20400.1 JUMONJI 14; Swiss-Prot: sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14; TrEMBL-Plants: tr|K7LCJ5|K7LCJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0214500 LjG1.1_chr6 51372695 51380432 +
1 domain prediction
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